Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002707

Physical Location & Seq

Genomic Coordinates Forward (+)

34886111 .. 34886589

Gene Structure 479 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00412270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGGTAGTTATGTGTGTAAATGAGTGCTTGCAGTGCAAAAATGATGAGGAAATTTTAGCTGTTCTAGCTCATGAGCTAGGCCATTGGAAGCTTAATCACAGTGGAAGCACCTTAAGTGGCTCAACATCAACAAATACAGATGACAGATCTTACGTTTACAATCCAATGAAAAAAGGGATAAGGGAAGTTTGGCAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016021 GO:0016485 GO:0016787 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0070011 GO:0071586 GO:0071704 GO:0080120 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Peptidase_M48 Peptidase_M48_N

Protein Analysis

66

Amino Acids

7.48

Weight (kDa)

5.45

Isoelectric Point (pI)

29.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M48	PF01435	11 - 40	2.7e-08	Peptidase family M48

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002707)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33300 FvH4_2g33300 FvH4_2g33300 FvH4_2g33300 FvH4_2g33300
malus_domestica	MD08G1087400.v1.1 MD15G1072400.v1.1 MD15G1314700.v1.1
prunus_persica	Prupe.1G425000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0357221 RchiOBHm_Chr1g0362391 RchiOBHm_Chr2g0131551 RchiOBHm_Chr6g0309321
rosa_laevigata	RLG00000009840 RLG00000010574 RLG00000021364 RLG00000031506
rosa_multiflora	Rmu_sc0003576.1_g000007 Rmu_sc0015692.1_g000002
rosa_roxburghii	Rroxscaffold_3G00228160 Rroxscaffold_6G00412270 Rroxscaffold_7G00159490
rosa_rugosa	Rorug01G0255000 Rorug05G0444500 Rorug05G0444500 Rorug06G0371000
rosa_samantha	Rh2BG357900 Rh5AG062100 Rh5AG134700 Rh5BG310400 Rh5DG320900 Rh6AG235600 Rh6AG484400 Rh6BG493500 Rh6CG498300 Rh6DG484800
rosa_wichuraiana	Rw6G028820 Rw6G042170 Rw7G020100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	51
AflII	CTTAAG	1 cut(s)	112
AluBI	AGCT	4 cut(s)	59, 68, 76, 91
AluI	AGCT	4 cut(s)	59, 68, 76, 91
AoxI	GGCC	1 cut(s)	79
ApoI	RAATTY	1 cut(s)	51
BfaI	CTAG	2 cut(s)	65, 77
BfrI	CTTAAG	1 cut(s)	112
BglII	AGATCT	1 cut(s)	146
BshFI	GGCC	1 cut(s)	81
BsnI	GGCC	1 cut(s)	81
Bsp143I	GATC	1 cut(s)	146
BspANI	GGCC	1 cut(s)	81
BspHI	TCATGA	1 cut(s)	70
BspTI	CTTAAG	1 cut(s)	112
BssMI	GATC	1 cut(s)	146
Bst4CI	ACNGT	1 cut(s)	101
BstAFI	CTTAAG	1 cut(s)	112
BstC8I	GCNNGC	1 cut(s)	29
BstKTI	GATC	1 cut(s)	149
BstMBI	GATC	1 cut(s)	146
BstMWI	GCNNNNNNNGC	2 cut(s)	33, 65
BstX2I	RGATCY	1 cut(s)	146
BstYI	RGATCY	1 cut(s)	146
BsuRI	GGCC	1 cut(s)	81
BtsI	GCAGTG	1 cut(s)	38
BtsIMutI	CAGTG	2 cut(s)	38, 106
Cac8I	GCNNGC	1 cut(s)	29
CciI	TCATGA	1 cut(s)	70
CviAII	CATG	1 cut(s)	71
CviJI	RGCY	6 cut(s)	59, 68, 76, 81, 91, 120
CviKI_1	RGCY	6 cut(s)	59, 68, 76, 81, 91, 120
DpnI	GATC	1 cut(s)	148
DpnII	GATC	1 cut(s)	146
FaeI	CATG	1 cut(s)	74
FaiI	YATR	2 cut(s)	11, 72
FatI	CATG	1 cut(s)	70
FspBI	CTAG	2 cut(s)	65, 77
HaeIII	GGCC	1 cut(s)	81
Hin1II	CATG	1 cut(s)	74
HindIII	AAGCTT	1 cut(s)	89
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188III	TCNNGA	1 cut(s)	71
Hpy8I	GTNNAC	1 cut(s)	157
HpyCH4III	ACNGT	1 cut(s)	101
HpyCH4IV	ACGT	1 cut(s)	153
HpyCH4V	TGCA	2 cut(s)	31, 36
HpyF10VI	GCNNNNNNNGC	2 cut(s)	33, 65
HpySE526I	ACGT	1 cut(s)	153
Hsp92II	CATG	1 cut(s)	74
Kzo9I	GATC	1 cut(s)	146
LpnPI	CCDG	1 cut(s)	179
MaeI	CTAG	2 cut(s)	65, 77
MaeII	ACGT	1 cut(s)	153
MalI	GATC	1 cut(s)	148
MboI	GATC	1 cut(s)	146
MflI	RGATCY	1 cut(s)	146
MluCI	AATT	1 cut(s)	51
MnlI	CCTC	1 cut(s)	40
MseI	TTAA	2 cut(s)	93, 113
MspCI	CTTAAG	1 cut(s)	112
MwoI	GCNNNNNNNGC	2 cut(s)	33, 65
NdeII	GATC	1 cut(s)	146
NlaIII	CATG	1 cut(s)	74
PagI	TCATGA	1 cut(s)	70
PsuI	RGATCY	1 cut(s)	146
SaqAI	TTAA	2 cut(s)	93, 113
Sau3AI	GATC	1 cut(s)	146
SetI	ASST	6 cut(s)	61, 70, 78, 93, 113, 156
SgeI	CNNG	4 cut(s)	40, 77, 83, 89
SmlI	CTYRAG	1 cut(s)	112
SmoI	CTYRAG	1 cut(s)	112
Sse9I	AATT	1 cut(s)	51
SspMI	CTAG	2 cut(s)	65, 77
TaaI	ACNGT	1 cut(s)	101
TaiI	ACGT	1 cut(s)	156
TasI	AATT	1 cut(s)	51
Tru1I	TTAA	2 cut(s)	93, 113
Tru9I	TTAA	2 cut(s)	93, 113
TscAI	CASTG	2 cut(s)	38, 106
TspDTI	ATGAA	1 cut(s)	182
TspRI	CASTG	2 cut(s)	38, 106
Vha464I	CTTAAG	1 cut(s)	112
XapI	RAATTY	1 cut(s)	51
XspI	CTAG	2 cut(s)	65, 77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.