Rroxscaffold_3G00218680

Transmembrane protein 205

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0003018
Physical Location & Seq
Reverse (-)
970739 .. 972196
1458 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00218680.1

Sequence Viewer

Length: 642 bp
ATGGGTTGGCTGACTCGATTTCTAGCGGCCGTGGCTTTCTTAGCCATCGGAGTGATTTTCTCGCCGGAGACTTTCGGATCAAAATCGGACGGTCCGAAGTCGCCGACACTCTCTACCTACCTGAAGCTGGCTCATCTGCTCAGCTTCTCCACCGCGTTCGGCGCCGCTCTCTGGGTCACTTTCATCGGCGGCATCATCATGTTCAAGAATCTTCCGAGGCATCAGTTCGGTAATCTGCAGAGCAAGATGTTTCCAGCTTATTTCAGCCTGGTGGGGATTTGCTGTGCCGTATCGGTTGCTTCGTTTGGGTATTTGCATCCGTGGAACTCTTCCACTGTAGCAGACAAGTACCAGCTCGGCTTTTTGCTTTCTTCCTTGGCCTTCAATCTCACCAATTTGTTCGTCTTCACGCCCATGACTATTGAGATGATGAAGCAGAGGCATAAGGTAGAGAGGGAAGAGAACATTGGGGAAGAAGTTGGATGGTCCAAAAATGTGCAAGTTGCAAAGGTGAACCCGAAACTAGCAGCCATGAATAAGAAGTTTGGAATGATTCACGGGTTATCATCCCTTGCCAATATTATGGCCTTTGGCAGCCTTGCCATGCACTCATGGTACTTGGCAGGTAAACTTAATCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4149

Protein Analysis

213

Amino Acids

23.49

Weight (kDa)

9.7

Isoelectric Point (pI)

36.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4149 PF13664 47 - 149 3.3e-31 Domain of unknown function (DUF4149)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 614
AccB1I GGYRCC 1 cut(s) 161
AccBSI CCGCTC 1 cut(s) 167
AccII CGCG 1 cut(s) 155
AciI CCGC 4 cut(s) 26, 153, 165, 189
AclWI GGATC 1 cut(s) 85
AcoI YGGCCR 1 cut(s) 27
AcuI CTGAAG 1 cut(s) 143
AcyI GRCGYC 1 cut(s) 162
AfaI GTAC 2 cut(s) 350, 617
AfiI CCNNNNNNNGG 2 cut(s) 127, 171
AgsI TTSAA 2 cut(s) 205, 385
AjnI CCWGG 1 cut(s) 267
AjuI GAANNNNNNNTTGG 2 cut(s) 450, 482
AluBI AGCT 4 cut(s) 127, 144, 257, 355
AluI AGCT 4 cut(s) 127, 144, 257, 355
Alw26I GTCTC 1 cut(s) 62
AlwI GGATC 1 cut(s) 85
AoxI GGCC 3 cut(s) 27, 378, 585
ApeKI GCWGC 2 cut(s) 527, 594
AspLEI GCGC 1 cut(s) 164
AspS9I GGNCC 2 cut(s) 92, 486
AsuHPI GGTGA 2 cut(s) 382, 523
AvaII GGWCC 2 cut(s) 92, 486
BanI GGYRCC 1 cut(s) 161
BbsI GAAGAC 1 cut(s) 397
BbvI GCAGC 2 cut(s) 539, 606
BccI CCATC 2 cut(s) 53, 477
BceAI ACGGC 2 cut(s) 14, 272
BciT130I CCWGG 1 cut(s) 269
BcoDI GTCTC 1 cut(s) 62
BfaI CTAG 2 cut(s) 23, 524
BfmI CTRYAG 3 cut(s) 236, 336, 638
BfoI RGCGCY 1 cut(s) 165
BfuAI ACCTGC 1 cut(s) 614
BisI GCNGC 5 cut(s) 27, 165, 190, 528, 595
BlpI GCTNAGC 1 cut(s) 140
BlsI GCNGC 5 cut(s) 28, 166, 191, 529, 596
Bme1390I CCNGG 1 cut(s) 269
Bme18I GGWCC 2 cut(s) 92, 486
BmgT120I GGNCC 2 cut(s) 92, 486
BmiI GGNNCC 1 cut(s) 163
BmrFI CCNGG 1 cut(s) 269
BmsI GCATC 3 cut(s) 201, 229, 325
BpiI GAAGAC 1 cut(s) 397
Bpu1102I GCTNAGC 1 cut(s) 140
BsaBI GATNNNNATC 1 cut(s) 82
BsaHI GRCGYC 1 cut(s) 162
BsaJI CCNNGG 4 cut(s) 30, 215, 320, 375
Bsc4I CCNNNNNNNGG 2 cut(s) 127, 171
Bse8I GATNNNNATC 1 cut(s) 82
BseBI CCWGG 1 cut(s) 269
BseDI CCNNGG 4 cut(s) 30, 215, 320, 375
BseGI GGATG 3 cut(s) 316, 488, 566
BseJI GATNNNNATC 1 cut(s) 82
BseLI CCNNNNNNNGG 2 cut(s) 127, 171
BseMII CTCAG 1 cut(s) 154
BseX3I CGGCCG 1 cut(s) 27
BseXI GCAGC 2 cut(s) 539, 606
Bsh1236I CGCG 1 cut(s) 155
Bsh1285I CGRYCG 1 cut(s) 30
BshFI GGCC 3 cut(s) 29, 380, 587
BshNI GGYRCC 1 cut(s) 161
BsiEI CGRYCG 1 cut(s) 30
BsiSI CCGG 1 cut(s) 65
BslI CCNNNNNNNGG 2 cut(s) 127, 171
BsmAI GTCTC 1 cut(s) 62
BsnI GGCC 3 cut(s) 29, 380, 587
Bsp143I GATC 1 cut(s) 77
Bsp1720I GCTNAGC 1 cut(s) 140
BspACI CCGC 4 cut(s) 26, 153, 165, 189
BspANI GGCC 3 cut(s) 29, 380, 587
BspCNI CTCAG 1 cut(s) 153
BspFNI CGCG 1 cut(s) 155
BspLI GGNNCC 1 cut(s) 163
BspMAI CTGCAG 1 cut(s) 240
BspMI ACCTGC 1 cut(s) 614
BspPI GGATC 1 cut(s) 85
BspT107I GGYRCC 1 cut(s) 161
BsrBI CCGCTC 1 cut(s) 167
BssECI CCNNGG 4 cut(s) 30, 215, 320, 375
BssMI GATC 1 cut(s) 77
BssNI GRCGYC 1 cut(s) 162
BssT1I CCWWGG 1 cut(s) 375
Bst2UI CCWGG 1 cut(s) 269
Bst4CI ACNGT 2 cut(s) 92, 337
Bst6I CTCTTC 2 cut(s) 334, 453
BstACI GRCGYC 1 cut(s) 162
BstC8I GCNNGC 1 cut(s) 129
BstDEI CTNAG 2 cut(s) 40, 140
BstDSI CCRYGG 2 cut(s) 30, 320
BstF5I GGATG 3 cut(s) 316, 488, 566
BstFNI CGCG 1 cut(s) 155
BstH2I RGCGCY 1 cut(s) 165
BstHHI GCGC 1 cut(s) 164
BstKTI GATC 1 cut(s) 80
BstMAI GTCTC 1 cut(s) 62
BstMBI GATC 1 cut(s) 77
BstMCI CGRYCG 1 cut(s) 30
BstMWI GCNNNNNNNGC 3 cut(s) 32, 41, 161
BstNI CCWGG 1 cut(s) 269
BstSCI CCNGG 1 cut(s) 267
BstSFI CTRYAG 3 cut(s) 236, 336, 638
BstUI CGCG 1 cut(s) 155
BstV1I GCAGC 2 cut(s) 539, 606
BstV2I GAAGAC 1 cut(s) 397
BstXI CCANNNNNNTGG 1 cut(s) 583
BstZI CGGCCG 1 cut(s) 27
BsuRI GGCC 3 cut(s) 29, 380, 587
BtgI CCRYGG 2 cut(s) 30, 320
BtsCI GGATG 3 cut(s) 316, 488, 566
BtsIMutI CAGTG 1 cut(s) 333
BveI ACCTGC 1 cut(s) 614
Cac8I GCNNGC 1 cut(s) 129
CfoI GCGC 1 cut(s) 164
Cfr13I GGNCC 2 cut(s) 92, 486
CpoI CGGWCCG 1 cut(s) 92
Csp6I GTAC 2 cut(s) 349, 616
CspI CGGWCCG 1 cut(s) 92
CviAII CATG 5 cut(s) 199, 415, 532, 604, 612
CviQI GTAC 2 cut(s) 349, 616
DdeI CTNAG 2 cut(s) 40, 140
DinI GGCGCC 1 cut(s) 163
DpnI GATC 1 cut(s) 79
DpnII GATC 1 cut(s) 77
EaeI YGGCCR 1 cut(s) 27
EagI CGGCCG 1 cut(s) 27
Eam1104I CTCTTC 2 cut(s) 334, 453
EarI CTCTTC 2 cut(s) 334, 453
EclXI CGGCCG 1 cut(s) 27
Eco130I CCWWGG 1 cut(s) 375
Eco47I GGWCC 2 cut(s) 92, 486
Eco52I CGGCCG 1 cut(s) 27
Eco57I CTGAAG 1 cut(s) 143
EcoRII CCWGG 1 cut(s) 267
EcoT14I CCWWGG 1 cut(s) 375
EgeI GGCGCC 1 cut(s) 163
EheI GGCGCC 1 cut(s) 163
ErhI CCWWGG 1 cut(s) 375
FaeI CATG 5 cut(s) 202, 418, 535, 607, 615
FaiI YATR 7 cut(s) 200, 416, 444, 533, 584, 605, 613
FatI CATG 5 cut(s) 198, 414, 531, 603, 611
Fnu4HI GCNGC 5 cut(s) 27, 165, 190, 528, 595
FokI GGATG 3 cut(s) 303, 495, 553
Fsp4HI GCNGC 5 cut(s) 27, 165, 190, 528, 595
FspBI CTAG 2 cut(s) 23, 524
GlaI GCGC 1 cut(s) 163
GluI GCNGC 5 cut(s) 27, 165, 190, 528, 595
HaeII RGCGCY 1 cut(s) 165
HaeIII GGCC 3 cut(s) 29, 380, 587
HapII CCGG 1 cut(s) 65
HhaI GCGC 1 cut(s) 164
Hin1I GRCGYC 1 cut(s) 162
Hin1II CATG 5 cut(s) 202, 418, 535, 607, 615
Hin6I GCGC 1 cut(s) 162
HinP1I GCGC 1 cut(s) 162
HinfI GANTC 3 cut(s) 13, 208, 553
HpaII CCGG 1 cut(s) 65
HphI GGTGA 2 cut(s) 382, 523
Hpy166II GTNNAC 2 cut(s) 514, 629
Hpy188I TCNGA 5 cut(s) 50, 77, 88, 96, 216
Hpy188III TCNNGA 1 cut(s) 205
Hpy8I GTNNAC 2 cut(s) 514, 629
HpyAV CCTTC 1 cut(s) 391
HpyCH4III ACNGT 2 cut(s) 92, 337
HpyCH4V TGCA 5 cut(s) 238, 316, 499, 506, 607
HpyF10VI GCNNNNNNNGC 3 cut(s) 32, 41, 161
HpyF3I CTNAG 2 cut(s) 40, 140
Hsp92I GRCGYC 1 cut(s) 162
Hsp92II CATG 5 cut(s) 202, 418, 535, 607, 615
HspAI GCGC 1 cut(s) 162
KasI GGCGCC 1 cut(s) 161
Kzo9I GATC 1 cut(s) 77
LpnPI CCDG 9 cut(s) 78, 113, 134, 157, 254, 267, 281, 365, 609
Lsp1109I GCAGC 2 cut(s) 539, 606
LweI GCATC 3 cut(s) 201, 229, 325
MaeI CTAG 2 cut(s) 23, 524
MaeIII GTNAC 1 cut(s) 175
MalI GATC 1 cut(s) 79
MbiI CCGCTC 1 cut(s) 167
MboI GATC 1 cut(s) 77
MboII GAAGA 6 cut(s) 203, 321, 363, 397, 470, 485
MluCI AATT 1 cut(s) 394
Mly113I GGCGCC 1 cut(s) 162
MlyI GAGTC 1 cut(s) 7
MmeI TCCRAC 1 cut(s) 460
MnlI CCTC 3 cut(s) 210, 432, 447
MseI TTAA 1 cut(s) 633
MslI CAYNNNNRTG 3 cut(s) 50, 197, 413
MspI CCGG 1 cut(s) 65
MspR9I CCNGG 1 cut(s) 269
MvaI CCWGG 1 cut(s) 269
MvnI CGCG 1 cut(s) 155
MwoI GCNNNNNNNGC 3 cut(s) 32, 41, 161
NarI GGCGCC 1 cut(s) 162
NdeII GATC 1 cut(s) 77
NlaIII CATG 5 cut(s) 202, 418, 535, 607, 615
NlaIV GGNNCC 1 cut(s) 163
NmeAIII GCCGAG 1 cut(s) 336
NmuCI GTSAC 1 cut(s) 175
PcsI WCGNNNNNNNCGW 2 cut(s) 92, 299
PfeI GAWTC 2 cut(s) 208, 553
PkrI GCNGC 5 cut(s) 28, 166, 191, 529, 596
PleI GAGTC 1 cut(s) 7
PluTI GGCGCC 1 cut(s) 165
PpsI GAGTC 1 cut(s) 7
Psp6I CCWGG 1 cut(s) 267
PspGI CCWGG 1 cut(s) 267
PspN4I GGNNCC 1 cut(s) 163
PspPI GGNCC 2 cut(s) 92, 486
PstI CTGCAG 1 cut(s) 240
RsaI GTAC 2 cut(s) 350, 617
RsaNI GTAC 2 cut(s) 349, 616
RseI CAYNNNNRTG 3 cut(s) 50, 197, 413
Rsr2I CGGWCCG 1 cut(s) 92
RsrII CGGWCCG 1 cut(s) 92
SaqAI TTAA 1 cut(s) 633
SatI GCNGC 5 cut(s) 27, 165, 190, 528, 595
Sau3AI GATC 1 cut(s) 77
Sau96I GGNCC 2 cut(s) 92, 486
SchI GAGTC 1 cut(s) 7
ScrFI CCNGG 1 cut(s) 269
SetI ASST 9 cut(s) 119, 123, 129, 146, 259, 357, 450, 513, 628
SfaNI GCATC 3 cut(s) 201, 229, 325
SfcI CTRYAG 3 cut(s) 236, 336, 638
SfoI GGCGCC 1 cut(s) 163
SinI GGWCC 2 cut(s) 92, 486
SmiMI CAYNNNNRTG 3 cut(s) 50, 197, 413
Sse9I AATT 1 cut(s) 394
SsiI CCGC 4 cut(s) 26, 153, 165, 189
SspDI GGCGCC 1 cut(s) 161
SspI AATATT 1 cut(s) 580
SspMI CTAG 2 cut(s) 23, 524
StyD4I CCNGG 1 cut(s) 267
StyI CCWWGG 1 cut(s) 375
TaaI ACNGT 2 cut(s) 92, 337
TaqI TCGA 1 cut(s) 16
TasI AATT 1 cut(s) 394
TauI GCSGC 3 cut(s) 29, 167, 192
TfiI GAWTC 2 cut(s) 208, 553
Tru1I TTAA 1 cut(s) 633
Tru9I TTAA 1 cut(s) 633
TscAI CASTG 1 cut(s) 340
TseFI GTSAC 1 cut(s) 175
TseI GCWGC 2 cut(s) 527, 594
Tsp45I GTSAC 1 cut(s) 175
TspDTI ATGAA 3 cut(s) 172, 446, 548
TspGWI ACGGA 1 cut(s) 309
TspRI CASTG 1 cut(s) 340
VpaK11BI GGWCC 2 cut(s) 92, 486
XspI CTAG 2 cut(s) 23, 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.