MD17G1137100.v1.1

Transmembrane protein 205

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0003018
Physical Location & Seq
Reverse (-)
12272537 .. 12272866
330 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1137100.v1.1.491

Sequence Viewer

Length: 330 bp
ATGTTCAATAATCTTCTGCGACATCAGTTCGGGAATCTTCGGAGCAAGATGTTTTTGGCATACTTCACGATAGTGGGGATATGCCTTGTAGTATCAGCTGGGTCGTTTGGGTATTTGCATCCGTGGAGCTCTTCCTCTGTTGCCAATAAGTACCAGCTCGACTTTTTGCTATCTGCCTCTGCTTTCAATCTCACCAATCTCTTCGTCTTCACTCCCATGACCATCGAGACTCGCCCCACCGAGGACCAGGTGTGGGTCGCGTCGGATGCCCTGCGGAATGCCCATCCTCTTCACCGACAGACAAAAAGGTTTATACTTTGGCTGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4149

Protein Analysis

110

Amino Acids

12.58

Weight (kDa)

10.01

Isoelectric Point (pI)

44.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4149 PF13664 1 - 78 1.1e-13 Domain of unknown function (DUF4149)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 260
AciI CCGC 1 cut(s) 274
AfaI GTAC 1 cut(s) 152
AfiI CCNNNNNNNGG 2 cut(s) 241, 253
AgsI TTSAA 2 cut(s) 7, 187
AjnI CCWGG 1 cut(s) 246
AleI CACNNNNGTG 1 cut(s) 71
AluBI AGCT 3 cut(s) 98, 129, 157
AluI AGCT 3 cut(s) 98, 129, 157
Alw21I GWGCWC 1 cut(s) 131
Alw26I GTCTC 1 cut(s) 221
AspS9I GGNCC 1 cut(s) 244
AsuHPI GGTGA 2 cut(s) 184, 284
AvaII GGWCC 1 cut(s) 244
BanII GRGCYC 1 cut(s) 131
BbsI GAAGAC 1 cut(s) 199
Bbv12I GWGCWC 1 cut(s) 131
BbvCI CCTCAGC 1 cut(s) 323
BccI CCATC 2 cut(s) 230, 291
BciT130I CCWGG 1 cut(s) 248
BcoDI GTCTC 1 cut(s) 221
Bme1390I CCNGG 1 cut(s) 248
Bme18I GGWCC 1 cut(s) 244
BmgT120I GGNCC 1 cut(s) 244
BmrFI CCNGG 1 cut(s) 248
BmsI GCATC 2 cut(s) 127, 256
BpiI GAAGAC 1 cut(s) 199
Bpu10I CCTNAGC 1 cut(s) 323
BsaJI CCNNGG 2 cut(s) 122, 240
Bsc4I CCNNNNNNNGG 2 cut(s) 241, 253
BseBI CCWGG 1 cut(s) 248
BseDI CCNNGG 2 cut(s) 122, 240
BseGI GGATG 3 cut(s) 118, 271, 283
BseLI CCNNNNNNNGG 2 cut(s) 241, 253
BseMII CTCAG 1 cut(s) 314
BseYI CCCAGC 1 cut(s) 98
Bsh1236I CGCG 1 cut(s) 260
BsiHKAI GWGCWC 1 cut(s) 131
BslI CCNNNNNNNGG 2 cut(s) 241, 253
BsmAI GTCTC 1 cut(s) 221
BsmI GAATGC 1 cut(s) 283
Bsp1286I GDGCHC 1 cut(s) 131
BspACI CCGC 1 cut(s) 274
BspCNI CTCAG 1 cut(s) 315
BspFNI CGCG 1 cut(s) 260
BspQI GCTCTTC 1 cut(s) 136
BssECI CCNNGG 2 cut(s) 122, 240
Bst2UI CCWGG 1 cut(s) 248
Bst6I CTCTTC 3 cut(s) 136, 206, 294
BstDEI CTNAG 1 cut(s) 323
BstDSI CCRYGG 1 cut(s) 122
BstF5I GGATG 3 cut(s) 118, 271, 283
BstFNI CGCG 1 cut(s) 260
BstMAI GTCTC 1 cut(s) 221
BstMWI GCNNNNNNNGC 1 cut(s) 266
BstNI CCWGG 1 cut(s) 248
BstSCI CCNGG 1 cut(s) 246
BstUI CGCG 1 cut(s) 260
BstV2I GAAGAC 1 cut(s) 199
BtgI CCRYGG 1 cut(s) 122
BtsCI GGATG 3 cut(s) 118, 271, 283
Cfr13I GGNCC 1 cut(s) 244
CseI GACGC 1 cut(s) 249
CsiI ACCWGGT 1 cut(s) 246
Csp6I GTAC 1 cut(s) 151
CviAII CATG 1 cut(s) 217
CviJI RGCY 4 cut(s) 98, 129, 157, 322
CviKI_1 RGCY 4 cut(s) 98, 129, 157, 322
CviQI GTAC 1 cut(s) 151
DdeI CTNAG 1 cut(s) 323
Eam1104I CTCTTC 3 cut(s) 136, 206, 294
EarI CTCTTC 3 cut(s) 136, 206, 294
Ecl136II GAGCTC 1 cut(s) 129
Eco24I GRGCYC 1 cut(s) 131
Eco47I GGWCC 1 cut(s) 244
Eco53kI GAGCTC 1 cut(s) 129
EcoICRI GAGCTC 1 cut(s) 129
EcoRII CCWGG 1 cut(s) 246
EcoT38I GRGCYC 1 cut(s) 131
FaeI CATG 1 cut(s) 220
FaiI YATR 4 cut(s) 61, 82, 218, 314
FatI CATG 1 cut(s) 216
FokI GGATG 3 cut(s) 105, 270, 278
FriOI GRGCYC 1 cut(s) 131
GsaI CCCAGC 1 cut(s) 102
HgaI GACGC 1 cut(s) 249
Hin1II CATG 1 cut(s) 220
HinfI GANTC 2 cut(s) 34, 229
HphI GGTGA 2 cut(s) 184, 284
Hpy188I TCNGA 2 cut(s) 42, 265
Hpy188III TCNNGA 3 cut(s) 31, 67, 226
Hpy99I CGWCG 1 cut(s) 265
HpyCH4V TGCA 1 cut(s) 118
HpyF10VI GCNNNNNNNGC 1 cut(s) 266
HpyF3I CTNAG 1 cut(s) 323
Hsp92II CATG 1 cut(s) 220
LguI GCTCTTC 1 cut(s) 136
LmnI GCTCC 2 cut(s) 42, 126
LpnPI CCDG 5 cut(s) 84, 167, 233, 260, 284
LweI GCATC 2 cut(s) 127, 256
MabI ACCWGGT 1 cut(s) 246
MboII GAAGA 6 cut(s) 5, 29, 123, 193, 199, 281
MhlI GDGCHC 1 cut(s) 131
MlyI GAGTC 1 cut(s) 223
MmeI TCCRAC 1 cut(s) 243
MnlI CCTC 5 cut(s) 145, 187, 235, 297, 318
MslI CAYNNNNRTG 2 cut(s) 71, 215
MspA1I CMGCKG 1 cut(s) 98
MspR9I CCNGG 1 cut(s) 248
Mva1269I GAATGC 1 cut(s) 283
MvaI CCWGG 1 cut(s) 248
MvnI CGCG 1 cut(s) 260
MwoI GCNNNNNNNGC 1 cut(s) 266
NlaIII CATG 1 cut(s) 220
OliI CACNNNNGTG 1 cut(s) 71
PciSI GCTCTTC 1 cut(s) 136
PctI GAATGC 1 cut(s) 283
PfeI GAWTC 1 cut(s) 34
PleI GAGTC 1 cut(s) 223
PpsI GAGTC 1 cut(s) 223
Psp124BI GAGCTC 1 cut(s) 131
Psp6I CCWGG 1 cut(s) 246
PspFI CCCAGC 1 cut(s) 98
PspGI CCWGG 1 cut(s) 246
PspPI GGNCC 1 cut(s) 244
PvuII CAGCTG 1 cut(s) 98
RsaI GTAC 1 cut(s) 152
RsaNI GTAC 1 cut(s) 151
RseI CAYNNNNRTG 2 cut(s) 71, 215
SacI GAGCTC 1 cut(s) 131
SapI GCTCTTC 1 cut(s) 136
Sau96I GGNCC 1 cut(s) 244
SchI GAGTC 1 cut(s) 223
ScrFI CCNGG 1 cut(s) 248
SduI GDGCHC 1 cut(s) 131
SetI ASST 6 cut(s) 100, 131, 159, 252, 311, 329
SexAI ACCWGGT 1 cut(s) 246
SfaNI GCATC 2 cut(s) 127, 256
SinI GGWCC 1 cut(s) 244
SmiMI CAYNNNNRTG 2 cut(s) 71, 215
SsiI CCGC 1 cut(s) 274
SstI GAGCTC 1 cut(s) 131
StyD4I CCNGG 1 cut(s) 246
TaqI TCGA 2 cut(s) 159, 225
TfiI GAWTC 1 cut(s) 34
TspGWI ACGGA 1 cut(s) 111
VpaK11BI GGWCC 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.