Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002707

Physical Location & Seq

Genomic Coordinates Forward (+)

40717074 .. 40721896

Gene Structure 4823 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG310400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGAGAATGTCCCGATCTGAAAACTTCCAATCAGAGTTGGCTCATGGGTTGGAGTTGAGTGGAAAACGATTCCTCTGGGTGGCGAGACCTCCCAGAGCCGATGGTGCTTCGGGAAGCTTCTTCGAAGCTGGTGTTGATGGTGCCCTTACGGCGTCGTATCTGCCGGATGGGTTTTCGGAGAGGACACGAGGGGCAGGGCTGGTGACGGCGACGTGTACGGCCGACTTGCCCTATTTTTCTTGTGTTCAAGATGAATATGAGGTTGTTCGGAAGGTTGGAAAAGGAAAGTACAGTGAGGTCTTCGAGGGTATAAATGTCACCAACAATGAAAAATGCGTGATCAAGATCCTTAGACCAGTCAAGAAAAAGTGCAAAAATGATGAGGAAATTGTAGCTGTTCTAGCTCATGAGCTAGGCCATTGGAAGCTTAATCACAGTGTATACTTCTTCATTTCTATACAGATCCGTACGCTGTTACACTTTGGGGGATATGCTCTCCTGAGAAACTCCAGCAGTCTGTTTCATACTTTGGGGGATATGCAGTCCTACTTTGTTGAATGGTCATTCGATGGGTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016021 GO:0016485 GO:0016787 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0070011 GO:0071586 GO:0071704 GO:0080120 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Peptidase_M48 Peptidase_M48_N

Protein Analysis

192

Amino Acids

21.53

Weight (kDa)

7.01

Isoelectric Point (pI)

30.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M48	PF01435	116 - 178	3.7e-10	Peptidase family M48

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002707)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33300 FvH4_2g33300 FvH4_2g33300 FvH4_2g33300 FvH4_2g33300
malus_domestica	MD08G1087400.v1.1 MD15G1072400.v1.1 MD15G1314700.v1.1
prunus_persica	Prupe.1G425000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0357221 RchiOBHm_Chr1g0362391 RchiOBHm_Chr2g0131551 RchiOBHm_Chr6g0309321
rosa_laevigata	RLG00000009840 RLG00000010574 RLG00000021364 RLG00000031506
rosa_multiflora	Rmu_sc0003576.1_g000007 Rmu_sc0015692.1_g000002
rosa_roxburghii	Rroxscaffold_3G00228160 Rroxscaffold_6G00412270 Rroxscaffold_7G00159490
rosa_rugosa	Rorug01G0255000 Rorug05G0444500 Rorug05G0444500 Rorug06G0371000
rosa_samantha	Rh2BG357900 Rh5AG062100 Rh5AG134700 Rh5BG310400 Rh5DG320900 Rh6AG235600 Rh6AG484400 Rh6BG493500 Rh6CG498300 Rh6DG484800
rosa_wichuraiana	Rw6G028820 Rw6G042170 Rw7G020100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	577
AccB1I	GGYRCC	1 cut(s)	140
AccI	GTMKAC	1 cut(s)	441
AclWI	GGATC	2 cut(s)	340, 457
AcoI	YGGCCR	1 cut(s)	219
AcyI	GRCGYC	1 cut(s)	152
AfaI	GTAC	3 cut(s)	217, 290, 469
AfiI	CCNNNNNNNGG	1 cut(s)	79
AflIII	ACRYGT	1 cut(s)	212
AgsI	TTSAA	2 cut(s)	248, 557
AjiI	CACGTC	1 cut(s)	213
AluBI	AGCT	6 cut(s)	117, 128, 395, 404, 412, 427
AluI	AGCT	6 cut(s)	117, 128, 395, 404, 412, 427
Alw26I	GTCTC	1 cut(s)	79
AlwI	GGATC	2 cut(s)	340, 457
AoxI	GGCC	2 cut(s)	219, 415
AsuHPI	GGTGA	2 cut(s)	214, 310
AsuII	TTCGAA	1 cut(s)	123
BaeGI	GKGCMC	1 cut(s)	145
BanI	GGYRCC	1 cut(s)	140
BauI	CACGAG	1 cut(s)	186
BbsI	GAAGAC	1 cut(s)	292
BccI	CCATC	4 cut(s)	95, 131, 161, 563
BceAI	ACGGC	3 cut(s)	165, 222, 234
BclI	TGATCA	1 cut(s)	339
BcoDI	GTCTC	1 cut(s)	79
BfaI	CTAG	2 cut(s)	401, 413
BglI	GCCNNNNNGGC	1 cut(s)	149
BmgBI	CACGTC	1 cut(s)	213
BmiI	GGNNCC	1 cut(s)	142
BpiI	GAAGAC	1 cut(s)	292
BpmI	CTGGAG	1 cut(s)	493
Bpu14I	TTCGAA	1 cut(s)	123
BsaBI	GATNNNNATC	1 cut(s)	344
BsaHI	GRCGYC	1 cut(s)	152
BsaI	GGTCTC	1 cut(s)	79
Bsc4I	CCNNNNNNNGG	1 cut(s)	79
Bse1I	ACTGG	1 cut(s)	356
Bse8I	GATNNNNATC	1 cut(s)	344
BseGI	GGATG	1 cut(s)	172
BseJI	GATNNNNATC	1 cut(s)	344
BseLI	CCNNNNNNNGG	1 cut(s)	79
BseMII	CTCAG	1 cut(s)	491
BseNI	ACTGG	1 cut(s)	356
BseSI	GKGCMC	1 cut(s)	145
BseX3I	CGGCCG	1 cut(s)	219
Bsh1285I	CGRYCG	1 cut(s)	222
BshFI	GGCC	2 cut(s)	221, 417
BshNI	GGYRCC	1 cut(s)	140
BsiEI	CGRYCG	1 cut(s)	222
BsiSI	CCGG	1 cut(s)	164
BsiWI	CGTACG	1 cut(s)	467
BslI	CCNNNNNNNGG	1 cut(s)	79
BsmAI	GTCTC	1 cut(s)	79
BsnI	GGCC	2 cut(s)	221, 417
Bso31I	GGTCTC	1 cut(s)	79
Bsp119I	TTCGAA	1 cut(s)	123
Bsp1286I	GDGCHC	1 cut(s)	145
Bsp143I	GATC	4 cut(s)	14, 339, 345, 462
BspANI	GGCC	2 cut(s)	221, 417
BspCNI	CTCAG	1 cut(s)	492
BspHI	TCATGA	1 cut(s)	406
BspLI	GGNNCC	1 cut(s)	142
BspPI	GGATC	2 cut(s)	340, 457
BspT104I	TTCGAA	1 cut(s)	123
BspT107I	GGYRCC	1 cut(s)	140
BspTNI	GGTCTC	1 cut(s)	79
BsrI	ACTGG	1 cut(s)	356
BssMI	GATC	4 cut(s)	14, 339, 345, 462
BssNAI	GTATAC	1 cut(s)	442
BssNI	GRCGYC	1 cut(s)	152
BssSI	CACGAG	1 cut(s)	186
Bst1107I	GTATAC	1 cut(s)	442
Bst2BI	CACGAG	1 cut(s)	186
Bst4CI	ACNGT	2 cut(s)	293, 437
BstACI	GRCGYC	1 cut(s)	152
BstBI	TTCGAA	1 cut(s)	123
BstDEI	CTNAG	2 cut(s)	350, 500
BstF5I	GGATG	1 cut(s)	172
BstKTI	GATC	4 cut(s)	17, 342, 348, 465
BstMAI	GTCTC	1 cut(s)	79
BstMBI	GATC	4 cut(s)	14, 339, 345, 462
BstMCI	CGRYCG	1 cut(s)	222
BstMWI	GCNNNNNNNGC	3 cut(s)	104, 149, 401
BstSLI	GKGCMC	1 cut(s)	145
BstV2I	GAAGAC	1 cut(s)	292
BstX2I	RGATCY	2 cut(s)	345, 462
BstYI	RGATCY	2 cut(s)	345, 462
BstZ17I	GTATAC	1 cut(s)	442
BstZI	CGGCCG	1 cut(s)	219
BsuRI	GGCC	2 cut(s)	221, 417
BtrI	CACGTC	1 cut(s)	213
BtsCI	GGATG	1 cut(s)	172
BtsIMutI	CAGTG	2 cut(s)	298, 442
CciI	TCATGA	1 cut(s)	406
CseI	GACGC	1 cut(s)	141
Csp6I	GTAC	3 cut(s)	216, 289, 468
CviAII	CATG	2 cut(s)	44, 407
CviQI	GTAC	3 cut(s)	216, 289, 468
DdeI	CTNAG	2 cut(s)	350, 500
DpnI	GATC	4 cut(s)	16, 341, 347, 464
DpnII	GATC	4 cut(s)	14, 339, 345, 462
EaeI	YGGCCR	1 cut(s)	219
EagI	CGGCCG	1 cut(s)	219
EclXI	CGGCCG	1 cut(s)	219
Eco31I	GGTCTC	1 cut(s)	79
Eco52I	CGGCCG	1 cut(s)	219
FaeI	CATG	2 cut(s)	47, 410
FatI	CATG	2 cut(s)	43, 406
FbaI	TGATCA	1 cut(s)	339
FblI	GTMKAC	1 cut(s)	441
FokI	GGATG	1 cut(s)	179
FspBI	CTAG	2 cut(s)	401, 413
GsuI	CTGGAG	1 cut(s)	493
HaeIII	GGCC	2 cut(s)	221, 417
HapII	CCGG	1 cut(s)	164
HgaI	GACGC	1 cut(s)	141
Hin1I	GRCGYC	1 cut(s)	152
Hin1II	CATG	2 cut(s)	47, 410
HindIII	AAGCTT	2 cut(s)	115, 425
HinfI	GANTC	1 cut(s)	69
HpaII	CCGG	1 cut(s)	164
HphI	GGTGA	2 cut(s)	214, 310
Hpy166II	GTNNAC	2 cut(s)	216, 442
Hpy188I	TCNGA	4 cut(s)	19, 34, 178, 270
Hpy188III	TCNNGA	7 cut(s)	12, 111, 248, 343, 361, 407, 499
Hpy8I	GTNNAC	2 cut(s)	216, 442
Hpy99I	CGWCG	2 cut(s)	157, 214
HpyAV	CCTTC	1 cut(s)	265
HpyCH4III	ACNGT	2 cut(s)	293, 437
HpyCH4IV	ACGT	1 cut(s)	212
HpyCH4V	TGCA	2 cut(s)	372, 541
HpyF10VI	GCNNNNNNNGC	3 cut(s)	104, 149, 401
HpyF3I	CTNAG	2 cut(s)	350, 500
HpySE526I	ACGT	1 cut(s)	212
Hsp92I	GRCGYC	1 cut(s)	152
Hsp92II	CATG	2 cut(s)	47, 410
Ksp22I	TGATCA	1 cut(s)	339
Kzo9I	GATC	4 cut(s)	14, 339, 345, 462
LpnPI	CCDG	9 cut(s)	61, 106, 114, 177, 180, 185, 369, 512, 523
MaeI	CTAG	2 cut(s)	401, 413
MaeII	ACGT	1 cut(s)	212
MaeIII	GTNAC	3 cut(s)	202, 316, 474
MalI	GATC	4 cut(s)	16, 341, 347, 464
MboI	GATC	4 cut(s)	14, 339, 345, 462
MboII	GAAGA	3 cut(s)	112, 292, 439
MflI	RGATCY	2 cut(s)	345, 462
MhlI	GDGCHC	1 cut(s)	145
MluCI	AATT	1 cut(s)	387
MmeI	TCCRAC	2 cut(s)	30, 256
MnlI	CCTC	8 cut(s)	83, 99, 174, 182, 253, 289, 298, 376
MseI	TTAA	1 cut(s)	429
MspI	CCGG	1 cut(s)	164
MwoI	GCNNNNNNNGC	3 cut(s)	104, 149, 401
NdeII	GATC	4 cut(s)	14, 339, 345, 462
NlaIII	CATG	2 cut(s)	47, 410
NlaIV	GGNNCC	1 cut(s)	142
NmuCI	GTSAC	2 cut(s)	202, 316
NspV	TTCGAA	1 cut(s)	123
PagI	TCATGA	1 cut(s)	406
PfeI	GAWTC	1 cut(s)	69
Pfl23II	CGTACG	1 cut(s)	467
PsiI	TTATAA	1 cut(s)	577
PspLI	CGTACG	1 cut(s)	467
PspN4I	GGNNCC	1 cut(s)	142
PsuI	RGATCY	2 cut(s)	345, 462
RsaI	GTAC	3 cut(s)	217, 290, 469
RsaNI	GTAC	3 cut(s)	216, 289, 468
SaqAI	TTAA	1 cut(s)	429
Sau3AI	GATC	4 cut(s)	14, 339, 345, 462
SduI	GDGCHC	1 cut(s)	145
SfuI	TTCGAA	1 cut(s)	123
Sse9I	AATT	1 cut(s)	387
SspMI	CTAG	2 cut(s)	401, 413
TaaI	ACNGT	2 cut(s)	293, 437
TaiI	ACGT	1 cut(s)	215
TaqI	TCGA	3 cut(s)	123, 303, 567
TasI	AATT	1 cut(s)	387
TatI	WGTACW	1 cut(s)	288
TfiI	GAWTC	1 cut(s)	69
Tru1I	TTAA	1 cut(s)	429
Tru9I	TTAA	1 cut(s)	429
TscAI	CASTG	2 cut(s)	298, 442
TseFI	GTSAC	2 cut(s)	202, 316
Tsp45I	GTSAC	2 cut(s)	202, 316
TspDTI	ATGAA	4 cut(s)	267, 342, 439, 512
TspGWI	ACGGA	1 cut(s)	455
TspRI	CASTG	2 cut(s)	298, 442
XmiI	GTMKAC	1 cut(s)	441
XspI	CTAG	2 cut(s)	401, 413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.