Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002707

Physical Location & Seq

Genomic Coordinates Reverse (-)

51792397 .. 51792714

Gene Structure 318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0371000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGAATAGATCAGGCTACCTCCCCAATACCCACTTTGTATTGCAAGATGTGGAAGAACAAGAGAAGGAGCAGATTTTGTGTGGACACAGTGAGAAATTGGCAGTAGTGTTGGGGCTTCTGAACACTCCTCCAGGGTCTTCCCTTAGGGTAATTAAGAACCTCAGGATCTGTGGTGATTGTCATTCTGTTATCAAATTCATATCCAGCTTGGAAGGGAGAGAGATTTCAGTCAGAGATACACCAATCCCTTTCATCATTTTAAAGATGGAGTTTGTTCTTGTGGGGATTACTAGTGAAATTAACAGCCTAGCGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0031974 GO:0031981 GO:0042752 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0065007 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169

Pfam Domains

Protein Families

Pkinase

Protein Analysis

105

Amino Acids

11.66

Weight (kDa)

5.56

Isoelectric Point (pI)

46.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DYW_deaminase	PF14432	5 - 80	7.3e-32	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002707)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33300 FvH4_2g33300 FvH4_2g33300 FvH4_2g33300 FvH4_2g33300
malus_domestica	MD08G1087400.v1.1 MD15G1072400.v1.1 MD15G1314700.v1.1
prunus_persica	Prupe.1G425000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0357221 RchiOBHm_Chr1g0362391 RchiOBHm_Chr2g0131551 RchiOBHm_Chr6g0309321
rosa_laevigata	RLG00000009840 RLG00000010574 RLG00000021364 RLG00000031506
rosa_multiflora	Rmu_sc0003576.1_g000007 Rmu_sc0015692.1_g000002
rosa_roxburghii	Rroxscaffold_3G00228160 Rroxscaffold_6G00412270 Rroxscaffold_7G00159490
rosa_rugosa	Rorug01G0255000 Rorug05G0444500 Rorug05G0444500 Rorug06G0371000
rosa_samantha	Rh2BG357900 Rh5AG062100 Rh5AG134700 Rh5BG310400 Rh5DG320900 Rh6AG235600 Rh6AG484400 Rh6BG493500 Rh6CG498300 Rh6DG484800
rosa_wichuraiana	Rw6G028820 Rw6G042170 Rw7G020100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	311
AclWI	GGATC	1 cut(s)	173
AcsI	RAATTY	1 cut(s)	194
AhlI	ACTAGT	1 cut(s)	290
AjnI	CCWGG	1 cut(s)	130
AluBI	AGCT	1 cut(s)	207
AluI	AGCT	1 cut(s)	207
AlwI	GGATC	1 cut(s)	173
AlwNI	CAGNNNCTG	1 cut(s)	168
ApoI	RAATTY	1 cut(s)	194
AsuHPI	GGTGA	1 cut(s)	185
AxyI	CCTNAGG	2 cut(s)	143, 161
BbsI	GAAGAC	1 cut(s)	129
BccI	CCATC	1 cut(s)	259
BciT130I	CCWGG	1 cut(s)	132
BcuI	ACTAGT	1 cut(s)	290
BfaI	CTAG	2 cut(s)	291, 308
Bme1390I	CCNGG	1 cut(s)	132
BmrFI	CCNGG	1 cut(s)	132
BpiI	GAAGAC	1 cut(s)	129
BpmI	CTGGAG	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	131
Bse21I	CCTNAGG	2 cut(s)	143, 161
BseBI	CCWGG	1 cut(s)	132
BseDI	CCNNGG	1 cut(s)	131
BseMII	CTCAG	1 cut(s)	175
BseRI	GAGGAG	1 cut(s)	117
Bsp143I	GATC	2 cut(s)	8, 165
BspACI	CCGC	1 cut(s)	311
BspCNI	CTCAG	1 cut(s)	174
BspPI	GGATC	1 cut(s)	173
BssECI	CCNNGG	1 cut(s)	131
BssMI	GATC	2 cut(s)	8, 165
Bst2UI	CCWGG	1 cut(s)	132
Bst4CI	ACNGT	1 cut(s)	89
BstDEI	CTNAG	2 cut(s)	143, 161
BstKTI	GATC	2 cut(s)	11, 168
BstMBI	GATC	2 cut(s)	8, 165
BstNI	CCWGG	1 cut(s)	132
BstSCI	CCNGG	1 cut(s)	130
BstV2I	GAAGAC	1 cut(s)	129
BstX2I	RGATCY	1 cut(s)	165
BstYI	RGATCY	1 cut(s)	165
Bsu36I	CCTNAGG	2 cut(s)	143, 161
BtsIMutI	CAGTG	1 cut(s)	94
CaiI	CAGNNNCTG	1 cut(s)	168
CviJI	RGCY	4 cut(s)	15, 115, 207, 306
CviKI_1	RGCY	4 cut(s)	15, 115, 207, 306
DdeI	CTNAG	2 cut(s)	143, 161
DpnI	GATC	2 cut(s)	10, 167
DpnII	GATC	2 cut(s)	8, 165
DraI	TTTAAA	1 cut(s)	261
Eco81I	CCTNAGG	2 cut(s)	143, 161
EcoRII	CCWGG	1 cut(s)	130
FaiI	YATR	1 cut(s)	200
FspBI	CTAG	2 cut(s)	291, 308
GsuI	CTGGAG	1 cut(s)	114
HphI	GGTGA	1 cut(s)	185
Hpy166II	GTNNAC	1 cut(s)	83
Hpy188I	TCNGA	2 cut(s)	120, 233
Hpy188III	TCNNGA	1 cut(s)	163
Hpy8I	GTNNAC	1 cut(s)	83
HpyAV	CCTTC	2 cut(s)	58, 206
HpyCH4III	ACNGT	1 cut(s)	89
HpyCH4V	TGCA	1 cut(s)	43
HpyF3I	CTNAG	2 cut(s)	143, 161
Kzo9I	GATC	2 cut(s)	8, 165
LmnI	GCTCC	1 cut(s)	67
LpnPI	CCDG	4 cut(s)	117, 144, 148, 217
MaeI	CTAG	2 cut(s)	291, 308
MalI	GATC	2 cut(s)	10, 167
MboI	GATC	2 cut(s)	8, 165
MboII	GAAGA	2 cut(s)	65, 129
MflI	RGATCY	1 cut(s)	165
MluCI	AATT	4 cut(s)	95, 150, 194, 297
MnlI	CCTC	3 cut(s)	29, 138, 170
MseI	TTAA	3 cut(s)	153, 260, 300
MspR9I	CCNGG	1 cut(s)	132
MvaI	CCWGG	1 cut(s)	132
NdeII	GATC	2 cut(s)	8, 165
Psp6I	CCWGG	1 cut(s)	130
PspGI	CCWGG	1 cut(s)	130
PstNI	CAGNNNCTG	1 cut(s)	168
PsuI	RGATCY	1 cut(s)	165
SaqAI	TTAA	3 cut(s)	153, 260, 300
Sau3AI	GATC	2 cut(s)	8, 165
ScrFI	CCNGG	1 cut(s)	132
SetI	ASST	3 cut(s)	21, 162, 209
SpeI	ACTAGT	1 cut(s)	290
Sse9I	AATT	4 cut(s)	95, 150, 194, 297
SsiI	CCGC	1 cut(s)	311
SspMI	CTAG	2 cut(s)	291, 308
StyD4I	CCNGG	1 cut(s)	130
TaaI	ACNGT	1 cut(s)	89
TasI	AATT	4 cut(s)	95, 150, 194, 297
Tru1I	TTAA	3 cut(s)	153, 260, 300
Tru9I	TTAA	3 cut(s)	153, 260, 300
TscAI	CASTG	1 cut(s)	94
TspDTI	ATGAA	3 cut(s)	17, 187, 241
TspRI	CASTG	1 cut(s)	94
XapI	RAATTY	1 cut(s)	194
XspI	CTAG	2 cut(s)	291, 308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.