Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002707

Physical Location & Seq

Genomic Coordinates Forward (+)

12514816 .. 12516931

Gene Structure 2116 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00228160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGAATATGAGGTTGTTCGGAAGGTTGGAAAAGGAAAGTACAGTGAGGTCTTCGAGGGCCAACAATGAAAAATGCGTGATCAAGATCCTTAGACCAGTCAAGAAAAAGTGCAAAAATGATGAGGAAATTGTAGCTGTTCTAGCTCATGAGCTAGGCCATTGGAAGCTTAATCACAGTGTATACTTCTTCATTTCTATACAGATCCGTACGCTGTTACACTTTGGGGGATATGCTCTCCTGAGAAACTCCAGCAGTCTGTTTCATACGTTGGGGGATATGCAGTCCTACTTTGTTGAATGGTCATTCGATGGGTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016021 GO:0016485 GO:0016787 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0070011 GO:0071586 GO:0071704 GO:0080120 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Peptidase_M48 Peptidase_M48_N

Protein Analysis

105

Amino Acids

12.25

Weight (kDa)

9.47

Isoelectric Point (pI)

35.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M48	PF01435	30 - 91	9.5e-11	Peptidase family M48

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002707)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33300 FvH4_2g33300 FvH4_2g33300 FvH4_2g33300 FvH4_2g33300
malus_domestica	MD08G1087400.v1.1 MD15G1072400.v1.1 MD15G1314700.v1.1
prunus_persica	Prupe.1G425000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0357221 RchiOBHm_Chr1g0362391 RchiOBHm_Chr2g0131551 RchiOBHm_Chr6g0309321
rosa_laevigata	RLG00000009840 RLG00000010574 RLG00000021364 RLG00000031506
rosa_multiflora	Rmu_sc0003576.1_g000007 Rmu_sc0015692.1_g000002
rosa_roxburghii	Rroxscaffold_3G00228160 Rroxscaffold_6G00412270 Rroxscaffold_7G00159490
rosa_rugosa	Rorug01G0255000 Rorug05G0444500 Rorug05G0444500 Rorug06G0371000
rosa_samantha	Rh2BG357900 Rh5AG062100 Rh5AG134700 Rh5BG310400 Rh5DG320900 Rh6AG235600 Rh6AG484400 Rh6BG493500 Rh6CG498300 Rh6DG484800
rosa_wichuraiana	Rw6G028820 Rw6G042170 Rw7G020100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	316
AccI	GTMKAC	1 cut(s)	180
AclWI	GGATC	2 cut(s)	79, 196
AfaI	GTAC	2 cut(s)	40, 208
AgsI	TTSAA	1 cut(s)	296
AluBI	AGCT	4 cut(s)	134, 143, 151, 166
AluI	AGCT	4 cut(s)	134, 143, 151, 166
AlwI	GGATC	2 cut(s)	79, 196
AoxI	GGCC	2 cut(s)	57, 154
AspS9I	GGNCC	1 cut(s)	57
BbsI	GAAGAC	1 cut(s)	42
BccI	CCATC	1 cut(s)	302
BclI	TGATCA	1 cut(s)	78
BfaI	CTAG	2 cut(s)	140, 152
BmgT120I	GGNCC	1 cut(s)	57
BpiI	GAAGAC	1 cut(s)	42
BpmI	CTGGAG	1 cut(s)	232
BsaBI	GATNNNNATC	1 cut(s)	83
Bse1I	ACTGG	1 cut(s)	95
Bse8I	GATNNNNATC	1 cut(s)	83
BseJI	GATNNNNATC	1 cut(s)	83
BseMII	CTCAG	1 cut(s)	230
BseNI	ACTGG	1 cut(s)	95
BshFI	GGCC	2 cut(s)	59, 156
BsiWI	CGTACG	1 cut(s)	206
BsnI	GGCC	2 cut(s)	59, 156
Bsp143I	GATC	3 cut(s)	78, 84, 201
BspANI	GGCC	2 cut(s)	59, 156
BspCNI	CTCAG	1 cut(s)	231
BspHI	TCATGA	1 cut(s)	145
BspPI	GGATC	2 cut(s)	79, 196
BsrI	ACTGG	1 cut(s)	95
BssMI	GATC	3 cut(s)	78, 84, 201
BssNAI	GTATAC	1 cut(s)	181
Bst1107I	GTATAC	1 cut(s)	181
Bst4CI	ACNGT	2 cut(s)	43, 176
BstDEI	CTNAG	2 cut(s)	89, 239
BstKTI	GATC	3 cut(s)	81, 87, 204
BstMBI	GATC	3 cut(s)	78, 84, 201
BstMWI	GCNNNNNNNGC	1 cut(s)	140
BstV2I	GAAGAC	1 cut(s)	42
BstX2I	RGATCY	2 cut(s)	84, 201
BstYI	RGATCY	2 cut(s)	84, 201
BstZ17I	GTATAC	1 cut(s)	181
BsuRI	GGCC	2 cut(s)	59, 156
BtsIMutI	CAGTG	2 cut(s)	48, 181
CciI	TCATGA	1 cut(s)	145
Cfr13I	GGNCC	1 cut(s)	57
Csp6I	GTAC	2 cut(s)	39, 207
CviAII	CATG	1 cut(s)	146
CviJI	RGCY	6 cut(s)	59, 134, 143, 151, 156, 166
CviKI_1	RGCY	6 cut(s)	59, 134, 143, 151, 156, 166
CviQI	GTAC	2 cut(s)	39, 207
DdeI	CTNAG	2 cut(s)	89, 239
DpnI	GATC	3 cut(s)	80, 86, 203
DpnII	GATC	3 cut(s)	78, 84, 201
FaeI	CATG	1 cut(s)	149
FaiI	YATR	8 cut(s)	8, 147, 181, 197, 231, 264, 278, 316
FatI	CATG	1 cut(s)	145
FbaI	TGATCA	1 cut(s)	78
FblI	GTMKAC	1 cut(s)	180
FspBI	CTAG	2 cut(s)	140, 152
GsuI	CTGGAG	1 cut(s)	232
HaeIII	GGCC	2 cut(s)	59, 156
Hin1II	CATG	1 cut(s)	149
HindIII	AAGCTT	1 cut(s)	164
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	1 cut(s)	20
Hpy188III	TCNNGA	4 cut(s)	82, 100, 146, 238
Hpy8I	GTNNAC	1 cut(s)	181
HpyAV	CCTTC	1 cut(s)	15
HpyCH4III	ACNGT	2 cut(s)	43, 176
HpyCH4IV	ACGT	1 cut(s)	266
HpyCH4V	TGCA	2 cut(s)	111, 280
HpyF10VI	GCNNNNNNNGC	1 cut(s)	140
HpyF3I	CTNAG	2 cut(s)	89, 239
HpySE526I	ACGT	1 cut(s)	266
Hsp92II	CATG	1 cut(s)	149
Ksp22I	TGATCA	1 cut(s)	78
Kzo9I	GATC	3 cut(s)	78, 84, 201
LpnPI	CCDG	3 cut(s)	108, 251, 262
MaeI	CTAG	2 cut(s)	140, 152
MaeII	ACGT	1 cut(s)	266
MaeIII	GTNAC	1 cut(s)	213
MalI	GATC	3 cut(s)	80, 86, 203
MboI	GATC	3 cut(s)	78, 84, 201
MboII	GAAGA	2 cut(s)	42, 178
MflI	RGATCY	2 cut(s)	84, 201
MluCI	AATT	1 cut(s)	126
MmeI	TCCRAC	1 cut(s)	6
MnlI	CCTC	4 cut(s)	3, 39, 48, 115
MseI	TTAA	1 cut(s)	168
MwoI	GCNNNNNNNGC	1 cut(s)	140
NdeII	GATC	3 cut(s)	78, 84, 201
NlaIII	CATG	1 cut(s)	149
PagI	TCATGA	1 cut(s)	145
Pfl23II	CGTACG	1 cut(s)	206
PsiI	TTATAA	1 cut(s)	316
PspLI	CGTACG	1 cut(s)	206
PspPI	GGNCC	1 cut(s)	57
PsuI	RGATCY	2 cut(s)	84, 201
RsaI	GTAC	2 cut(s)	40, 208
RsaNI	GTAC	2 cut(s)	39, 207
SaqAI	TTAA	1 cut(s)	168
Sau3AI	GATC	3 cut(s)	78, 84, 201
Sau96I	GGNCC	1 cut(s)	57
SetI	ASST	8 cut(s)	14, 26, 50, 136, 145, 153, 168, 269
Sse9I	AATT	1 cut(s)	126
SspMI	CTAG	2 cut(s)	140, 152
TaaI	ACNGT	2 cut(s)	43, 176
TaiI	ACGT	1 cut(s)	269
TaqI	TCGA	2 cut(s)	53, 306
TasI	AATT	1 cut(s)	126
TatI	WGTACW	1 cut(s)	38
Tru1I	TTAA	1 cut(s)	168
Tru9I	TTAA	1 cut(s)	168
TscAI	CASTG	2 cut(s)	48, 181
TspDTI	ATGAA	4 cut(s)	17, 81, 178, 251
TspGWI	ACGGA	1 cut(s)	194
TspRI	CASTG	2 cut(s)	48, 181
XmiI	GTMKAC	1 cut(s)	180
XspI	CTAG	2 cut(s)	140, 152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.