RLG00000000545

Transmembrane protein 205

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0003018
Physical Location & Seq
Reverse (-)
1887038 .. 1888042
1005 bp
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UTR
Exon/CDS
Intron
RLM00000000545

Sequence Viewer

Length: 396 bp
ATGAAGCAGAGGCATAAGGTAGAGAGGGAAGAGAACATTGGGGAAGAAGTTGGATGGTCCAAAAATGTTCAAGTTGCAAAGGTGAACCCGAAACTAGCAGCCATGAATAAGAAGTTTGGGATGATTCACGGGTTATCATCCCTTGCCAATATAATGGCCTTTGGCAGCCTTGCCATGCACTCATGGAGACCAGCAATACAACCCAGAGACGGGTTGTTATACATTGTCATATTCCGGGCTGGGCATTTGAACGAAAGAAAGGGCCTCTTCCAGGTCGAAGCAGCTCCAACTGTTAATAATATTAAAGCTTCTAGTGGGTTTTTGCATATCTTTGTTTTTTGGGATAACTATCATTATAGCCGCCAGAAACGGTCACGGCTTGAATCATGTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4149

Protein Analysis

132

Amino Acids

14.99

Weight (kDa)

10.06

Isoelectric Point (pI)

63.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 361
AfiI CCNNNNNNNGG 3 cut(s) 209, 210, 271
AgsI TTSAA 3 cut(s) 71, 250, 383
AjnI CCWGG 1 cut(s) 270
AjuI GAANNNNNNNTTGG 2 cut(s) 21, 53
AluBI AGCT 2 cut(s) 284, 308
AluI AGCT 2 cut(s) 284, 308
Alw26I GTCTC 2 cut(s) 181, 201
AoxI GGCC 2 cut(s) 156, 262
ApeKI GCWGC 3 cut(s) 98, 165, 281
AspS9I GGNCC 2 cut(s) 57, 262
AsuC2I CCSGG 1 cut(s) 236
AsuHPI GGTGA 1 cut(s) 94
AvaII GGWCC 1 cut(s) 57
BbvI GCAGC 3 cut(s) 110, 177, 293
BccI CCATC 1 cut(s) 48
BceAI ACGGC 1 cut(s) 392
BciT130I CCWGG 1 cut(s) 272
BcnI CCSGG 1 cut(s) 236
BcoDI GTCTC 2 cut(s) 181, 201
BfaI CTAG 2 cut(s) 95, 312
BisI GCNGC 4 cut(s) 99, 166, 282, 361
BlsI GCNGC 4 cut(s) 100, 167, 283, 362
Bme1390I CCNGG 2 cut(s) 236, 272
Bme18I GGWCC 1 cut(s) 57
BmgT120I GGNCC 2 cut(s) 57, 262
BmrFI CCNGG 2 cut(s) 236, 272
BpuMI CCSGG 1 cut(s) 236
BsaBI GATNNNNATC 1 cut(s) 348
BsaI GGTCTC 1 cut(s) 181
Bsc4I CCNNNNNNNGG 3 cut(s) 209, 210, 271
Bse8I GATNNNNATC 1 cut(s) 348
BseBI CCWGG 1 cut(s) 272
BseGI GGATG 3 cut(s) 59, 126, 137
BseJI GATNNNNATC 1 cut(s) 348
BseLI CCNNNNNNNGG 3 cut(s) 209, 210, 271
BseXI GCAGC 3 cut(s) 110, 177, 293
BseYI CCCAGC 1 cut(s) 239
BshFI GGCC 2 cut(s) 158, 264
BsiSI CCGG 1 cut(s) 235
BslI CCNNNNNNNGG 3 cut(s) 209, 210, 271
BsmAI GTCTC 2 cut(s) 181, 201
BsmBI CGTCTC 1 cut(s) 201
BsnI GGCC 2 cut(s) 158, 264
Bso31I GGTCTC 1 cut(s) 181
BspACI CCGC 1 cut(s) 361
BspANI GGCC 2 cut(s) 158, 264
BspTNI GGTCTC 1 cut(s) 181
Bst2UI CCWGG 1 cut(s) 272
Bst4CI ACNGT 2 cut(s) 292, 372
Bst6I CTCTTC 2 cut(s) 24, 272
BstENI CCTNNNNNAGG 1 cut(s) 269
BstF5I GGATG 3 cut(s) 59, 126, 137
BstMAI GTCTC 2 cut(s) 181, 201
BstNI CCWGG 1 cut(s) 272
BstSCI CCNGG 2 cut(s) 234, 270
BstV1I GCAGC 3 cut(s) 110, 177, 293
BstXI CCANNNNNNTGG 1 cut(s) 154
BsuRI GGCC 2 cut(s) 158, 264
BtsCI GGATG 3 cut(s) 59, 126, 137
Cfr13I GGNCC 2 cut(s) 57, 262
CviAII CATG 4 cut(s) 103, 175, 183, 387
CviJI RGCY 9 cut(s) 101, 158, 168, 239, 264, 284, 308, 360, 379
CviKI_1 RGCY 9 cut(s) 101, 158, 168, 239, 264, 284, 308, 360, 379
Eam1104I CTCTTC 2 cut(s) 24, 272
EarI CTCTTC 2 cut(s) 24, 272
Eco31I GGTCTC 1 cut(s) 181
Eco47I GGWCC 1 cut(s) 57
EcoNI CCTNNNNNAGG 1 cut(s) 269
EcoO109I RGGNCCY 1 cut(s) 262
EcoRII CCWGG 1 cut(s) 270
Esp3I CGTCTC 1 cut(s) 201
FaeI CATG 4 cut(s) 106, 178, 186, 390
FalI AAGNNNNNCTT 2 cut(s) 251, 283
FatI CATG 4 cut(s) 102, 174, 182, 386
Fnu4HI GCNGC 4 cut(s) 99, 166, 282, 361
FokI GGATG 3 cut(s) 66, 124, 133
Fsp4HI GCNGC 4 cut(s) 99, 166, 282, 361
FspBI CTAG 2 cut(s) 95, 312
GluI GCNGC 4 cut(s) 99, 166, 282, 361
GsaI CCCAGC 1 cut(s) 243
HaeIII GGCC 2 cut(s) 158, 264
HapII CCGG 1 cut(s) 235
Hin1II CATG 4 cut(s) 106, 178, 186, 390
HindIII AAGCTT 1 cut(s) 306
HinfI GANTC 2 cut(s) 124, 383
HpaII CCGG 1 cut(s) 235
HphI GGTGA 1 cut(s) 94
Hpy166II GTNNAC 1 cut(s) 85
Hpy8I GTNNAC 1 cut(s) 85
HpyCH4III ACNGT 2 cut(s) 292, 372
HpyCH4V TGCA 3 cut(s) 77, 178, 325
Hsp92II CATG 4 cut(s) 106, 178, 186, 390
LmnI GCTCC 1 cut(s) 289
LpnPI CCDG 7 cut(s) 204, 217, 225, 248, 257, 284, 377
Lsp1109I GCAGC 3 cut(s) 110, 177, 293
MaeI CTAG 2 cut(s) 95, 312
MaeIII GTNAC 1 cut(s) 372
MboII GAAGA 3 cut(s) 41, 56, 259
MmeI TCCRAC 2 cut(s) 31, 311
MnlI CCTC 3 cut(s) 3, 18, 275
MseI TTAA 2 cut(s) 294, 303
MspI CCGG 1 cut(s) 235
MspR9I CCNGG 2 cut(s) 236, 272
MvaI CCWGG 1 cut(s) 272
NciI CCSGG 1 cut(s) 236
NlaIII CATG 4 cut(s) 106, 178, 186, 390
NmuCI GTSAC 1 cut(s) 372
PfeI GAWTC 2 cut(s) 124, 383
PkrI GCNGC 4 cut(s) 100, 167, 283, 362
Psp6I CCWGG 1 cut(s) 270
PspFI CCCAGC 1 cut(s) 239
PspGI CCWGG 1 cut(s) 270
PspPI GGNCC 2 cut(s) 57, 262
SaqAI TTAA 2 cut(s) 294, 303
SatI GCNGC 4 cut(s) 99, 166, 282, 361
Sau96I GGNCC 2 cut(s) 57, 262
ScrFI CCNGG 2 cut(s) 236, 272
SetI ASST 5 cut(s) 21, 84, 276, 286, 310
SinI GGWCC 1 cut(s) 57
SsiI CCGC 1 cut(s) 361
SspI AATATT 1 cut(s) 301
SspMI CTAG 2 cut(s) 95, 312
StyD4I CCNGG 2 cut(s) 234, 270
TaaI ACNGT 2 cut(s) 292, 372
TaqI TCGA 1 cut(s) 276
TauI GCSGC 1 cut(s) 363
TfiI GAWTC 2 cut(s) 124, 383
Tru1I TTAA 2 cut(s) 294, 303
Tru9I TTAA 2 cut(s) 294, 303
TseFI GTSAC 1 cut(s) 372
TseI GCWGC 3 cut(s) 98, 165, 281
Tsp45I GTSAC 1 cut(s) 372
TspDTI ATGAA 2 cut(s) 17, 119
VpaK11BI GGWCC 1 cut(s) 57
XagI CCTNNNNNAGG 1 cut(s) 269
XspI CTAG 2 cut(s) 95, 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.