Rroxscaffold_7G00159490
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
2688676 .. 2693051
4376 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00159490.1

Sequence Viewer

Length: 1209 bp
ATGGCATGGGATTTTGTCGTGTCCGCTTTGTCAAATTTAACTTTGAATTTAGGTCGATTTGGATATGAATTTAAGACCTCGGTAAATCGGAGAAAAGGCTCGAGCATCAGACGAGATACCCTTCCTCTCTCTTATAAACGAGTCCGTTTGAAATTGGATTCCGGGAATACCACCAAAATAAAACCAGCTTGTATTAAAAATGACATAATCTCAATTAAGAAAATCCGCGGTTGCTCTGCTAGGGCAACGTGGGTTTTGCTGCCATCCTCCACCGGAATCTTCAAAGAATCAAGGTCAAATCCGGTAGCCATGTCTAGGGCTCGAGTCTACGCCGACGTCAACGTTCAGCGCCCCAGAGATTACTGGGATTACGAATCTTTCGTCCTTCAATGGGGCGTTCAAGATGAATATGAGGTTGTTCGGAAGGTTGGAAGAGGAAAGTACAGTGAGGTCTTCGAGGGTATAAATGTCACCAACAATGAAAAATGCGTGATCAAGATCCTTAAACCAGTCAAGAAAAAGAAGATTAAAAGGGAGATAAAAATATTGCAGAATCTTTGTGGAGGTCCAAATATTGTGAAGCTGCTTGATATTGTCAGGGATGAGCTCTCAAAAACTCCTAGTTTAATCTTTGAACATGTCAACAGTACAGATTTCAAAGTGTTGTACCCCACACTGACAGATTACGACATTCGCTACTATATATATGAACTTCTCAAGGCATTGGATTACTGTCATTCCCAGGGCATAATGCATCGAGATGTGAAGCCTCACAACGTTATGATTGATCACGAGTTGCGGAAACTTCGCCTGATTGATTGGGGTCTTGCTGAATTCTACCATCCTGGCAAAGAATACAATGTCCGAGTAGCTTCAAGGCACTATAAAGGGCCTGAGCTCCTTGTTGATTTGCAAGACTATGACTATTCATTAGACATGTGGAGCCTTGGCTGTATGTTTGCTGGAATGATCTTTCGCAAGGAACAATTCTTTTATGGTCATGACAATCAGGACCAGCTAGTGAAAATCGCTAAGGCCATCGATTTTCTAGACAAGCTTCTTCGATATGATCATCAGGACAGGCTTACTGCAAGAGAAGCAATGTGGGCGTTCAATGTTATAAAAATTACAAGTTTTGCTAATTCCATGTTTCAGGCACATCCATACTTCTCAGAAGTGAGAAGCGCAGAAATTAGCCGGATTCAGTAA

Protein Analysis

402

Amino Acids

46.96

Weight (kDa)

9.43

Isoelectric Point (pI)

31.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 137 - 368 4.2e-55 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 139 - 343 2e-18 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 135, 1121
AatII GACGTC 1 cut(s) 339
AccI GTMKAC 1 cut(s) 327
AccII CGCG 1 cut(s) 228
AciI CCGC 4 cut(s) 24, 226, 228, 799
AclI AACGTT 2 cut(s) 342, 777
AclWI GGATC 1 cut(s) 493
AcsI RAATTY 4 cut(s) 34, 46, 68, 833
AcyI GRCGYC 1 cut(s) 336
AfaI GTAC 3 cut(s) 443, 649, 668
AfiI CCNNNNNNNGG 2 cut(s) 315, 391
AflIII ACRYGT 2 cut(s) 637, 936
AgsI TTSAA 9 cut(s) 46, 151, 283, 389, 401, 635, 658, 876, 1114
AjnI CCWGG 2 cut(s) 741, 844
AluBI AGCT 7 cut(s) 188, 583, 607, 872, 898, 1018, 1057
AluI AGCT 7 cut(s) 188, 583, 607, 872, 898, 1018, 1057
Alw21I GWGCWC 2 cut(s) 609, 900
AlwI GGATC 1 cut(s) 493
Ama87I CYCGRG 2 cut(s) 100, 321
AoxI GGCC 2 cut(s) 890, 1035
ApeKI GCWGC 2 cut(s) 259, 583
ApoI RAATTY 4 cut(s) 34, 46, 68, 833
ArsI GACNNNNNNTTYG 2 cut(s) 366, 398
AspLEI GCGC 2 cut(s) 351, 1187
AspS9I GGNCC 3 cut(s) 566, 890, 1012
AsuC2I CCSGG 1 cut(s) 163
AsuHPI GGTGA 1 cut(s) 463
AvaI CYCGRG 2 cut(s) 100, 321
AvaII GGWCC 2 cut(s) 566, 1012
BanII GRGCYC 3 cut(s) 322, 609, 900
BauI CACGAG 1 cut(s) 791
BbsI GAAGAC 1 cut(s) 445
Bbv12I GWGCWC 2 cut(s) 609, 900
BbvI GCAGC 2 cut(s) 246, 570
BccI CCATC 3 cut(s) 271, 849, 1046
BciT130I CCWGG 2 cut(s) 743, 846
BclI TGATCA 3 cut(s) 492, 787, 1069
BcnI CCSGG 1 cut(s) 163
BfaI CTAG 5 cut(s) 240, 315, 621, 1019, 1049
BfoI RGCGCY 1 cut(s) 352
BisI GCNGC 2 cut(s) 260, 584
BlsI GCNGC 2 cut(s) 261, 585
Bme1390I CCNGG 3 cut(s) 163, 743, 846
Bme18I GGWCC 2 cut(s) 566, 1012
BmeT110I CYCGRG 2 cut(s) 100, 321
BmgT120I GGNCC 3 cut(s) 566, 890, 1012
BmiI GGNNCC 1 cut(s) 944
BmrFI CCNGG 3 cut(s) 163, 743, 846
BmrI ACTGGG 1 cut(s) 373
BmsI GCATC 2 cut(s) 114, 763
BmuI ACTGGG 1 cut(s) 373
BpiI GAAGAC 1 cut(s) 445
Bpu10I CCTNAGC 2 cut(s) 894, 1032
BpuEI CTTGAG 1 cut(s) 701
BpuMI CCSGG 1 cut(s) 163
Bsa29I ATCGAT 1 cut(s) 1041
BsaBI GATNNNNATC 1 cut(s) 497
BsaHI GRCGYC 1 cut(s) 336
BsaJI CCNNGG 5 cut(s) 78, 226, 741, 742, 946
BsaWI WCCGGW 2 cut(s) 272, 301
Bsc4I CCNNNNNNNGG 2 cut(s) 315, 391
Bse1I ACTGG 2 cut(s) 368, 509
Bse3DI GCAATG 1 cut(s) 1107
Bse8I GATNNNNATC 1 cut(s) 497
BseBI CCWGG 2 cut(s) 743, 846
BseCI ATCGAT 1 cut(s) 1041
BseDI CCNNGG 5 cut(s) 78, 226, 741, 742, 946
BseGI GGATG 4 cut(s) 263, 607, 841, 1159
BseJI GATNNNNATC 1 cut(s) 497
BseLI CCNNNNNNNGG 2 cut(s) 315, 391
BseMI GCAATG 1 cut(s) 1107
BseMII CTCAG 2 cut(s) 885, 1185
BseNI ACTGG 2 cut(s) 368, 509
BseXI GCAGC 2 cut(s) 246, 570
Bsh1236I CGCG 1 cut(s) 228
BshFI GGCC 2 cut(s) 892, 1037
BshVI ATCGAT 1 cut(s) 1041
BsiHKAI GWGCWC 2 cut(s) 609, 900
BsiHKCI CYCGRG 2 cut(s) 100, 321
BsiSI CCGG 4 cut(s) 162, 273, 302, 1198
BslI CCNNNNNNNGG 2 cut(s) 315, 391
BsnI GGCC 2 cut(s) 892, 1037
BsoBI CYCGRG 2 cut(s) 100, 321
Bsp1286I GDGCHC 3 cut(s) 322, 609, 900
Bsp143I GATC 5 cut(s) 492, 498, 787, 969, 1069
BspACI CCGC 4 cut(s) 24, 226, 228, 799
BspANI GGCC 2 cut(s) 892, 1037
BspCNI CTCAG 2 cut(s) 886, 1184
BspDI ATCGAT 1 cut(s) 1041
BspFNI CGCG 1 cut(s) 228
BspHI TCATGA 1 cut(s) 1000
BspLI GGNNCC 1 cut(s) 944
BspPI GGATC 1 cut(s) 493
BsrDI GCAATG 1 cut(s) 1107
BsrI ACTGG 2 cut(s) 368, 509
BssECI CCNNGG 5 cut(s) 78, 226, 741, 742, 946
BssMI GATC 5 cut(s) 492, 498, 787, 969, 1069
BssNI GRCGYC 1 cut(s) 336
BssSI CACGAG 1 cut(s) 791
BssT1I CCWWGG 1 cut(s) 946
Bst2BI CACGAG 1 cut(s) 791
Bst2UI CCWGG 2 cut(s) 743, 846
Bst4CI ACNGT 3 cut(s) 446, 647, 734
Bst6I CTCTTC 1 cut(s) 427
BstACI GRCGYC 1 cut(s) 336
BstDEI CTNAG 3 cut(s) 894, 1032, 1171
BstDSI CCRYGG 1 cut(s) 226
BstF5I GGATG 4 cut(s) 263, 607, 841, 1159
BstFNI CGCG 1 cut(s) 228
BstH2I RGCGCY 1 cut(s) 352
BstHHI GCGC 2 cut(s) 351, 1187
BstKTI GATC 5 cut(s) 495, 501, 790, 972, 1072
BstMBI GATC 5 cut(s) 492, 498, 787, 969, 1069
BstMWI GCNNNNNNNGC 2 cut(s) 1097, 1106
BstNI CCWGG 2 cut(s) 743, 846
BstNSI RCATGY 2 cut(s) 641, 940
BstSCI CCNGG 3 cut(s) 161, 741, 844
BstUI CGCG 1 cut(s) 228
BstV1I GCAGC 2 cut(s) 246, 570
BstV2I GAAGAC 1 cut(s) 445
BstX2I RGATCY 1 cut(s) 498
BstYI RGATCY 1 cut(s) 498
Bsu15I ATCGAT 1 cut(s) 1041
BsuRI GGCC 2 cut(s) 892, 1037
BsuTUI ATCGAT 1 cut(s) 1041
BtgI CCRYGG 1 cut(s) 226
BtsCI GGATG 4 cut(s) 263, 607, 841, 1159
BtsIMutI CAGTG 2 cut(s) 451, 674
CciI TCATGA 1 cut(s) 1000
CfoI GCGC 2 cut(s) 351, 1187
Cfr13I GGNCC 3 cut(s) 566, 890, 1012
Cfr42I CCGCGG 1 cut(s) 229
ClaI ATCGAT 1 cut(s) 1041
Csp6I GTAC 3 cut(s) 442, 648, 667
CviAII CATG 6 cut(s) 6, 310, 638, 937, 1001, 1147
CviQI GTAC 3 cut(s) 442, 648, 667
DdeI CTNAG 3 cut(s) 894, 1032, 1171
DpnI GATC 5 cut(s) 494, 500, 789, 971, 1071
DpnII GATC 5 cut(s) 492, 498, 787, 969, 1069
Eam1104I CTCTTC 1 cut(s) 427
EarI CTCTTC 1 cut(s) 427
Ecl136II GAGCTC 2 cut(s) 607, 898
Eco130I CCWWGG 1 cut(s) 946
Eco24I GRGCYC 3 cut(s) 322, 609, 900
Eco47I GGWCC 2 cut(s) 566, 1012
Eco53kI GAGCTC 2 cut(s) 607, 898
Eco88I CYCGRG 2 cut(s) 100, 321
EcoICRI GAGCTC 2 cut(s) 607, 898
EcoO109I RGGNCCY 1 cut(s) 890
EcoRI GAATTC 1 cut(s) 833
EcoRII CCWGG 2 cut(s) 741, 844
EcoT14I CCWWGG 1 cut(s) 946
EcoT22I ATGCAT 1 cut(s) 756
EcoT38I GRGCYC 3 cut(s) 322, 609, 900
ErhI CCWWGG 1 cut(s) 946
FaeI CATG 6 cut(s) 9, 313, 641, 940, 1004, 1150
FatI CATG 6 cut(s) 5, 309, 637, 936, 1000, 1146
FbaI TGATCA 3 cut(s) 492, 787, 1069
FblI GTMKAC 1 cut(s) 327
Fnu4HI GCNGC 2 cut(s) 260, 584
FokI GGATG 4 cut(s) 250, 614, 828, 1146
FriOI GRGCYC 3 cut(s) 322, 609, 900
Fsp4HI GCNGC 2 cut(s) 260, 584
FspBI CTAG 5 cut(s) 240, 315, 621, 1019, 1049
GlaI GCGC 2 cut(s) 350, 1186
GluI GCNGC 2 cut(s) 260, 584
HaeII RGCGCY 1 cut(s) 352
HaeIII GGCC 2 cut(s) 892, 1037
HapII CCGG 4 cut(s) 162, 273, 302, 1198
HhaI GCGC 2 cut(s) 351, 1187
Hin1I GRCGYC 1 cut(s) 336
Hin1II CATG 6 cut(s) 9, 313, 641, 940, 1004, 1150
Hin6I GCGC 2 cut(s) 349, 1185
HinP1I GCGC 2 cut(s) 349, 1185
HincII GTYRAC 2 cut(s) 340, 643
HindII GTYRAC 2 cut(s) 340, 643
HindIII AAGCTT 1 cut(s) 1055
HinfI GANTC 8 cut(s) 141, 158, 276, 287, 324, 374, 553, 1201
HpaII CCGG 4 cut(s) 162, 273, 302, 1198
HphI GGTGA 1 cut(s) 463
Hpy166II GTNNAC 3 cut(s) 328, 340, 643
Hpy188I TCNGA 5 cut(s) 90, 110, 423, 866, 1174
Hpy188III TCNNGA 9 cut(s) 401, 496, 514, 758, 791, 1001, 1010, 1049, 1076
Hpy8I GTNNAC 3 cut(s) 328, 340, 643
Hpy99I CGWCG 1 cut(s) 338
HpyAV CCTTC 3 cut(s) 131, 395, 418
HpyCH4III ACNGT 3 cut(s) 446, 647, 734
HpyCH4IV ACGT 4 cut(s) 248, 336, 342, 777
HpyCH4V TGCA 4 cut(s) 550, 754, 913, 1091
HpyF10VI GCNNNNNNNGC 2 cut(s) 1097, 1106
HpyF3I CTNAG 3 cut(s) 894, 1032, 1171
HpySE526I ACGT 4 cut(s) 248, 336, 342, 777
Hsp92I GRCGYC 1 cut(s) 336
Hsp92II CATG 6 cut(s) 9, 313, 641, 940, 1004, 1150
HspAI GCGC 2 cut(s) 349, 1185
Ksp22I TGATCA 3 cut(s) 492, 787, 1069
KspI CCGCGG 1 cut(s) 229
Kzo9I GATC 5 cut(s) 492, 498, 787, 969, 1069
LmnI GCTCC 2 cut(s) 903, 942
Lsp1109I GCAGC 2 cut(s) 246, 570
LweI GCATC 2 cut(s) 114, 763
MaeI CTAG 5 cut(s) 240, 315, 621, 1019, 1049
MaeII ACGT 4 cut(s) 248, 336, 342, 777
MaeIII GTNAC 1 cut(s) 469
MalI GATC 5 cut(s) 494, 500, 789, 971, 1071
MboI GATC 5 cut(s) 492, 498, 787, 969, 1069
MboII GAAGA 5 cut(s) 271, 444, 445, 535, 1052
MflI RGATCY 1 cut(s) 498
MhlI GDGCHC 3 cut(s) 322, 609, 900
MlyI GAGTC 2 cut(s) 150, 333
MmeI TCCRAC 1 cut(s) 409
MnlI CCTC 9 cut(s) 88, 135, 277, 406, 428, 442, 451, 557, 780
Mph1103I ATGCAT 1 cut(s) 756
MseI TTAA 7 cut(s) 38, 72, 195, 216, 504, 528, 626
MslI CAYNNNNRTG 1 cut(s) 759
MspA1I CMGCKG 1 cut(s) 228
MspI CCGG 4 cut(s) 162, 273, 302, 1198
MspR9I CCNGG 3 cut(s) 163, 743, 846
MvaI CCWGG 2 cut(s) 743, 846
MvnI CGCG 1 cut(s) 228
MwoI GCNNNNNNNGC 2 cut(s) 1097, 1106
NciI CCSGG 1 cut(s) 163
NdeII GATC 5 cut(s) 492, 498, 787, 969, 1069
NlaIII CATG 6 cut(s) 9, 313, 641, 940, 1004, 1150
NlaIV GGNNCC 1 cut(s) 944
NmuCI GTSAC 1 cut(s) 469
NsiI ATGCAT 1 cut(s) 756
NspI RCATGY 2 cut(s) 641, 940
PaeR7I CTCGAG 2 cut(s) 100, 321
PagI TCATGA 1 cut(s) 1000
PasI CCCWGGG 1 cut(s) 742
PciI ACATGT 2 cut(s) 637, 936
PcsI WCGNNNNNNNCGW 1 cut(s) 378
PfeI GAWTC 6 cut(s) 158, 276, 287, 374, 553, 1201
PfoI TCCNGGA 1 cut(s) 161
PkrI GCNGC 2 cut(s) 261, 585
PleI GAGTC 2 cut(s) 149, 332
PpsI GAGTC 2 cut(s) 149, 332
PscI ACATGT 2 cut(s) 637, 936
PsiI TTATAA 2 cut(s) 135, 1121
Psp124BI GAGCTC 2 cut(s) 609, 900
Psp1406I AACGTT 2 cut(s) 342, 777
Psp6I CCWGG 2 cut(s) 741, 844
PspGI CCWGG 2 cut(s) 741, 844
PspN4I GGNNCC 1 cut(s) 944
PspPI GGNCC 3 cut(s) 566, 890, 1012
PspXI VCTCGAGB 2 cut(s) 100, 321
PsuI RGATCY 1 cut(s) 498
RsaI GTAC 3 cut(s) 443, 649, 668
RsaNI GTAC 3 cut(s) 442, 648, 667
RseI CAYNNNNRTG 1 cut(s) 759
SacI GAGCTC 2 cut(s) 609, 900
SacII CCGCGG 1 cut(s) 229
SaqAI TTAA 7 cut(s) 38, 72, 195, 216, 504, 528, 626
SatI GCNGC 2 cut(s) 260, 584
Sau3AI GATC 5 cut(s) 492, 498, 787, 969, 1069
Sau96I GGNCC 3 cut(s) 566, 890, 1012
SchI GAGTC 2 cut(s) 150, 333
ScrFI CCNGG 3 cut(s) 163, 743, 846
SduI GDGCHC 3 cut(s) 322, 609, 900
SfaNI GCATC 2 cut(s) 114, 763
Sfr274I CTCGAG 2 cut(s) 100, 321
Sfr303I CCGCGG 1 cut(s) 229
SgrBI CCGCGG 1 cut(s) 229
SinI GGWCC 2 cut(s) 566, 1012
SlaI CTCGAG 2 cut(s) 100, 321
SmiMI CAYNNNNRTG 1 cut(s) 759
SmlI CTYRAG 3 cut(s) 100, 321, 716
SmoI CTYRAG 3 cut(s) 100, 321, 716
SsiI CCGC 4 cut(s) 24, 226, 228, 799
SspI AATATT 2 cut(s) 546, 574
SspMI CTAG 5 cut(s) 240, 315, 621, 1019, 1049
SstI GAGCTC 2 cut(s) 609, 900
StyD4I CCNGG 3 cut(s) 161, 741, 844
StyI CCWWGG 1 cut(s) 946
TaaI ACNGT 3 cut(s) 446, 647, 734
TaiI ACGT 4 cut(s) 251, 339, 345, 780
TaqI TCGA 7 cut(s) 55, 101, 322, 456, 757, 1041, 1063
TatI WGTACW 2 cut(s) 441, 647
TfiI GAWTC 6 cut(s) 158, 276, 287, 374, 553, 1201
Tru1I TTAA 7 cut(s) 38, 72, 195, 216, 504, 528, 626
Tru9I TTAA 7 cut(s) 38, 72, 195, 216, 504, 528, 626
TscAI CASTG 2 cut(s) 451, 681
TseFI GTSAC 1 cut(s) 469
TseI GCWGC 2 cut(s) 259, 583
Tsp45I GTSAC 1 cut(s) 469
TspDTI ATGAA 5 cut(s) 81, 420, 495, 723, 918
TspGWI ACGGA 1 cut(s) 134
TspRI CASTG 2 cut(s) 451, 681
VpaK11BI GGWCC 2 cut(s) 566, 1012
XapI RAATTY 4 cut(s) 34, 46, 68, 833
XbaI TCTAGA 1 cut(s) 1048
XceI RCATGY 2 cut(s) 641, 940
XhoI CTCGAG 2 cut(s) 100, 321
XmiI GTMKAC 1 cut(s) 327
XspI CTAG 5 cut(s) 240, 315, 621, 1019, 1049
ZraI GACGTC 1 cut(s) 337
Zsp2I ATGCAT 1 cut(s) 756
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.