Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0002707

Physical Location & Seq

Genomic Coordinates Reverse (-)

66349944 .. 66354344

Gene Structure 4401 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG484400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGTCTAGGGCTCGAGTCTACGCCGACGTCAACGTTCAGCGCCCTAGAGATTACTGGGATTACGAATCTTTCGTCCTTCAATGGGGTGTTCAAGATGAATATGAGGTTGTTCGGAAGGTTGGAAGAGGAAAGTACAGTGAGGTCTTCGAGGGTATAAATGTCACCAACAATGAAAAATGCGTGATCAAGATCCTTAAACCAGTCAAGAAAAAGAAGATTAAAAGGGAGATAAAAATATTACAGAATCTTTGTGGAGGTCCAAATATTGTGAAGCTGCTTGATATTGTCAGGGATGAGCTCTCAAAAACTCCTAGTTTAATCTTTGAACATGTCAACAGTACAGATTTCAAAGTGTTGTACCCCACACTGACAGATTACGACATTCGCTACTATATATATGAACTTCTCAAGGCATTGGATTACTGTCATTCCCAGGGCATAATGCATCGAGATGTGAAGCCTCACAACGTTATGATTGATCACGAGTTGCGGAAACTTCGCCTGATTGATTGGGGTCTTGCTGAATTCTACCATCCTGGCAAAGAATACAATGTCCGAGTAGCTTCAAGGCACTATAAAGGGCCTGAGCTCCTTGTTGATTTGCAAGACTATGACTATTCATTAGACATGTGGAGCCTTGGCTGTATGTTTGCAGGAATGATTTTTCGCAAGGAACAATTCTTTTATGGTCATGACAACCAGGACCAGCTAGTGAAAATCGCTAAGGTTCTTGGAACGGACGAGTTACATGCATACTTGACTAAATATCATCTTGTGCTTGAACCTCAGCTCGAGGCTCTTGTTGGAAGTCACAGCAGGAAGCCGTGGCAAAGATTTATTACTCCAGACAATCGGCATCTTGTTTCTTCAGAGGCCATCGATTTTCTAGACAAGCTTCTTCGATATGATCATCAGGACAGGCTTACTGCAAGAGAAGCAATGGCACATCCATACTTCTCAGAAGTGAGAAGCGCAGAAATTAGCCGGATGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0031974 GO:0031981 GO:0042752 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0065007 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169

Pfam Domains

Protein Families

Pkinase

Protein Analysis

331

Amino Acids

39.15

Weight (kDa)

7.71

Isoelectric Point (pI)

32.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	34 - 319	4e-63	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	36 - 240	1.3e-18	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002707)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33300 FvH4_2g33300 FvH4_2g33300 FvH4_2g33300 FvH4_2g33300
malus_domestica	MD08G1087400.v1.1 MD15G1072400.v1.1 MD15G1314700.v1.1
prunus_persica	Prupe.1G425000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0357221 RchiOBHm_Chr1g0362391 RchiOBHm_Chr2g0131551 RchiOBHm_Chr6g0309321
rosa_laevigata	RLG00000009840 RLG00000010574 RLG00000021364 RLG00000031506
rosa_multiflora	Rmu_sc0003576.1_g000007 Rmu_sc0015692.1_g000002
rosa_roxburghii	Rroxscaffold_3G00228160 Rroxscaffold_6G00412270 Rroxscaffold_7G00159490
rosa_rugosa	Rorug01G0255000 Rorug05G0444500 Rorug05G0444500 Rorug06G0371000
rosa_samantha	Rh2BG357900 Rh5AG062100 Rh5AG134700 Rh5BG310400 Rh5DG320900 Rh6AG235600 Rh6AG484400 Rh6BG493500 Rh6CG498300 Rh6DG484800
rosa_wichuraiana	Rw6G028820 Rw6G042170 Rw7G020100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	30
AccI	GTMKAC	1 cut(s)	18
AciI	CCGC	1 cut(s)	490
AclI	AACGTT	2 cut(s)	33, 468
AclWI	GGATC	1 cut(s)	184
AcsI	RAATTY	1 cut(s)	524
AcuI	CTGAAG	1 cut(s)	852
AcyI	GRCGYC	1 cut(s)	27
AfaI	GTAC	3 cut(s)	134, 340, 359
AfiI	CCNNNNNNNGG	1 cut(s)	82
AflIII	ACRYGT	2 cut(s)	328, 627
AgsI	TTSAA	6 cut(s)	80, 92, 326, 349, 567, 782
AjnI	CCWGG	3 cut(s)	432, 535, 699
AluBI	AGCT	7 cut(s)	274, 298, 563, 589, 709, 790, 895
AluI	AGCT	7 cut(s)	274, 298, 563, 589, 709, 790, 895
Alw21I	GWGCWC	2 cut(s)	300, 591
AlwI	GGATC	1 cut(s)	184
Ama87I	CYCGRG	2 cut(s)	12, 791
AoxI	GGCC	2 cut(s)	581, 873
ApeKI	GCWGC	1 cut(s)	274
ApoI	RAATTY	1 cut(s)	524
ArsI	GACNNNNNNTTYG	2 cut(s)	57, 89
AspLEI	GCGC	2 cut(s)	42, 974
AspS9I	GGNCC	3 cut(s)	257, 581, 703
AsuHPI	GGTGA	1 cut(s)	154
AvaI	CYCGRG	2 cut(s)	12, 791
AvaII	GGWCC	2 cut(s)	257, 703
BanII	GRGCYC	3 cut(s)	13, 300, 591
BauI	CACGAG	1 cut(s)	482
BbsI	GAAGAC	1 cut(s)	136
Bbv12I	GWGCWC	2 cut(s)	300, 591
BbvCI	CCTCAGC	1 cut(s)	786
BbvI	GCAGC	1 cut(s)	261
BccI	CCATC	2 cut(s)	540, 884
BceAI	ACGGC	1 cut(s)	808
BcgI	CGANNNNNNTGC	2 cut(s)	731, 765
BciT130I	CCWGG	3 cut(s)	434, 537, 701
BclI	TGATCA	3 cut(s)	183, 478, 907
BfaI	CTAG	5 cut(s)	6, 45, 312, 710, 887
BfoI	RGCGCY	1 cut(s)	43
BisI	GCNGC	1 cut(s)	275
BlsI	GCNGC	1 cut(s)	276
Bme1390I	CCNGG	3 cut(s)	434, 537, 701
Bme18I	GGWCC	2 cut(s)	257, 703
BmeT110I	CYCGRG	2 cut(s)	12, 791
BmgT120I	GGNCC	3 cut(s)	257, 581, 703
BmiI	GGNNCC	1 cut(s)	635
BmrFI	CCNGG	3 cut(s)	434, 537, 701
BmrI	ACTGGG	1 cut(s)	64
BmsI	GCATC	3 cut(s)	454, 865, 978
BmuI	ACTGGG	1 cut(s)	64
BpiI	GAAGAC	1 cut(s)	136
BpmI	CTGGAG	1 cut(s)	828
Bpu10I	CCTNAGC	3 cut(s)	585, 723, 786
BpuEI	CTTGAG	1 cut(s)	392
Bsa29I	ATCGAT	1 cut(s)	879
BsaBI	GATNNNNATC	1 cut(s)	188
BsaHI	GRCGYC	1 cut(s)	27
BsaJI	CCNNGG	4 cut(s)	432, 433, 637, 824
Bsc4I	CCNNNNNNNGG	1 cut(s)	82
Bse1I	ACTGG	2 cut(s)	59, 200
Bse3DI	GCAATG	1 cut(s)	945
Bse8I	GATNNNNATC	1 cut(s)	188
BseBI	CCWGG	3 cut(s)	434, 537, 701
BseCI	ATCGAT	1 cut(s)	879
BseDI	CCNNGG	4 cut(s)	432, 433, 637, 824
BseGI	GGATG	4 cut(s)	298, 532, 946, 993
BseJI	GATNNNNATC	1 cut(s)	188
BseLI	CCNNNNNNNGG	1 cut(s)	82
BseMI	GCAATG	1 cut(s)	945
BseMII	CTCAG	3 cut(s)	576, 800, 972
BseNI	ACTGG	2 cut(s)	59, 200
BseXI	GCAGC	1 cut(s)	261
BshFI	GGCC	2 cut(s)	583, 875
BshVI	ATCGAT	1 cut(s)	879
BsiHKAI	GWGCWC	2 cut(s)	300, 591
BsiHKCI	CYCGRG	2 cut(s)	12, 791
BsiSI	CCGG	1 cut(s)	985
BslI	CCNNNNNNNGG	1 cut(s)	82
BsnI	GGCC	2 cut(s)	583, 875
BsoBI	CYCGRG	2 cut(s)	12, 791
Bsp1286I	GDGCHC	3 cut(s)	13, 300, 591
Bsp143I	GATC	4 cut(s)	183, 189, 478, 907
BspACI	CCGC	1 cut(s)	490
BspANI	GGCC	2 cut(s)	583, 875
BspCNI	CTCAG	3 cut(s)	577, 799, 971
BspDI	ATCGAT	1 cut(s)	879
BspHI	TCATGA	1 cut(s)	691
BspLI	GGNNCC	1 cut(s)	635
BspPI	GGATC	1 cut(s)	184
BsrDI	GCAATG	1 cut(s)	945
BsrI	ACTGG	2 cut(s)	59, 200
BssECI	CCNNGG	4 cut(s)	432, 433, 637, 824
BssMI	GATC	4 cut(s)	183, 189, 478, 907
BssNI	GRCGYC	1 cut(s)	27
BssSI	CACGAG	1 cut(s)	482
BssT1I	CCWWGG	1 cut(s)	637
Bst2BI	CACGAG	1 cut(s)	482
Bst2UI	CCWGG	3 cut(s)	434, 537, 701
Bst4CI	ACNGT	3 cut(s)	137, 338, 425
Bst6I	CTCTTC	1 cut(s)	118
BstACI	GRCGYC	1 cut(s)	27
BstDEI	CTNAG	4 cut(s)	585, 723, 786, 958
BstDSI	CCRYGG	1 cut(s)	824
BstF5I	GGATG	4 cut(s)	298, 532, 946, 993
BstH2I	RGCGCY	1 cut(s)	43
BstHHI	GCGC	2 cut(s)	42, 974
BstKTI	GATC	4 cut(s)	186, 192, 481, 910
BstMBI	GATC	4 cut(s)	183, 189, 478, 907
BstMWI	GCNNNNNNNGC	1 cut(s)	935
BstNI	CCWGG	3 cut(s)	434, 537, 701
BstNSI	RCATGY	3 cut(s)	332, 631, 752
BstSCI	CCNGG	3 cut(s)	432, 535, 699
BstV1I	GCAGC	1 cut(s)	261
BstV2I	GAAGAC	1 cut(s)	136
BstX2I	RGATCY	1 cut(s)	189
BstYI	RGATCY	1 cut(s)	189
Bsu15I	ATCGAT	1 cut(s)	879
BsuRI	GGCC	2 cut(s)	583, 875
BsuTUI	ATCGAT	1 cut(s)	879
BtgI	CCRYGG	1 cut(s)	824
BtsCI	GGATG	4 cut(s)	298, 532, 946, 993
BtsIMutI	CAGTG	2 cut(s)	142, 365
CciI	TCATGA	1 cut(s)	691
CfoI	GCGC	2 cut(s)	42, 974
Cfr13I	GGNCC	3 cut(s)	257, 581, 703
ClaI	ATCGAT	1 cut(s)	879
Csp6I	GTAC	3 cut(s)	133, 339, 358
CviAII	CATG	4 cut(s)	329, 628, 692, 749
CviQI	GTAC	3 cut(s)	133, 339, 358
DdeI	CTNAG	4 cut(s)	585, 723, 786, 958
DpnI	GATC	4 cut(s)	185, 191, 480, 909
DpnII	GATC	4 cut(s)	183, 189, 478, 907
Eam1104I	CTCTTC	1 cut(s)	118
EarI	CTCTTC	1 cut(s)	118
Ecl136II	GAGCTC	2 cut(s)	298, 589
Eco130I	CCWWGG	1 cut(s)	637
Eco24I	GRGCYC	3 cut(s)	13, 300, 591
Eco47I	GGWCC	2 cut(s)	257, 703
Eco53kI	GAGCTC	2 cut(s)	298, 589
Eco57I	CTGAAG	1 cut(s)	852
Eco88I	CYCGRG	2 cut(s)	12, 791
EcoICRI	GAGCTC	2 cut(s)	298, 589
EcoO109I	RGGNCCY	1 cut(s)	581
EcoRI	GAATTC	1 cut(s)	524
EcoRII	CCWGG	3 cut(s)	432, 535, 699
EcoT14I	CCWWGG	1 cut(s)	637
EcoT22I	ATGCAT	2 cut(s)	447, 754
EcoT38I	GRGCYC	3 cut(s)	13, 300, 591
ErhI	CCWWGG	1 cut(s)	637
FaeI	CATG	4 cut(s)	332, 631, 695, 752
FatI	CATG	4 cut(s)	328, 627, 691, 748
FbaI	TGATCA	3 cut(s)	183, 478, 907
FblI	GTMKAC	1 cut(s)	18
Fnu4HI	GCNGC	1 cut(s)	275
FokI	GGATG	3 cut(s)	305, 519, 933
FriOI	GRGCYC	3 cut(s)	13, 300, 591
Fsp4HI	GCNGC	1 cut(s)	275
FspBI	CTAG	5 cut(s)	6, 45, 312, 710, 887
GlaI	GCGC	2 cut(s)	41, 973
GluI	GCNGC	1 cut(s)	275
GsuI	CTGGAG	1 cut(s)	828
HaeII	RGCGCY	1 cut(s)	43
HaeIII	GGCC	2 cut(s)	583, 875
HapII	CCGG	1 cut(s)	985
HhaI	GCGC	2 cut(s)	42, 974
Hin1I	GRCGYC	1 cut(s)	27
Hin1II	CATG	4 cut(s)	332, 631, 695, 752
Hin6I	GCGC	2 cut(s)	40, 972
HinP1I	GCGC	2 cut(s)	40, 972
HincII	GTYRAC	2 cut(s)	31, 334
HindII	GTYRAC	2 cut(s)	31, 334
HindIII	AAGCTT	1 cut(s)	893
HinfI	GANTC	3 cut(s)	15, 65, 244
HpaII	CCGG	1 cut(s)	985
HphI	GGTGA	1 cut(s)	154
Hpy166II	GTNNAC	3 cut(s)	19, 31, 334
Hpy188I	TCNGA	4 cut(s)	114, 557, 871, 961
Hpy188III	TCNNGA	9 cut(s)	92, 187, 205, 449, 482, 692, 845, 887, 914
Hpy8I	GTNNAC	3 cut(s)	19, 31, 334
Hpy99I	CGWCG	1 cut(s)	29
HpyAV	CCTTC	2 cut(s)	86, 109
HpyCH4III	ACNGT	3 cut(s)	137, 338, 425
HpyCH4IV	ACGT	3 cut(s)	27, 33, 468
HpyCH4V	TGCA	6 cut(s)	445, 604, 653, 752, 929, 991
HpyF10VI	GCNNNNNNNGC	1 cut(s)	935
HpyF3I	CTNAG	4 cut(s)	585, 723, 786, 958
HpySE526I	ACGT	3 cut(s)	27, 33, 468
Hsp92I	GRCGYC	1 cut(s)	27
Hsp92II	CATG	4 cut(s)	332, 631, 695, 752
HspAI	GCGC	2 cut(s)	40, 972
Ksp22I	TGATCA	3 cut(s)	183, 478, 907
Kzo9I	GATC	4 cut(s)	183, 189, 478, 907
LmnI	GCTCC	2 cut(s)	594, 633
Lsp1109I	GCAGC	1 cut(s)	261
LweI	GCATC	3 cut(s)	454, 865, 978
MaeI	CTAG	5 cut(s)	6, 45, 312, 710, 887
MaeII	ACGT	3 cut(s)	27, 33, 468
MaeIII	GTNAC	3 cut(s)	160, 744, 809
MalI	GATC	4 cut(s)	185, 191, 480, 909
MboI	GATC	4 cut(s)	183, 189, 478, 907
MboII	GAAGA	5 cut(s)	135, 136, 226, 858, 890
MflI	RGATCY	1 cut(s)	189
MhlI	GDGCHC	3 cut(s)	13, 300, 591
MluCI	AATT	3 cut(s)	524, 677, 978
MlyI	GAGTC	1 cut(s)	24
MmeI	TCCRAC	2 cut(s)	100, 784
MnlI	CCTC	9 cut(s)	97, 119, 133, 142, 248, 471, 787, 795, 865
Mph1103I	ATGCAT	2 cut(s)	447, 754
MseI	TTAA	3 cut(s)	195, 219, 317
MslI	CAYNNNNRTG	1 cut(s)	450
MspI	CCGG	1 cut(s)	985
MspR9I	CCNGG	3 cut(s)	434, 537, 701
MvaI	CCWGG	3 cut(s)	434, 537, 701
MwoI	GCNNNNNNNGC	1 cut(s)	935
NdeII	GATC	4 cut(s)	183, 189, 478, 907
NlaIII	CATG	4 cut(s)	332, 631, 695, 752
NlaIV	GGNNCC	1 cut(s)	635
NmuCI	GTSAC	2 cut(s)	160, 809
NsiI	ATGCAT	2 cut(s)	447, 754
NspI	RCATGY	3 cut(s)	332, 631, 752
PaeR7I	CTCGAG	2 cut(s)	12, 791
PagI	TCATGA	1 cut(s)	691
PasI	CCCWGGG	1 cut(s)	433
PciI	ACATGT	2 cut(s)	328, 627
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PfeI	GAWTC	2 cut(s)	65, 244
PkrI	GCNGC	1 cut(s)	276
PleI	GAGTC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	23
PscI	ACATGT	2 cut(s)	328, 627
Psp124BI	GAGCTC	2 cut(s)	300, 591
Psp1406I	AACGTT	2 cut(s)	33, 468
Psp6I	CCWGG	3 cut(s)	432, 535, 699
PspGI	CCWGG	3 cut(s)	432, 535, 699
PspN4I	GGNNCC	1 cut(s)	635
PspPI	GGNCC	3 cut(s)	257, 581, 703
PspXI	VCTCGAGB	2 cut(s)	12, 791
PsuI	RGATCY	1 cut(s)	189
RsaI	GTAC	3 cut(s)	134, 340, 359
RsaNI	GTAC	3 cut(s)	133, 339, 358
RseI	CAYNNNNRTG	1 cut(s)	450
SacI	GAGCTC	2 cut(s)	300, 591
SaqAI	TTAA	3 cut(s)	195, 219, 317
SatI	GCNGC	1 cut(s)	275
Sau3AI	GATC	4 cut(s)	183, 189, 478, 907
Sau96I	GGNCC	3 cut(s)	257, 581, 703
SchI	GAGTC	1 cut(s)	24
ScrFI	CCNGG	3 cut(s)	434, 537, 701
SduI	GDGCHC	3 cut(s)	13, 300, 591
SfaNI	GCATC	3 cut(s)	454, 865, 978
Sfr274I	CTCGAG	2 cut(s)	12, 791
SinI	GGWCC	2 cut(s)	257, 703
SlaI	CTCGAG	2 cut(s)	12, 791
SmiMI	CAYNNNNRTG	1 cut(s)	450
SmlI	CTYRAG	3 cut(s)	12, 407, 791
SmoI	CTYRAG	3 cut(s)	12, 407, 791
Sse9I	AATT	3 cut(s)	524, 677, 978
SsiI	CCGC	1 cut(s)	490
SspI	AATATT	2 cut(s)	237, 265
SspMI	CTAG	5 cut(s)	6, 45, 312, 710, 887
SstI	GAGCTC	2 cut(s)	300, 591
StyD4I	CCNGG	3 cut(s)	432, 535, 699
StyI	CCWWGG	1 cut(s)	637
TaaI	ACNGT	3 cut(s)	137, 338, 425
TaiI	ACGT	3 cut(s)	30, 36, 471
TaqI	TCGA	6 cut(s)	13, 147, 448, 792, 879, 901
TasI	AATT	3 cut(s)	524, 677, 978
TatI	WGTACW	2 cut(s)	132, 338
TfiI	GAWTC	2 cut(s)	65, 244
Tru1I	TTAA	3 cut(s)	195, 219, 317
Tru9I	TTAA	3 cut(s)	195, 219, 317
TscAI	CASTG	2 cut(s)	142, 372
TseFI	GTSAC	2 cut(s)	160, 809
TseI	GCWGC	1 cut(s)	274
Tsp45I	GTSAC	2 cut(s)	160, 809
TspDTI	ATGAA	4 cut(s)	111, 186, 414, 609
TspGWI	ACGGA	1 cut(s)	752
TspRI	CASTG	2 cut(s)	142, 372
VpaK11BI	GGWCC	2 cut(s)	257, 703
XapI	RAATTY	1 cut(s)	524
XbaI	TCTAGA	1 cut(s)	886
XceI	RCATGY	3 cut(s)	332, 631, 752
XhoI	CTCGAG	2 cut(s)	12, 791
XmiI	GTMKAC	1 cut(s)	18
XspI	CTAG	5 cut(s)	6, 45, 312, 710, 887
ZraI	GACGTC	1 cut(s)	28
Zsp2I	ATGCAT	2 cut(s)	447, 754

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.