Rh5DG320900

UDP-glycosyltransferase 72E1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0002707
Physical Location & Seq
Forward (+)
41484352 .. 41492980
8629 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG320900.1

Sequence Viewer

Length: 567 bp
ATGATAAGAAGGAAGAGAGAGTTGGCTCATGGGTTGGAGTTGAGTGGAAAACGATTCCTCTGGGTGGCGAGACCTCCCAGAGCCGATGGTGCTTCGGGAAGCTTCTTCGAAGCTGGTGTTGATGGTGCCCTTACGGCGTCGTATCTGCCGGATGGGTTTTCGGAGAGGACACGAGGGGCAGGGCTGGTGACGGCGACGTGTACGGCCGACTTGCCCTATTTTTCTTGTGTTCAAGATGAATATGAGGTTGTTCGGAAGGTTGGAAAAGGAAAGTACAGTGAGGTCTTCGAGGGTATAAATGTCACCAACAATGAAAAATGCGTGATCAAGATCCTTAGACCAGTCAAGAAAAAGTGCAAAAATGATGAGGAAATTGTAGCTGTTCTAGCTCATGAGCTAGGCCATTGGAAGCTTAATCACAGTGTATACTTCTTCATTTCTATACAGGACATGTTTGGGAAGGGTTCGAACGTACAAGGTAGCTCAGGAAATGGTAGTGTCTCTTCTCCACCATCTGGTCAACAGGTACGGGGCAGACCGAAAACGAAAACCAGGCATGGCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 map00940
Pfam Domains
Protein Families
UDPGT

Protein Analysis

188

Amino Acids

20.62

Weight (kDa)

9.51

Isoelectric Point (pI)

26.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M48 PF01435 111 - 146 8.5e-08 Peptidase family M48
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 125
AccB7I CCANNNNNTGG 1 cut(s) 515
AccI GTMKAC 1 cut(s) 426
AclWI GGATC 1 cut(s) 325
AcoI YGGCCR 1 cut(s) 204
AcyI GRCGYC 1 cut(s) 137
AfaI GTAC 4 cut(s) 202, 275, 474, 528
AfiI CCNNNNNNNGG 2 cut(s) 64, 515
AflIII ACRYGT 2 cut(s) 197, 450
AgsI TTSAA 1 cut(s) 233
AjiI CACGTC 1 cut(s) 198
AjnI CCWGG 1 cut(s) 551
AjuI GAANNNNNNNTTGG 1 cut(s) 37
AluBI AGCT 7 cut(s) 102, 113, 380, 389, 397, 412, 483
AluI AGCT 7 cut(s) 102, 113, 380, 389, 397, 412, 483
Alw26I GTCTC 2 cut(s) 64, 505
AlwI GGATC 1 cut(s) 325
AoxI GGCC 2 cut(s) 204, 400
AsuHPI GGTGA 2 cut(s) 199, 295
AsuII TTCGAA 2 cut(s) 108, 467
BaeGI GKGCMC 1 cut(s) 130
BanI GGYRCC 1 cut(s) 125
BarI GAAGNNNNNNTAC 2 cut(s) 487, 519
BauI CACGAG 1 cut(s) 171
BbsI GAAGAC 1 cut(s) 277
BccI CCATC 4 cut(s) 80, 116, 146, 520
BceAI ACGGC 3 cut(s) 150, 207, 219
BciT130I CCWGG 1 cut(s) 553
BclI TGATCA 1 cut(s) 324
BcoDI GTCTC 2 cut(s) 64, 505
BfaI CTAG 2 cut(s) 386, 398
BglI GCCNNNNNGGC 1 cut(s) 134
Bme1390I CCNGG 1 cut(s) 553
BmgBI CACGTC 1 cut(s) 198
BmiI GGNNCC 1 cut(s) 127
BmrFI CCNGG 1 cut(s) 553
BpiI GAAGAC 1 cut(s) 277
Bpu10I CCTNAGC 1 cut(s) 484
Bpu14I TTCGAA 2 cut(s) 108, 467
BsaBI GATNNNNATC 1 cut(s) 329
BsaHI GRCGYC 1 cut(s) 137
BsaI GGTCTC 1 cut(s) 64
Bsc4I CCNNNNNNNGG 2 cut(s) 64, 515
Bse1I ACTGG 1 cut(s) 341
Bse8I GATNNNNATC 1 cut(s) 329
BseBI CCWGG 1 cut(s) 553
BseGI GGATG 1 cut(s) 157
BseJI GATNNNNATC 1 cut(s) 329
BseLI CCNNNNNNNGG 2 cut(s) 64, 515
BseMII CTCAG 1 cut(s) 498
BseNI ACTGG 1 cut(s) 341
BseSI GKGCMC 1 cut(s) 130
BseX3I CGGCCG 1 cut(s) 204
Bsh1285I CGRYCG 1 cut(s) 207
BshFI GGCC 2 cut(s) 206, 402
BshNI GGYRCC 1 cut(s) 125
BsiEI CGRYCG 1 cut(s) 207
BsiSI CCGG 1 cut(s) 149
BslI CCNNNNNNNGG 2 cut(s) 64, 515
BsmAI GTCTC 2 cut(s) 64, 505
BsnI GGCC 2 cut(s) 206, 402
Bso31I GGTCTC 1 cut(s) 64
Bsp119I TTCGAA 2 cut(s) 108, 467
Bsp1286I GDGCHC 1 cut(s) 130
Bsp143I GATC 2 cut(s) 324, 330
BspANI GGCC 2 cut(s) 206, 402
BspCNI CTCAG 1 cut(s) 497
BspHI TCATGA 1 cut(s) 391
BspLI GGNNCC 1 cut(s) 127
BspPI GGATC 1 cut(s) 325
BspT104I TTCGAA 2 cut(s) 108, 467
BspT107I GGYRCC 1 cut(s) 125
BspTNI GGTCTC 1 cut(s) 64
BsrI ACTGG 1 cut(s) 341
BssMI GATC 2 cut(s) 324, 330
BssNAI GTATAC 1 cut(s) 427
BssNI GRCGYC 1 cut(s) 137
BssSI CACGAG 1 cut(s) 171
Bst1107I GTATAC 1 cut(s) 427
Bst2BI CACGAG 1 cut(s) 171
Bst2UI CCWGG 1 cut(s) 553
Bst4CI ACNGT 2 cut(s) 278, 422
Bst6I CTCTTC 2 cut(s) 8, 508
BstACI GRCGYC 1 cut(s) 137
BstBI TTCGAA 2 cut(s) 108, 467
BstDEI CTNAG 2 cut(s) 335, 484
BstF5I GGATG 1 cut(s) 157
BstKTI GATC 2 cut(s) 327, 333
BstMAI GTCTC 2 cut(s) 64, 505
BstMBI GATC 2 cut(s) 324, 330
BstMCI CGRYCG 1 cut(s) 207
BstMWI GCNNNNNNNGC 3 cut(s) 89, 134, 386
BstNI CCWGG 1 cut(s) 553
BstNSI RCATGY 1 cut(s) 454
BstSCI CCNGG 1 cut(s) 551
BstSLI GKGCMC 1 cut(s) 130
BstV2I GAAGAC 1 cut(s) 277
BstX2I RGATCY 1 cut(s) 330
BstYI RGATCY 1 cut(s) 330
BstZ17I GTATAC 1 cut(s) 427
BstZI CGGCCG 1 cut(s) 204
BsuRI GGCC 2 cut(s) 206, 402
BtrI CACGTC 1 cut(s) 198
BtsCI GGATG 1 cut(s) 157
BtsIMutI CAGTG 2 cut(s) 283, 427
CciI TCATGA 1 cut(s) 391
CseI GACGC 1 cut(s) 126
Csp6I GTAC 4 cut(s) 201, 274, 473, 527
CviAII CATG 4 cut(s) 29, 392, 451, 557
CviQI GTAC 4 cut(s) 201, 274, 473, 527
DdeI CTNAG 2 cut(s) 335, 484
DpnI GATC 2 cut(s) 326, 332
DpnII GATC 2 cut(s) 324, 330
EaeI YGGCCR 1 cut(s) 204
EagI CGGCCG 1 cut(s) 204
Eam1104I CTCTTC 2 cut(s) 8, 508
EarI CTCTTC 2 cut(s) 8, 508
EclXI CGGCCG 1 cut(s) 204
Eco31I GGTCTC 1 cut(s) 64
Eco52I CGGCCG 1 cut(s) 204
EcoRII CCWGG 1 cut(s) 551
FaeI CATG 4 cut(s) 32, 395, 454, 560
FaiI YATR 8 cut(s) 30, 243, 296, 393, 427, 443, 452, 558
FatI CATG 4 cut(s) 28, 391, 450, 556
FbaI TGATCA 1 cut(s) 324
FblI GTMKAC 1 cut(s) 426
FokI GGATG 1 cut(s) 164
FspBI CTAG 2 cut(s) 386, 398
HaeIII GGCC 2 cut(s) 206, 402
HapII CCGG 1 cut(s) 149
HgaI GACGC 1 cut(s) 126
Hin1I GRCGYC 1 cut(s) 137
Hin1II CATG 4 cut(s) 32, 395, 454, 560
HincII GTYRAC 1 cut(s) 521
HindII GTYRAC 1 cut(s) 521
HindIII AAGCTT 2 cut(s) 100, 410
HinfI GANTC 1 cut(s) 54
HpaII CCGG 1 cut(s) 149
HphI GGTGA 2 cut(s) 199, 295
Hpy166II GTNNAC 3 cut(s) 201, 427, 521
Hpy188I TCNGA 2 cut(s) 163, 255
Hpy188III TCNNGA 6 cut(s) 96, 233, 328, 346, 392, 486
Hpy8I GTNNAC 3 cut(s) 201, 427, 521
Hpy99I CGWCG 2 cut(s) 142, 199
HpyAV CCTTC 3 cut(s) 3, 250, 454
HpyCH4III ACNGT 2 cut(s) 278, 422
HpyCH4IV ACGT 2 cut(s) 197, 471
HpyCH4V TGCA 1 cut(s) 357
HpyF10VI GCNNNNNNNGC 3 cut(s) 89, 134, 386
HpyF3I CTNAG 2 cut(s) 335, 484
HpySE526I ACGT 2 cut(s) 197, 471
Hsp92I GRCGYC 1 cut(s) 137
Hsp92II CATG 4 cut(s) 32, 395, 454, 560
Ksp22I TGATCA 1 cut(s) 324
Kzo9I GATC 2 cut(s) 324, 330
MaeI CTAG 2 cut(s) 386, 398
MaeII ACGT 2 cut(s) 197, 471
MaeIII GTNAC 2 cut(s) 187, 301
MalI GATC 2 cut(s) 326, 332
MboI GATC 2 cut(s) 324, 330
MboII GAAGA 5 cut(s) 25, 97, 277, 424, 495
MflI RGATCY 1 cut(s) 330
MhlI GDGCHC 1 cut(s) 130
MluCI AATT 2 cut(s) 372, 562
MmeI TCCRAC 2 cut(s) 15, 241
MnlI CCTC 8 cut(s) 68, 84, 159, 167, 238, 274, 283, 361
MseI TTAA 2 cut(s) 414, 565
MspI CCGG 1 cut(s) 149
MspR9I CCNGG 1 cut(s) 553
MvaI CCWGG 1 cut(s) 553
MwoI GCNNNNNNNGC 3 cut(s) 89, 134, 386
NdeII GATC 2 cut(s) 324, 330
NlaIII CATG 4 cut(s) 32, 395, 454, 560
NlaIV GGNNCC 1 cut(s) 127
NmuCI GTSAC 2 cut(s) 187, 301
NspI RCATGY 1 cut(s) 454
NspV TTCGAA 2 cut(s) 108, 467
PagI TCATGA 1 cut(s) 391
PciI ACATGT 1 cut(s) 450
PfeI GAWTC 1 cut(s) 54
PflMI CCANNNNNTGG 1 cut(s) 515
PscI ACATGT 1 cut(s) 450
Psp6I CCWGG 1 cut(s) 551
PspGI CCWGG 1 cut(s) 551
PspN4I GGNNCC 1 cut(s) 127
PsuI RGATCY 1 cut(s) 330
RsaI GTAC 4 cut(s) 202, 275, 474, 528
RsaNI GTAC 4 cut(s) 201, 274, 473, 527
SaqAI TTAA 2 cut(s) 414, 565
Sau3AI GATC 2 cut(s) 324, 330
ScrFI CCNGG 1 cut(s) 553
SduI GDGCHC 1 cut(s) 130
SfuI TTCGAA 2 cut(s) 108, 467
Sse9I AATT 2 cut(s) 372, 562
SspMI CTAG 2 cut(s) 386, 398
StyD4I CCNGG 1 cut(s) 551
TaaI ACNGT 2 cut(s) 278, 422
TaiI ACGT 2 cut(s) 200, 474
TaqI TCGA 3 cut(s) 108, 288, 467
TaqII GACCGA 1 cut(s) 553
TasI AATT 2 cut(s) 372, 562
TatI WGTACW 1 cut(s) 273
TfiI GAWTC 1 cut(s) 54
Tru1I TTAA 2 cut(s) 414, 565
Tru9I TTAA 2 cut(s) 414, 565
TscAI CASTG 2 cut(s) 283, 427
TseFI GTSAC 2 cut(s) 187, 301
Tsp45I GTSAC 2 cut(s) 187, 301
TspDTI ATGAA 3 cut(s) 252, 327, 424
TspRI CASTG 2 cut(s) 283, 427
Van91I CCANNNNNTGG 1 cut(s) 515
XceI RCATGY 1 cut(s) 454
XmiI GTMKAC 1 cut(s) 426
XspI CTAG 2 cut(s) 386, 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.