Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0002707

Physical Location & Seq

Genomic Coordinates Forward (+)

42017968 .. 42018464

Gene Structure 497 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG235600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGGTAGATGCCTATATGTATGGATTTTTTAAGAACAAGAGGATTGTCCTTTATGATACACTGATCCAGCAGTGCAAAAATGATGAGGAAATTGTAGCTATTCTAGCTCATGAGCTAGGCCATTGGAAGCTTAATCACAGTGTATACTTATTCATTTCTATACAGATCCGTACGCTGTTACACTTTGGGGGATATGCTCTCCTGAGAAACTCCAGCAGTCTATTTCATACTTTGGGGGATATGCAGTCCTACTTTGTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016021 GO:0016485 GO:0016787 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0070011 GO:0071586 GO:0071704 GO:0080120 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Peptidase_M48 Peptidase_M48_N

Protein Analysis

87

Amino Acids

10.22

Weight (kDa)

6.49

Isoelectric Point (pI)

38.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M48	PF01435	2 - 79	6.1e-21	Peptidase family M48

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002707)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33300 FvH4_2g33300 FvH4_2g33300 FvH4_2g33300 FvH4_2g33300
malus_domestica	MD08G1087400.v1.1 MD15G1072400.v1.1 MD15G1314700.v1.1
prunus_persica	Prupe.1G425000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0357221 RchiOBHm_Chr1g0362391 RchiOBHm_Chr2g0131551 RchiOBHm_Chr6g0309321
rosa_laevigata	RLG00000009840 RLG00000010574 RLG00000021364 RLG00000031506
rosa_multiflora	Rmu_sc0003576.1_g000007 Rmu_sc0015692.1_g000002
rosa_roxburghii	Rroxscaffold_3G00228160 Rroxscaffold_6G00412270 Rroxscaffold_7G00159490
rosa_rugosa	Rorug01G0255000 Rorug05G0444500 Rorug05G0444500 Rorug06G0371000
rosa_samantha	Rh2BG357900 Rh5AG062100 Rh5AG134700 Rh5BG310400 Rh5DG320900 Rh6AG235600 Rh6AG484400 Rh6BG493500 Rh6CG498300 Rh6DG484800
rosa_wichuraiana	Rw6G028820 Rw6G042170 Rw7G020100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	144
AclWI	GGATC	2 cut(s)	58, 160
AfaI	GTAC	1 cut(s)	172
AgsI	TTSAA	1 cut(s)	260
AluBI	AGCT	4 cut(s)	98, 107, 115, 130
AluI	AGCT	4 cut(s)	98, 107, 115, 130
AlwI	GGATC	2 cut(s)	58, 160
AoxI	GGCC	1 cut(s)	118
BfaI	CTAG	2 cut(s)	104, 116
BpmI	CTGGAG	1 cut(s)	196
BseMII	CTCAG	1 cut(s)	194
BshFI	GGCC	1 cut(s)	120
BsiWI	CGTACG	1 cut(s)	170
BsnI	GGCC	1 cut(s)	120
Bsp143I	GATC	2 cut(s)	63, 165
BspANI	GGCC	1 cut(s)	120
BspCNI	CTCAG	1 cut(s)	195
BspHI	TCATGA	1 cut(s)	109
BspPI	GGATC	2 cut(s)	58, 160
BssMI	GATC	2 cut(s)	63, 165
BssNAI	GTATAC	1 cut(s)	145
Bst1107I	GTATAC	1 cut(s)	145
Bst4CI	ACNGT	1 cut(s)	140
BstDEI	CTNAG	1 cut(s)	203
BstKTI	GATC	2 cut(s)	66, 168
BstMBI	GATC	2 cut(s)	63, 165
BstMWI	GCNNNNNNNGC	1 cut(s)	104
BstX2I	RGATCY	1 cut(s)	165
BstYI	RGATCY	1 cut(s)	165
BstZ17I	GTATAC	1 cut(s)	145
BsuRI	GGCC	1 cut(s)	120
BtsI	GCAGTG	1 cut(s)	77
BtsIMutI	CAGTG	3 cut(s)	59, 77, 145
CciI	TCATGA	1 cut(s)	109
Csp6I	GTAC	1 cut(s)	171
CviAII	CATG	1 cut(s)	110
CviJI	RGCY	5 cut(s)	98, 107, 115, 120, 130
CviKI_1	RGCY	5 cut(s)	98, 107, 115, 120, 130
CviQI	GTAC	1 cut(s)	171
DdeI	CTNAG	1 cut(s)	203
DpnI	GATC	2 cut(s)	65, 167
DpnII	GATC	2 cut(s)	63, 165
FaeI	CATG	1 cut(s)	113
FatI	CATG	1 cut(s)	109
FblI	GTMKAC	1 cut(s)	144
FspBI	CTAG	2 cut(s)	104, 116
GsuI	CTGGAG	1 cut(s)	196
HaeIII	GGCC	1 cut(s)	120
Hin1II	CATG	1 cut(s)	113
HindIII	AAGCTT	1 cut(s)	128
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188III	TCNNGA	2 cut(s)	110, 202
Hpy8I	GTNNAC	1 cut(s)	145
HpyCH4III	ACNGT	1 cut(s)	140
HpyCH4V	TGCA	2 cut(s)	75, 244
HpyF10VI	GCNNNNNNNGC	1 cut(s)	104
HpyF3I	CTNAG	1 cut(s)	203
Hsp92II	CATG	1 cut(s)	113
Kzo9I	GATC	2 cut(s)	63, 165
LpnPI	CCDG	3 cut(s)	80, 215, 226
MaeI	CTAG	2 cut(s)	104, 116
MaeIII	GTNAC	1 cut(s)	177
MalI	GATC	2 cut(s)	65, 167
MboI	GATC	2 cut(s)	63, 165
MflI	RGATCY	1 cut(s)	165
MluCI	AATT	1 cut(s)	90
MnlI	CCTC	2 cut(s)	33, 79
MseI	TTAA	2 cut(s)	30, 132
MwoI	GCNNNNNNNGC	1 cut(s)	104
NdeII	GATC	2 cut(s)	63, 165
NlaIII	CATG	1 cut(s)	113
PagI	TCATGA	1 cut(s)	109
Pfl23II	CGTACG	1 cut(s)	170
PspLI	CGTACG	1 cut(s)	170
PsuI	RGATCY	1 cut(s)	165
RsaI	GTAC	1 cut(s)	172
RsaNI	GTAC	1 cut(s)	171
SaqAI	TTAA	2 cut(s)	30, 132
Sau3AI	GATC	2 cut(s)	63, 165
SetI	ASST	4 cut(s)	100, 109, 117, 132
SgeI	CNNG	7 cut(s)	49, 79, 116, 122, 128, 214, 225
Sse9I	AATT	1 cut(s)	90
SspMI	CTAG	2 cut(s)	104, 116
TaaI	ACNGT	1 cut(s)	140
TasI	AATT	1 cut(s)	90
Tru1I	TTAA	2 cut(s)	30, 132
Tru9I	TTAA	2 cut(s)	30, 132
TscAI	CASTG	3 cut(s)	66, 77, 145
TspDTI	ATGAA	2 cut(s)	142, 215
TspGWI	ACGGA	1 cut(s)	158
TspRI	CASTG	3 cut(s)	66, 77, 145
XmiI	GTMKAC	1 cut(s)	144
XspI	CTAG	2 cut(s)	104, 116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.