Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002707

Physical Location & Seq

Genomic Coordinates Forward (+)

5718324 .. 5719866

Gene Structure 1543 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031506

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGTGCTTCGGGAAGATTCTTCGAAGCTGGTGTTGATGGTGCCCTTACGGCGTCGTATCTACTGGATGGGTTTTCGGAGAGGACACGAGGGGCAGGACTGGGGTGATGTTGTTCAAGTTGACACTTGGGTTAGTGCCCCAGGGAAGAATGTGTGCGGACTGACTAGGAGATTATCCAAAATACCTGATGAGGTTCGGAGTGAAATAGAGCCTTACTTTATGAATTCTTCTCCTGTTGTGGAGGAGGATGGCAGGAAACTGCAGAAACTTGACGACAATATTGCGGGCTTTTGCAAAAATGATGAGGAAATTGTAGCTGTTCTAGCTCATGAGCTAGGCCATTGGAAGCTTAATCACAGTGTATACTTATTCATTTCTATACAGATCCGTACGCTGTTACAGTTTGGGGGATATGCTCTCCTGAGAAACTCTAGCAGTCTGTTTCATTCTTTGGGGGATATGCAATCCTACTTTGTTGAATGGTCTTCAATGGCTTATAATAATAATGTGCTTCAGGGAAGCACCTTAAGTGGCTCAACATCAACAAATACAGATGACAGACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016021 GO:0016485 GO:0016787 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0070011 GO:0071586 GO:0071704 GO:0080120 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Peptidase_M48 Peptidase_M48_N

Protein Analysis

189

Amino Acids

21.42

Weight (kDa)

5.95

Isoelectric Point (pI)

54.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M48	PF01435	97 - 154	1.8e-10	Peptidase family M48

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002707)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33300 FvH4_2g33300 FvH4_2g33300 FvH4_2g33300 FvH4_2g33300
malus_domestica	MD08G1087400.v1.1 MD15G1072400.v1.1 MD15G1314700.v1.1
prunus_persica	Prupe.1G425000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0357221 RchiOBHm_Chr1g0362391 RchiOBHm_Chr2g0131551 RchiOBHm_Chr6g0309321
rosa_laevigata	RLG00000009840 RLG00000010574 RLG00000021364 RLG00000031506
rosa_multiflora	Rmu_sc0003576.1_g000007 Rmu_sc0015692.1_g000002
rosa_roxburghii	Rroxscaffold_3G00228160 Rroxscaffold_6G00412270 Rroxscaffold_7G00159490
rosa_rugosa	Rorug01G0255000 Rorug05G0444500 Rorug05G0444500 Rorug06G0371000
rosa_samantha	Rh2BG357900 Rh5AG062100 Rh5AG134700 Rh5BG310400 Rh5DG320900 Rh6AG235600 Rh6AG484400 Rh6BG493500 Rh6CG498300 Rh6DG484800
rosa_wichuraiana	Rw6G028820 Rw6G042170 Rw7G020100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	498
AccB1I	GGYRCC	1 cut(s)	40
AccI	GTMKAC	1 cut(s)	363
AciI	CCGC	2 cut(s)	156, 284
AclWI	GGATC	1 cut(s)	379
AcsI	RAATTY	1 cut(s)	223
AcuI	CTGAAG	1 cut(s)	497
AcyI	GRCGYC	1 cut(s)	52
AfaI	GTAC	1 cut(s)	391
AflII	CTTAAG	1 cut(s)	526
AgsI	TTSAA	3 cut(s)	116, 479, 489
AjnI	CCWGG	1 cut(s)	139
AluBI	AGCT	5 cut(s)	28, 317, 326, 334, 349
AluI	AGCT	5 cut(s)	28, 317, 326, 334, 349
AlwI	GGATC	1 cut(s)	379
AoxI	GGCC	1 cut(s)	337
ApoI	RAATTY	1 cut(s)	223
AsuHPI	GGTGA	1 cut(s)	116
AsuII	TTCGAA	1 cut(s)	23
BaeGI	GKGCMC	2 cut(s)	45, 139
BanI	GGYRCC	1 cut(s)	40
BauI	CACGAG	1 cut(s)	86
BbsI	GAAGAC	1 cut(s)	477
BccI	CCATC	3 cut(s)	31, 61, 242
BceAI	ACGGC	1 cut(s)	65
BcgI	CGANNNNNNTGC	2 cut(s)	263, 297
BciT130I	CCWGG	1 cut(s)	141
BfaI	CTAG	4 cut(s)	165, 323, 335, 432
BfmI	CTRYAG	1 cut(s)	260
BfrI	CTTAAG	1 cut(s)	526
BglI	GCCNNNNNGGC	1 cut(s)	49
Bme1390I	CCNGG	1 cut(s)	141
BmiI	GGNNCC	1 cut(s)	42
BmrFI	CCNGG	1 cut(s)	141
BmrI	ACTGGG	1 cut(s)	109
BmuI	ACTGGG	1 cut(s)	109
BpiI	GAAGAC	1 cut(s)	477
Bpu14I	TTCGAA	1 cut(s)	23
BsaHI	GRCGYC	1 cut(s)	52
BsaJI	CCNNGG	2 cut(s)	139, 140
Bse1I	ACTGG	2 cut(s)	68, 104
BseBI	CCWGG	1 cut(s)	141
BseDI	CCNNGG	2 cut(s)	139, 140
BseGI	GGATG	2 cut(s)	72, 253
BseMII	CTCAG	1 cut(s)	413
BseNI	ACTGG	2 cut(s)	68, 104
BseRI	GAGGAG	1 cut(s)	257
BseSI	GKGCMC	2 cut(s)	45, 139
BshFI	GGCC	1 cut(s)	339
BshNI	GGYRCC	1 cut(s)	40
BsiWI	CGTACG	1 cut(s)	389
BsnI	GGCC	1 cut(s)	339
Bsp119I	TTCGAA	1 cut(s)	23
Bsp1286I	GDGCHC	2 cut(s)	45, 139
Bsp143I	GATC	1 cut(s)	384
BspACI	CCGC	2 cut(s)	156, 284
BspANI	GGCC	1 cut(s)	339
BspCNI	CTCAG	1 cut(s)	414
BspHI	TCATGA	1 cut(s)	328
BspLI	GGNNCC	1 cut(s)	42
BspMAI	CTGCAG	1 cut(s)	264
BspPI	GGATC	1 cut(s)	379
BspT104I	TTCGAA	1 cut(s)	23
BspT107I	GGYRCC	1 cut(s)	40
BspTI	CTTAAG	1 cut(s)	526
BsrI	ACTGG	2 cut(s)	68, 104
BssECI	CCNNGG	2 cut(s)	139, 140
BssMI	GATC	1 cut(s)	384
BssNAI	GTATAC	1 cut(s)	364
BssNI	GRCGYC	1 cut(s)	52
BssSI	CACGAG	1 cut(s)	86
Bst1107I	GTATAC	1 cut(s)	364
Bst2BI	CACGAG	1 cut(s)	86
Bst2UI	CCWGG	1 cut(s)	141
Bst4CI	ACNGT	2 cut(s)	359, 402
BstACI	GRCGYC	1 cut(s)	52
BstAFI	CTTAAG	1 cut(s)	526
BstBI	TTCGAA	1 cut(s)	23
BstC8I	GCNNGC	1 cut(s)	286
BstDEI	CTNAG	1 cut(s)	422
BstF5I	GGATG	2 cut(s)	72, 253
BstKTI	GATC	1 cut(s)	387
BstMBI	GATC	1 cut(s)	384
BstMWI	GCNNNNNNNGC	2 cut(s)	49, 323
BstNI	CCWGG	1 cut(s)	141
BstSCI	CCNGG	1 cut(s)	139
BstSFI	CTRYAG	1 cut(s)	260
BstSLI	GKGCMC	2 cut(s)	45, 139
BstV2I	GAAGAC	1 cut(s)	477
BstX2I	RGATCY	1 cut(s)	384
BstYI	RGATCY	1 cut(s)	384
BstZ17I	GTATAC	1 cut(s)	364
BsuRI	GGCC	1 cut(s)	339
BtsCI	GGATG	2 cut(s)	72, 253
BtsIMutI	CAGTG	1 cut(s)	364
Cac8I	GCNNGC	1 cut(s)	286
CciI	TCATGA	1 cut(s)	328
CseI	GACGC	1 cut(s)	41
Csp6I	GTAC	1 cut(s)	390
CviAII	CATG	1 cut(s)	329
CviQI	GTAC	1 cut(s)	390
DdeI	CTNAG	1 cut(s)	422
DpnI	GATC	1 cut(s)	386
DpnII	GATC	1 cut(s)	384
Eco57I	CTGAAG	1 cut(s)	497
EcoRI	GAATTC	1 cut(s)	223
EcoRII	CCWGG	1 cut(s)	139
FaeI	CATG	1 cut(s)	332
FaiI	YATR	7 cut(s)	221, 330, 364, 380, 414, 461, 498
FatI	CATG	1 cut(s)	328
FauI	CCCGC	1 cut(s)	277
FblI	GTMKAC	1 cut(s)	363
FokI	GGATG	2 cut(s)	79, 260
FspBI	CTAG	4 cut(s)	165, 323, 335, 432
HaeIII	GGCC	1 cut(s)	339
HgaI	GACGC	1 cut(s)	41
Hin1I	GRCGYC	1 cut(s)	52
Hin1II	CATG	1 cut(s)	332
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HindIII	AAGCTT	1 cut(s)	347
HinfI	GANTC	1 cut(s)	17
HphI	GGTGA	1 cut(s)	116
Hpy166II	GTNNAC	2 cut(s)	121, 364
Hpy188I	TCNGA	2 cut(s)	78, 198
Hpy188III	TCNNGA	3 cut(s)	11, 329, 421
Hpy8I	GTNNAC	2 cut(s)	121, 364
Hpy99I	CGWCG	1 cut(s)	57
HpyCH4III	ACNGT	2 cut(s)	359, 402
HpyCH4V	TGCA	3 cut(s)	262, 294, 463
HpyF10VI	GCNNNNNNNGC	2 cut(s)	49, 323
HpyF3I	CTNAG	1 cut(s)	422
Hsp92I	GRCGYC	1 cut(s)	52
Hsp92II	CATG	1 cut(s)	332
Kzo9I	GATC	1 cut(s)	384
MaeI	CTAG	4 cut(s)	165, 323, 335, 432
MaeIII	GTNAC	1 cut(s)	396
MalI	GATC	1 cut(s)	386
MboI	GATC	1 cut(s)	384
MboII	GAAGA	5 cut(s)	12, 26, 157, 219, 477
MflI	RGATCY	1 cut(s)	384
MhlI	GDGCHC	2 cut(s)	45, 139
MluCI	AATT	2 cut(s)	223, 309
MnlI	CCTC	6 cut(s)	74, 82, 184, 235, 238, 298
MseI	TTAA	3 cut(s)	351, 527, 565
MspCI	CTTAAG	1 cut(s)	526
MspR9I	CCNGG	1 cut(s)	141
MvaI	CCWGG	1 cut(s)	141
MwoI	GCNNNNNNNGC	2 cut(s)	49, 323
NdeII	GATC	1 cut(s)	384
NlaIII	CATG	1 cut(s)	332
NlaIV	GGNNCC	1 cut(s)	42
NspV	TTCGAA	1 cut(s)	23
PagI	TCATGA	1 cut(s)	328
PasI	CCCWGGG	1 cut(s)	140
PfeI	GAWTC	1 cut(s)	17
Pfl23II	CGTACG	1 cut(s)	389
PsiI	TTATAA	1 cut(s)	498
Psp6I	CCWGG	1 cut(s)	139
PspGI	CCWGG	1 cut(s)	139
PspLI	CGTACG	1 cut(s)	389
PspN4I	GGNNCC	1 cut(s)	42
PstI	CTGCAG	1 cut(s)	264
PsuI	RGATCY	1 cut(s)	384
RsaI	GTAC	1 cut(s)	391
RsaNI	GTAC	1 cut(s)	390
SaqAI	TTAA	3 cut(s)	351, 527, 565
Sau3AI	GATC	1 cut(s)	384
ScrFI	CCNGG	1 cut(s)	141
SduI	GDGCHC	2 cut(s)	45, 139
SetI	ASST	9 cut(s)	30, 187, 195, 319, 328, 336, 351, 527, 565
SfcI	CTRYAG	1 cut(s)	260
SfuI	TTCGAA	1 cut(s)	23
SmlI	CTYRAG	1 cut(s)	526
SmoI	CTYRAG	1 cut(s)	526
Sse9I	AATT	2 cut(s)	223, 309
SsiI	CCGC	2 cut(s)	156, 284
SspI	AATATT	1 cut(s)	280
SspMI	CTAG	4 cut(s)	165, 323, 335, 432
StyD4I	CCNGG	1 cut(s)	139
TaaI	ACNGT	2 cut(s)	359, 402
TaqI	TCGA	1 cut(s)	23
TasI	AATT	2 cut(s)	223, 309
TfiI	GAWTC	1 cut(s)	17
Tru1I	TTAA	3 cut(s)	351, 527, 565
Tru9I	TTAA	3 cut(s)	351, 527, 565
TscAI	CASTG	1 cut(s)	364
TspDTI	ATGAA	3 cut(s)	236, 361, 434
TspGWI	ACGGA	1 cut(s)	377
TspRI	CASTG	1 cut(s)	364
Vha464I	CTTAAG	1 cut(s)	526
XapI	RAATTY	1 cut(s)	223
XmiI	GTMKAC	1 cut(s)	363
XspI	CTAG	4 cut(s)	165, 323, 335, 432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.