Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002707

Physical Location & Seq

Genomic Coordinates Reverse (-)

47880327 .. 47882298

Gene Structure 1972 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50289

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGATGAATAAACTGACTAGGAGATTATCCAAAATACCCGATGAGGTTCAGAGTGAAATAGAGCCTTACTTTATGAATACTGCTCCTGTTGTGGAGGAGGATGGCAGGAAACTGCAGAAACTTGACTACAATACTGCGGGCTTTGTCCATACTGGTTTAACTTGCAAAAATGATGAGGAAATTGTAGCTGTTCTAGCTCGTGAGCTAGGCCATTGGAAGCTTAATCACAGTGTATACTTATTCATTTCTATACAGATCCGTACGCTGTTACACTTTGGGGGATATGCTCTCTTGAGAAACTCTAGCAGTCTGTTTCATTCTTTGGGGGATATGCAGTCCTACTTTGTTGAATGGTCTTCAATGGGTTATAATAATAATGTGCTTCAAGGAAGCACCTTAAGTGGCTCAACATCAACAAATACAGATGACAGACCTTACGTTTACAATCCAATGAAAAAAGGGATAAGGGAAGCTTGGCAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016021 GO:0016485 GO:0016787 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0070011 GO:0071586 GO:0071704 GO:0080120 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Peptidase_M48 Peptidase_M48_N

Protein Analysis

161

Amino Acids

18.42

Weight (kDa)

6.2

Isoelectric Point (pI)

35.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M48	PF01435	54 - 109	4.8e-08	Peptidase family M48

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002707)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33300 FvH4_2g33300 FvH4_2g33300 FvH4_2g33300 FvH4_2g33300
malus_domestica	MD08G1087400.v1.1 MD15G1072400.v1.1 MD15G1314700.v1.1
prunus_persica	Prupe.1G425000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0357221 RchiOBHm_Chr1g0362391 RchiOBHm_Chr2g0131551 RchiOBHm_Chr6g0309321
rosa_laevigata	RLG00000009840 RLG00000010574 RLG00000021364 RLG00000031506
rosa_multiflora	Rmu_sc0003576.1_g000007 Rmu_sc0015692.1_g000002
rosa_roxburghii	Rroxscaffold_3G00228160 Rroxscaffold_6G00412270 Rroxscaffold_7G00159490
rosa_rugosa	Rorug01G0255000 Rorug05G0444500 Rorug05G0444500 Rorug06G0371000
rosa_samantha	Rh2BG357900 Rh5AG062100 Rh5AG134700 Rh5BG310400 Rh5DG320900 Rh6AG235600 Rh6AG484400 Rh6BG493500 Rh6CG498300 Rh6DG484800
rosa_wichuraiana	Rw6G028820 Rw6G042170 Rw7G020100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	369
AccI	GTMKAC	1 cut(s)	234
AciI	CCGC	1 cut(s)	137
AclWI	GGATC	1 cut(s)	250
AfaI	GTAC	1 cut(s)	262
AflII	CTTAAG	1 cut(s)	397
AgsI	TTSAA	3 cut(s)	350, 360, 386
AluBI	AGCT	5 cut(s)	188, 197, 205, 220, 473
AluI	AGCT	5 cut(s)	188, 197, 205, 220, 473
AlwI	GGATC	1 cut(s)	250
AoxI	GGCC	1 cut(s)	208
BauI	CACGAG	1 cut(s)	198
BbsI	GAAGAC	1 cut(s)	348
BccI	CCATC	1 cut(s)	95
BfaI	CTAG	4 cut(s)	18, 194, 206, 303
BfmI	CTRYAG	1 cut(s)	113
BfrI	CTTAAG	1 cut(s)	397
BpiI	GAAGAC	1 cut(s)	348
BpuEI	CTTGAG	1 cut(s)	313
Bse1I	ACTGG	1 cut(s)	157
BseGI	GGATG	1 cut(s)	106
BseNI	ACTGG	1 cut(s)	157
BseRI	GAGGAG	1 cut(s)	110
BshFI	GGCC	1 cut(s)	210
BsiWI	CGTACG	1 cut(s)	260
BsnI	GGCC	1 cut(s)	210
Bsp143I	GATC	1 cut(s)	255
BspACI	CCGC	1 cut(s)	137
BspANI	GGCC	1 cut(s)	210
BspMAI	CTGCAG	1 cut(s)	117
BspPI	GGATC	1 cut(s)	250
BspTI	CTTAAG	1 cut(s)	397
BsrI	ACTGG	1 cut(s)	157
BssMI	GATC	1 cut(s)	255
BssNAI	GTATAC	1 cut(s)	235
BssSI	CACGAG	1 cut(s)	198
Bst1107I	GTATAC	1 cut(s)	235
Bst2BI	CACGAG	1 cut(s)	198
Bst4CI	ACNGT	1 cut(s)	230
BstAFI	CTTAAG	1 cut(s)	397
BstC8I	GCNNGC	1 cut(s)	139
BstF5I	GGATG	1 cut(s)	106
BstKTI	GATC	1 cut(s)	258
BstMBI	GATC	1 cut(s)	255
BstMWI	GCNNNNNNNGC	1 cut(s)	194
BstSFI	CTRYAG	1 cut(s)	113
BstV2I	GAAGAC	1 cut(s)	348
BstX2I	RGATCY	1 cut(s)	255
BstYI	RGATCY	1 cut(s)	255
BstZ17I	GTATAC	1 cut(s)	235
BsuRI	GGCC	1 cut(s)	210
BtsCI	GGATG	1 cut(s)	106
BtsIMutI	CAGTG	1 cut(s)	235
Cac8I	GCNNGC	1 cut(s)	139
Csp6I	GTAC	1 cut(s)	261
CviJI	RGCY	9 cut(s)	64, 141, 188, 197, 205, 210, 220, 405, 473
CviKI_1	RGCY	9 cut(s)	64, 141, 188, 197, 205, 210, 220, 405, 473
CviQI	GTAC	1 cut(s)	261
DpnI	GATC	1 cut(s)	257
DpnII	GATC	1 cut(s)	255
FaiI	YATR	7 cut(s)	74, 150, 235, 251, 285, 332, 369
FalI	AAGNNNNNCTT	1 cut(s)	457
FauI	CCCGC	1 cut(s)	130
FblI	GTMKAC	1 cut(s)	234
FokI	GGATG	1 cut(s)	113
FspBI	CTAG	4 cut(s)	18, 194, 206, 303
HaeIII	GGCC	1 cut(s)	210
HindIII	AAGCTT	2 cut(s)	218, 471
Hpy166II	GTNNAC	2 cut(s)	235, 442
Hpy188I	TCNGA	1 cut(s)	51
Hpy188III	TCNNGA	2 cut(s)	200, 292
Hpy8I	GTNNAC	2 cut(s)	235, 442
HpyCH4III	ACNGT	1 cut(s)	230
HpyCH4IV	ACGT	1 cut(s)	438
HpyCH4V	TGCA	3 cut(s)	115, 165, 334
HpyF10VI	GCNNNNNNNGC	1 cut(s)	194
HpySE526I	ACGT	1 cut(s)	438
Kzo9I	GATC	1 cut(s)	255
LmnI	GCTCC	1 cut(s)	88
LpnPI	CCDG	4 cut(s)	91, 99, 138, 464
MaeI	CTAG	4 cut(s)	18, 194, 206, 303
MaeII	ACGT	1 cut(s)	438
MaeIII	GTNAC	1 cut(s)	267
MalI	GATC	1 cut(s)	257
MboI	GATC	1 cut(s)	255
MboII	GAAGA	1 cut(s)	348
MflI	RGATCY	1 cut(s)	255
MluCI	AATT	1 cut(s)	180
MnlI	CCTC	4 cut(s)	37, 88, 91, 169
MseI	TTAA	3 cut(s)	158, 222, 398
MspCI	CTTAAG	1 cut(s)	397
MwoI	GCNNNNNNNGC	1 cut(s)	194
NdeII	GATC	1 cut(s)	255
Pfl23II	CGTACG	1 cut(s)	260
PsiI	TTATAA	1 cut(s)	369
PspLI	CGTACG	1 cut(s)	260
PstI	CTGCAG	1 cut(s)	117
PsuI	RGATCY	1 cut(s)	255
RsaI	GTAC	1 cut(s)	262
RsaNI	GTAC	1 cut(s)	261
SaqAI	TTAA	3 cut(s)	158, 222, 398
Sau3AI	GATC	1 cut(s)	255
SetI	ASST	9 cut(s)	48, 190, 199, 207, 222, 398, 436, 441, 475
SfcI	CTRYAG	1 cut(s)	113
SmlI	CTYRAG	2 cut(s)	292, 397
SmoI	CTYRAG	2 cut(s)	292, 397
Sse9I	AATT	1 cut(s)	180
SsiI	CCGC	1 cut(s)	137
SspMI	CTAG	4 cut(s)	18, 194, 206, 303
TaaI	ACNGT	1 cut(s)	230
TaiI	ACGT	1 cut(s)	441
TasI	AATT	1 cut(s)	180
Tru1I	TTAA	3 cut(s)	158, 222, 398
Tru9I	TTAA	3 cut(s)	158, 222, 398
TscAI	CASTG	1 cut(s)	235
TspDTI	ATGAA	5 cut(s)	20, 89, 232, 305, 467
TspGWI	ACGGA	1 cut(s)	248
TspRI	CASTG	1 cut(s)	235
Vha464I	CTTAAG	1 cut(s)	397
XmiI	GTMKAC	1 cut(s)	234
XspI	CTAG	4 cut(s)	18, 194, 206, 303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.