Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002707

Physical Location & Seq

Genomic Coordinates Forward (+)

5253473 .. 5260817

Gene Structure 7345 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG062100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGACCCAGCAATTTTGTTCTATCGGATTTTTCCTTGGTTGGGAAGTGTTCAAGATGAATATGAGGTTGTTCGGAAGGTTGGAAAAGGAAAGTACAGTGAGGTCTTCGAGGGTATAAATGTCACCAACAATGAAAAATGCGTGATCAAGATCCTTAGACCAGTCAAGAAAAAGTGCAAAAATGATGAGGAAATTGTAGCTGTTCTAGCTCATGAGCTAGGCCATTGGAAGCTTAATCACAATGCTTCCACATTGGAGGTATTATTGAAGGGGCACTTGGCCACAATGACAAGAGTCCCCAGAGTCCCCCCACTCCACCACCCAGCCCAAGTGACACCTCTGTTGCCGGAGCCAGAGGTGATGGTTATGGTGGAGGCCGAGGCGGCGGCTATGGAAGCGGCCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0031974 GO:0031981 GO:0042752 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0065007 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169

Pfam Domains

Protein Families

Pkinase

Protein Analysis

135

Amino Acids

15.19

Weight (kDa)

7.02

Isoelectric Point (pI)

27.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M48	PF01435	51 - 89	2.1e-08	Peptidase family M48

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002707)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33300 FvH4_2g33300 FvH4_2g33300 FvH4_2g33300 FvH4_2g33300
malus_domestica	MD08G1087400.v1.1 MD15G1072400.v1.1 MD15G1314700.v1.1
prunus_persica	Prupe.1G425000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0357221 RchiOBHm_Chr1g0362391 RchiOBHm_Chr2g0131551 RchiOBHm_Chr6g0309321
rosa_laevigata	RLG00000009840 RLG00000010574 RLG00000021364 RLG00000031506
rosa_multiflora	Rmu_sc0003576.1_g000007 Rmu_sc0015692.1_g000002
rosa_roxburghii	Rroxscaffold_3G00228160 Rroxscaffold_6G00412270 Rroxscaffold_7G00159490
rosa_rugosa	Rorug01G0255000 Rorug05G0444500 Rorug05G0444500 Rorug06G0371000
rosa_samantha	Rh2BG357900 Rh5AG062100 Rh5AG134700 Rh5BG310400 Rh5DG320900 Rh6AG235600 Rh6AG484400 Rh6BG493500 Rh6CG498300 Rh6DG484800
rosa_wichuraiana	Rw6G028820 Rw6G042170 Rw7G020100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	383, 386, 398
AclWI	GGATC	1 cut(s)	145
AcoI	YGGCCR	2 cut(s)	279, 399
AfaI	GTAC	1 cut(s)	95
AfiI	CCNNNNNNNGG	1 cut(s)	41
AgsI	TTSAA	2 cut(s)	53, 268
AjuI	GAANNNNNNNTTGG	2 cut(s)	260, 292
AluBI	AGCT	4 cut(s)	200, 209, 217, 232
AluI	AGCT	4 cut(s)	200, 209, 217, 232
AlwI	GGATC	1 cut(s)	145
AoxI	GGCC	4 cut(s)	220, 279, 375, 399
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	2 cut(s)	115, 370
AvaII	GGWCC	1 cut(s)	4
BaeGI	GKGCMC	1 cut(s)	276
BalI	TGGCCA	1 cut(s)	281
BbsI	GAAGAC	1 cut(s)	97
BccI	CCATC	1 cut(s)	355
BclI	TGATCA	1 cut(s)	144
BfaI	CTAG	2 cut(s)	206, 218
BglI	GCCNNNNNGGC	1 cut(s)	383
BisI	GCNGC	3 cut(s)	384, 387, 399
BlsI	GCNGC	3 cut(s)	385, 388, 400
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	2 cut(s)	6, 351
BoxI	GACNNNNGTC	1 cut(s)	293
BpiI	GAAGAC	1 cut(s)	97
BsaBI	GATNNNNATC	1 cut(s)	149
BsaJI	CCNNGG	2 cut(s)	35, 378
Bsc4I	CCNNNNNNNGG	1 cut(s)	41
Bse1I	ACTGG	1 cut(s)	161
Bse8I	GATNNNNATC	1 cut(s)	149
BseDI	CCNNGG	2 cut(s)	35, 378
BseJI	GATNNNNATC	1 cut(s)	149
BseLI	CCNNNNNNNGG	1 cut(s)	41
BseNI	ACTGG	1 cut(s)	161
BseSI	GKGCMC	1 cut(s)	276
BseYI	CCCAGC	2 cut(s)	7, 322
BshFI	GGCC	4 cut(s)	222, 281, 377, 401
BsiSI	CCGG	1 cut(s)	347
BslFI	GGGAC	2 cut(s)	281, 290
BslI	CCNNNNNNNGG	1 cut(s)	41
BsmFI	GGGAC	2 cut(s)	281, 290
BsnI	GGCC	4 cut(s)	222, 281, 377, 401
Bsp1286I	GDGCHC	1 cut(s)	276
Bsp143I	GATC	2 cut(s)	144, 150
BspACI	CCGC	3 cut(s)	383, 386, 398
BspANI	GGCC	4 cut(s)	222, 281, 377, 401
BspHI	TCATGA	1 cut(s)	211
BspLI	GGNNCC	2 cut(s)	6, 351
BspPI	GGATC	1 cut(s)	145
BsrI	ACTGG	1 cut(s)	161
BssECI	CCNNGG	2 cut(s)	35, 378
BssMI	GATC	2 cut(s)	144, 150
BssT1I	CCWWGG	1 cut(s)	35
Bst4CI	ACNGT	1 cut(s)	98
BstDEI	CTNAG	1 cut(s)	155
BstKTI	GATC	2 cut(s)	147, 153
BstMBI	GATC	2 cut(s)	144, 150
BstMWI	GCNNNNNNNGC	3 cut(s)	206, 383, 395
BstPAI	GACNNNNGTC	1 cut(s)	293
BstSLI	GKGCMC	1 cut(s)	276
BstV2I	GAAGAC	1 cut(s)	97
BstX2I	RGATCY	1 cut(s)	150
BstYI	RGATCY	1 cut(s)	150
BsuRI	GGCC	4 cut(s)	222, 281, 377, 401
BtsIMutI	CAGTG	1 cut(s)	103
CciI	TCATGA	1 cut(s)	211
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	1 cut(s)	94
CviAII	CATG	1 cut(s)	212
CviQI	GTAC	1 cut(s)	94
DdeI	CTNAG	1 cut(s)	155
DpnI	GATC	2 cut(s)	146, 152
DpnII	GATC	2 cut(s)	144, 150
EaeI	YGGCCR	2 cut(s)	279, 399
Eco130I	CCWWGG	1 cut(s)	35
Eco47I	GGWCC	1 cut(s)	4
EcoT14I	CCWWGG	1 cut(s)	35
ErhI	CCWWGG	1 cut(s)	35
FaeI	CATG	1 cut(s)	215
FaiI	YATR	5 cut(s)	63, 116, 213, 368, 392
FalI	AAGNNNNNCTT	2 cut(s)	260, 292
FaqI	GGGAC	2 cut(s)	281, 290
FatI	CATG	1 cut(s)	211
FbaI	TGATCA	1 cut(s)	144
Fnu4HI	GCNGC	3 cut(s)	384, 387, 399
Fsp4HI	GCNGC	3 cut(s)	384, 387, 399
FspBI	CTAG	2 cut(s)	206, 218
GluI	GCNGC	3 cut(s)	384, 387, 399
GsaI	CCCAGC	2 cut(s)	11, 326
HaeIII	GGCC	4 cut(s)	222, 281, 377, 401
HapII	CCGG	1 cut(s)	347
Hin1II	CATG	1 cut(s)	215
HindIII	AAGCTT	1 cut(s)	230
HinfI	GANTC	2 cut(s)	294, 303
HpaII	CCGG	1 cut(s)	347
HphI	GGTGA	2 cut(s)	115, 370
Hpy188I	TCNGA	2 cut(s)	27, 75
Hpy188III	TCNNGA	4 cut(s)	53, 148, 166, 212
HpyAV	CCTTC	2 cut(s)	70, 262
HpyCH4III	ACNGT	1 cut(s)	98
HpyCH4V	TGCA	1 cut(s)	177
HpyF10VI	GCNNNNNNNGC	3 cut(s)	206, 383, 395
HpyF3I	CTNAG	1 cut(s)	155
Hsp92II	CATG	1 cut(s)	215
Ksp22I	TGATCA	1 cut(s)	144
Kzo9I	GATC	2 cut(s)	144, 150
LmnI	GCTCC	1 cut(s)	349
LpnPI	CCDG	6 cut(s)	21, 174, 313, 336, 360, 366
MaeI	CTAG	2 cut(s)	206, 218
MaeIII	GTNAC	2 cut(s)	121, 331
MalI	GATC	2 cut(s)	146, 152
MboI	GATC	2 cut(s)	144, 150
MboII	GAAGA	1 cut(s)	97
MflI	RGATCY	1 cut(s)	150
MhlI	GDGCHC	1 cut(s)	276
MlsI	TGGCCA	1 cut(s)	281
MluCI	AATT	2 cut(s)	12, 192
MluNI	TGGCCA	1 cut(s)	281
MlyI	GAGTC	2 cut(s)	303, 312
MmeI	TCCRAC	1 cut(s)	61
MnlI	CCTC	9 cut(s)	58, 94, 103, 181, 250, 348, 349, 367, 373
Mox20I	TGGCCA	1 cut(s)	281
MscI	TGGCCA	1 cut(s)	281
MseI	TTAA	1 cut(s)	234
Msp20I	TGGCCA	1 cut(s)	281
MspI	CCGG	1 cut(s)	347
MwoI	GCNNNNNNNGC	3 cut(s)	206, 383, 395
NdeII	GATC	2 cut(s)	144, 150
NlaIII	CATG	1 cut(s)	215
NlaIV	GGNNCC	2 cut(s)	6, 351
NmeAIII	GCCGAG	1 cut(s)	403
NmuCI	GTSAC	2 cut(s)	121, 331
PagI	TCATGA	1 cut(s)	211
PkrI	GCNGC	3 cut(s)	385, 388, 400
PleI	GAGTC	2 cut(s)	302, 311
PpsI	GAGTC	2 cut(s)	302, 311
PshAI	GACNNNNGTC	1 cut(s)	293
PspFI	CCCAGC	2 cut(s)	7, 322
PspN4I	GGNNCC	2 cut(s)	6, 351
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	1 cut(s)	150
RsaI	GTAC	1 cut(s)	95
RsaNI	GTAC	1 cut(s)	94
SaqAI	TTAA	1 cut(s)	234
SatI	GCNGC	3 cut(s)	384, 387, 399
Sau3AI	GATC	2 cut(s)	144, 150
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	2 cut(s)	303, 312
SduI	GDGCHC	1 cut(s)	276
SinI	GGWCC	1 cut(s)	4
Sse9I	AATT	2 cut(s)	12, 192
SsiI	CCGC	3 cut(s)	383, 386, 398
SspMI	CTAG	2 cut(s)	206, 218
StyI	CCWWGG	1 cut(s)	35
TaaI	ACNGT	1 cut(s)	98
TaqI	TCGA	1 cut(s)	108
TasI	AATT	2 cut(s)	12, 192
TatI	WGTACW	1 cut(s)	93
TauI	GCSGC	3 cut(s)	386, 389, 401
Tru1I	TTAA	1 cut(s)	234
Tru9I	TTAA	1 cut(s)	234
TscAI	CASTG	1 cut(s)	103
TseFI	GTSAC	2 cut(s)	121, 331
Tsp45I	GTSAC	2 cut(s)	121, 331
TspDTI	ATGAA	2 cut(s)	72, 147
TspRI	CASTG	1 cut(s)	103
VpaK11BI	GGWCC	1 cut(s)	4
XspI	CTAG	2 cut(s)	206, 218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.