Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002707

Physical Location & Seq

Genomic Coordinates Forward (+)

58765576 .. 58766781

Gene Structure 1206 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009840

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGTGTACGGCTGCTCAATTGACAGAATTCTCAATTATGTTTAACGATCTGAAAACCTCCAATCAGAATTGGCTCGTGGGTTGGAGCTGCGTGGCAAAACGATTCCTCTGGGTGGCGAGATCTCCCAGAGCCGATGGTGCTTCGGGAAGATTCTTCGAAGCTAGTGTTGATGGTGCCCTTACGGCGTCGTATCTACTGGATGGGTTTTCGGAGAGGACACGAGGGGCAGGGCTGGTGACGGCGACGTGTACGGCCGACTTGCCCTATTTTACTTGGGGTGATGTTGTTCAAGTTGACACTTGGGTTAGTGCCCCAGGGAAGAATGTGTGTGGACTGACTAGGAGATTATCGAAAATACCTGATGAGGTTCGGAGTGAAATAGAGCCTTACTTTATGAATTCTGCTCCTGTTGTGGAGGAGGATGGCAAGAAACTGCAGAAACTGACGACAATATTGCGGGCTTTGTCCGTACTGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000036 GO:0003674 GO:0003824 GO:0004312 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016297 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0016790 GO:0019752 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0044620 GO:0046394 GO:0048037 GO:0051192 GO:0071704 GO:0072330 GO:0140104 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko01100 ko01212 map00061 map01100 map01212

Pfam Domains

Protein Families

Acyl-ACP_TE Acyl-thio_N

Protein Analysis

160

Amino Acids

17.51

Weight (kDa)

6.28

Isoelectric Point (pI)

37.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002707)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33300 FvH4_2g33300 FvH4_2g33300 FvH4_2g33300 FvH4_2g33300
malus_domestica	MD08G1087400.v1.1 MD15G1072400.v1.1 MD15G1314700.v1.1
prunus_persica	Prupe.1G425000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0357221 RchiOBHm_Chr1g0362391 RchiOBHm_Chr2g0131551 RchiOBHm_Chr6g0309321
rosa_laevigata	RLG00000009840 RLG00000010574 RLG00000021364 RLG00000031506
rosa_multiflora	Rmu_sc0003576.1_g000007 Rmu_sc0015692.1_g000002
rosa_roxburghii	Rroxscaffold_3G00228160 Rroxscaffold_6G00412270 Rroxscaffold_7G00159490
rosa_rugosa	Rorug01G0255000 Rorug05G0444500 Rorug05G0444500 Rorug06G0371000
rosa_samantha	Rh2BG357900 Rh5AG062100 Rh5AG134700 Rh5BG310400 Rh5DG320900 Rh6AG235600 Rh6AG484400 Rh6BG493500 Rh6CG498300 Rh6DG484800
rosa_wichuraiana	Rw6G028820 Rw6G042170 Rw7G020100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	173
AciI	CCGC	1 cut(s)	457
AcoI	YGGCCR	1 cut(s)	252
AcsI	RAATTY	2 cut(s)	26, 397
AcyI	GRCGYC	1 cut(s)	185
AfaI	GTAC	3 cut(s)	7, 250, 471
AfiI	CCNNNNNNNGG	1 cut(s)	112
AflIII	ACRYGT	1 cut(s)	245
AgsI	TTSAA	1 cut(s)	290
AjiI	CACGTC	1 cut(s)	246
AjnI	CCWGG	1 cut(s)	313
AluBI	AGCT	2 cut(s)	87, 161
AluI	AGCT	2 cut(s)	87, 161
AlwNI	CAGNNNCTG	1 cut(s)	442
AoxI	GGCC	1 cut(s)	252
ApeKI	GCWGC	2 cut(s)	11, 87
ApoI	RAATTY	2 cut(s)	26, 397
AsuHPI	GGTGA	2 cut(s)	247, 290
AsuII	TTCGAA	1 cut(s)	156
BaeGI	GKGCMC	2 cut(s)	178, 313
BanI	GGYRCC	1 cut(s)	173
BauI	CACGAG	2 cut(s)	74, 219
BbvI	GCAGC	1 cut(s)	74
BccI	CCATC	4 cut(s)	128, 164, 194, 416
BceAI	ACGGC	4 cut(s)	24, 198, 255, 267
BcgI	CGANNNNNNTGC	2 cut(s)	436, 470
BciT130I	CCWGG	1 cut(s)	315
BfaI	CTAG	2 cut(s)	162, 339
BfmI	CTRYAG	1 cut(s)	434
BglI	GCCNNNNNGGC	1 cut(s)	182
BglII	AGATCT	1 cut(s)	119
BisI	GCNGC	2 cut(s)	12, 88
BlsI	GCNGC	2 cut(s)	13, 89
Bme1390I	CCNGG	1 cut(s)	315
BmgBI	CACGTC	1 cut(s)	246
BmiI	GGNNCC	1 cut(s)	175
BmrFI	CCNGG	1 cut(s)	315
Bpu14I	TTCGAA	1 cut(s)	156
BsaHI	GRCGYC	1 cut(s)	185
BsaJI	CCNNGG	2 cut(s)	313, 314
Bsc4I	CCNNNNNNNGG	1 cut(s)	112
Bse1I	ACTGG	2 cut(s)	201, 477
BseBI	CCWGG	1 cut(s)	315
BseDI	CCNNGG	2 cut(s)	313, 314
BseGI	GGATG	2 cut(s)	205, 427
BseLI	CCNNNNNNNGG	1 cut(s)	112
BseNI	ACTGG	2 cut(s)	201, 477
BseRI	GAGGAG	1 cut(s)	431
BseSI	GKGCMC	2 cut(s)	178, 313
BseX3I	CGGCCG	1 cut(s)	252
BseXI	GCAGC	1 cut(s)	74
Bsh1285I	CGRYCG	1 cut(s)	255
BshFI	GGCC	1 cut(s)	254
BshNI	GGYRCC	1 cut(s)	173
BsiEI	CGRYCG	1 cut(s)	255
BslI	CCNNNNNNNGG	1 cut(s)	112
BsnI	GGCC	1 cut(s)	254
Bsp119I	TTCGAA	1 cut(s)	156
Bsp1286I	GDGCHC	2 cut(s)	178, 313
Bsp143I	GATC	2 cut(s)	46, 119
BspACI	CCGC	1 cut(s)	457
BspANI	GGCC	1 cut(s)	254
BspLI	GGNNCC	1 cut(s)	175
BspMAI	CTGCAG	1 cut(s)	438
BspT104I	TTCGAA	1 cut(s)	156
BspT107I	GGYRCC	1 cut(s)	173
BsrI	ACTGG	2 cut(s)	201, 477
BssECI	CCNNGG	2 cut(s)	313, 314
BssMI	GATC	2 cut(s)	46, 119
BssNI	GRCGYC	1 cut(s)	185
BssSI	CACGAG	2 cut(s)	74, 219
Bst2BI	CACGAG	2 cut(s)	74, 219
Bst2UI	CCWGG	1 cut(s)	315
BstACI	GRCGYC	1 cut(s)	185
BstBI	TTCGAA	1 cut(s)	156
BstC8I	GCNNGC	1 cut(s)	459
BstF5I	GGATG	2 cut(s)	205, 427
BstKTI	GATC	2 cut(s)	49, 122
BstMBI	GATC	2 cut(s)	46, 119
BstMCI	CGRYCG	1 cut(s)	255
BstMWI	GCNNNNNNNGC	2 cut(s)	137, 182
BstNI	CCWGG	1 cut(s)	315
BstSCI	CCNGG	1 cut(s)	313
BstSFI	CTRYAG	1 cut(s)	434
BstSLI	GKGCMC	2 cut(s)	178, 313
BstV1I	GCAGC	1 cut(s)	74
BstX2I	RGATCY	1 cut(s)	119
BstYI	RGATCY	1 cut(s)	119
BstZI	CGGCCG	1 cut(s)	252
BsuRI	GGCC	1 cut(s)	254
BtrI	CACGTC	1 cut(s)	246
BtsCI	GGATG	2 cut(s)	205, 427
Cac8I	GCNNGC	1 cut(s)	459
CaiI	CAGNNNCTG	1 cut(s)	442
CseI	GACGC	1 cut(s)	174
Csp6I	GTAC	3 cut(s)	6, 249, 470
CviJI	RGCY	9 cut(s)	11, 73, 87, 131, 161, 232, 254, 385, 461
CviKI_1	RGCY	9 cut(s)	11, 73, 87, 131, 161, 232, 254, 385, 461
CviQI	GTAC	3 cut(s)	6, 249, 470
DpnI	GATC	2 cut(s)	48, 121
DpnII	GATC	2 cut(s)	46, 119
EaeI	YGGCCR	1 cut(s)	252
EagI	CGGCCG	1 cut(s)	252
EclXI	CGGCCG	1 cut(s)	252
Eco52I	CGGCCG	1 cut(s)	252
EcoRI	GAATTC	2 cut(s)	26, 397
EcoRII	CCWGG	1 cut(s)	313
FaiI	YATR	2 cut(s)	38, 395
FauI	CCCGC	1 cut(s)	450
Fnu4HI	GCNGC	2 cut(s)	12, 88
FokI	GGATG	2 cut(s)	212, 434
Fsp4HI	GCNGC	2 cut(s)	12, 88
FspBI	CTAG	2 cut(s)	162, 339
GluI	GCNGC	2 cut(s)	12, 88
HaeIII	GGCC	1 cut(s)	254
HgaI	GACGC	1 cut(s)	174
Hin1I	GRCGYC	1 cut(s)	185
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HinfI	GANTC	2 cut(s)	102, 150
HphI	GGTGA	2 cut(s)	247, 290
Hpy166II	GTNNAC	4 cut(s)	6, 249, 295, 332
Hpy188I	TCNGA	4 cut(s)	51, 66, 211, 372
Hpy188III	TCNNGA	1 cut(s)	144
Hpy8I	GTNNAC	4 cut(s)	6, 249, 295, 332
Hpy99I	CGWCG	2 cut(s)	190, 247
HpyCH4IV	ACGT	1 cut(s)	245
HpyCH4V	TGCA	1 cut(s)	436
HpyF10VI	GCNNNNNNNGC	2 cut(s)	137, 182
HpySE526I	ACGT	1 cut(s)	245
Hsp92I	GRCGYC	1 cut(s)	185
Kzo9I	GATC	2 cut(s)	46, 119
LmnI	GCTCC	2 cut(s)	84, 409
Lsp1109I	GCAGC	1 cut(s)	74
MaeI	CTAG	2 cut(s)	162, 339
MaeII	ACGT	1 cut(s)	245
MaeIII	GTNAC	1 cut(s)	235
MalI	GATC	2 cut(s)	48, 121
MboI	GATC	2 cut(s)	46, 119
MboII	GAAGA	3 cut(s)	145, 159, 331
MfeI	CAATTG	1 cut(s)	17
MflI	RGATCY	1 cut(s)	119
MhlI	GDGCHC	2 cut(s)	178, 313
MluCI	AATT	5 cut(s)	17, 26, 33, 67, 397
MmeI	TCCRAC	1 cut(s)	62
MnlI	CCTC	7 cut(s)	67, 116, 207, 215, 358, 409, 412
MseI	TTAA	2 cut(s)	42, 478
MspR9I	CCNGG	1 cut(s)	315
MunI	CAATTG	1 cut(s)	17
MvaI	CCWGG	1 cut(s)	315
MwoI	GCNNNNNNNGC	2 cut(s)	137, 182
NdeII	GATC	2 cut(s)	46, 119
NlaIV	GGNNCC	1 cut(s)	175
NmuCI	GTSAC	1 cut(s)	235
NspV	TTCGAA	1 cut(s)	156
PasI	CCCWGGG	1 cut(s)	314
PfeI	GAWTC	2 cut(s)	102, 150
PkrI	GCNGC	2 cut(s)	13, 89
Psp6I	CCWGG	1 cut(s)	313
PspGI	CCWGG	1 cut(s)	313
PspN4I	GGNNCC	1 cut(s)	175
PstI	CTGCAG	1 cut(s)	438
PstNI	CAGNNNCTG	1 cut(s)	442
PsuI	RGATCY	1 cut(s)	119
RsaI	GTAC	3 cut(s)	7, 250, 471
RsaNI	GTAC	3 cut(s)	6, 249, 470
SaqAI	TTAA	2 cut(s)	42, 478
SatI	GCNGC	2 cut(s)	12, 88
Sau3AI	GATC	2 cut(s)	46, 119
ScrFI	CCNGG	1 cut(s)	315
SduI	GDGCHC	2 cut(s)	178, 313
SetI	ASST	6 cut(s)	59, 89, 163, 248, 361, 369
SfcI	CTRYAG	1 cut(s)	434
SfuI	TTCGAA	1 cut(s)	156
Sse9I	AATT	5 cut(s)	17, 26, 33, 67, 397
SsiI	CCGC	1 cut(s)	457
SspI	AATATT	1 cut(s)	453
SspMI	CTAG	2 cut(s)	162, 339
StyD4I	CCNGG	1 cut(s)	313
TaiI	ACGT	1 cut(s)	248
TaqI	TCGA	2 cut(s)	156, 350
TasI	AATT	5 cut(s)	17, 26, 33, 67, 397
TfiI	GAWTC	2 cut(s)	102, 150
Tru1I	TTAA	2 cut(s)	42, 478
Tru9I	TTAA	2 cut(s)	42, 478
TseFI	GTSAC	1 cut(s)	235
TseI	GCWGC	2 cut(s)	11, 87
Tsp45I	GTSAC	1 cut(s)	235
TspDTI	ATGAA	1 cut(s)	410
TspGWI	ACGGA	1 cut(s)	457
XapI	RAATTY	2 cut(s)	26, 397
XspI	CTAG	2 cut(s)	162, 339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.