Rmu_sc0035295.1_g000002

Transmembrane protein 205

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0035295.1
OG0003018
Physical Location & Seq
Reverse (-)
2420 .. 2891
472 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0035295.1_g000002.1.cds

Sequence Viewer

Length: 402 bp
atgggttttctagccatcagagtgattttctcacaggagaccaaatcggacggtcccaagtcgtcagcactctccaccaccctgaagctggctcatttgctcaacttcttcacggcgtttggcgcctgtctcaaggtcaccttcctcggtgacaccatcatgttcaagactcttctgaggcatcagctctgtaatctgcaaagcaagatgcttccatcttatttcacaatggtggggatttgttgtgcaatatcagtagctttatttggccttcaatctcaccaactgttcatcttcacacccatgactattgagatgatgaagcagaggcataaggtagagaggaaacggaacattgtggaagaattgggctggtccaaaaatgaggaagatgatatatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4149

Protein Analysis

133

Amino Acids

15.12

Weight (kDa)

9.0

Isoelectric Point (pI)

50.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 122
AcuI CTGAAG 1 cut(s) 104
AcyI GRCGYC 1 cut(s) 123
AfiI CCNNNNNNNGG 1 cut(s) 88
AgsI TTSAA 2 cut(s) 166, 275
AleI CACNNNNGTG 1 cut(s) 230
AluBI AGCT 3 cut(s) 88, 187, 260
AluI AGCT 3 cut(s) 88, 187, 260
Alw26I GTCTC 2 cut(s) 32, 134
AoxI GGCC 1 cut(s) 268
AspLEI GCGC 1 cut(s) 125
AspS9I GGNCC 2 cut(s) 53, 375
AsuHPI GGTGA 3 cut(s) 130, 161, 272
AvaII GGWCC 2 cut(s) 53, 375
BanI GGYRCC 1 cut(s) 122
BccI CCATC 3 cut(s) 23, 164, 223
BceAI ACGGC 1 cut(s) 129
BcoDI GTCTC 2 cut(s) 32, 134
BfaI CTAG 1 cut(s) 11
BfoI RGCGCY 1 cut(s) 126
Bme18I GGWCC 2 cut(s) 53, 375
BmgT120I GGNCC 2 cut(s) 53, 375
BmiI GGNNCC 2 cut(s) 55, 124
BmsI GCATC 2 cut(s) 190, 198
BpuEI CTTGAG 1 cut(s) 116
BsaHI GRCGYC 1 cut(s) 123
BsaI GGTCTC 1 cut(s) 32
BsaJI CCNNGG 1 cut(s) 145
Bsc4I CCNNNNNNNGG 1 cut(s) 88
BseDI CCNNGG 1 cut(s) 145
BseLI CCNNNNNNNGG 1 cut(s) 88
BseMII CTCAG 1 cut(s) 167
BshFI GGCC 1 cut(s) 270
BshNI GGYRCC 1 cut(s) 122
BslFI GGGAC 1 cut(s) 39
BslI CCNNNNNNNGG 1 cut(s) 88
BsmAI GTCTC 2 cut(s) 32, 134
BsmFI GGGAC 1 cut(s) 39
BsnI GGCC 1 cut(s) 270
Bso31I GGTCTC 1 cut(s) 32
BspANI GGCC 1 cut(s) 270
BspCNI CTCAG 1 cut(s) 168
BspLI GGNNCC 2 cut(s) 55, 124
BspT107I GGYRCC 1 cut(s) 122
BspTNI GGTCTC 1 cut(s) 32
BssECI CCNNGG 1 cut(s) 145
BssNI GRCGYC 1 cut(s) 123
Bst4CI ACNGT 2 cut(s) 53, 288
Bst6I CTCTTC 1 cut(s) 177
BstACI GRCGYC 1 cut(s) 123
BstC8I GCNNGC 1 cut(s) 90
BstDEI CTNAG 1 cut(s) 176
BstEII GGTNACC 1 cut(s) 136
BstH2I RGCGCY 1 cut(s) 126
BstHHI GCGC 1 cut(s) 125
BstMAI GTCTC 2 cut(s) 32, 134
BstMWI GCNNNNNNNGC 1 cut(s) 122
BstPI GGTNACC 1 cut(s) 136
BsuRI GGCC 1 cut(s) 270
Cac8I GCNNGC 1 cut(s) 90
CfoI GCGC 1 cut(s) 125
Cfr13I GGNCC 2 cut(s) 53, 375
CviAII CATG 2 cut(s) 160, 304
CviJI RGCY 7 cut(s) 14, 88, 92, 187, 260, 270, 372
CviKI_1 RGCY 7 cut(s) 14, 88, 92, 187, 260, 270, 372
DdeI CTNAG 1 cut(s) 176
DinI GGCGCC 1 cut(s) 124
Eam1104I CTCTTC 1 cut(s) 177
EarI CTCTTC 1 cut(s) 177
Eco31I GGTCTC 1 cut(s) 32
Eco47I GGWCC 2 cut(s) 53, 375
Eco57I CTGAAG 1 cut(s) 104
Eco91I GGTNACC 1 cut(s) 136
EcoO65I GGTNACC 1 cut(s) 136
EgeI GGCGCC 1 cut(s) 124
EheI GGCGCC 1 cut(s) 124
FaeI CATG 2 cut(s) 163, 307
FaiI YATR 5 cut(s) 161, 305, 333, 398, 400
FalI AAGNNNNNCTT 2 cut(s) 125, 157
FaqI GGGAC 1 cut(s) 39
FatI CATG 2 cut(s) 159, 303
FspBI CTAG 1 cut(s) 11
GlaI GCGC 1 cut(s) 124
HaeII RGCGCY 1 cut(s) 126
HaeIII GGCC 1 cut(s) 270
HhaI GCGC 1 cut(s) 125
Hin1I GRCGYC 1 cut(s) 123
Hin1II CATG 2 cut(s) 163, 307
Hin6I GCGC 1 cut(s) 123
HinP1I GCGC 1 cut(s) 123
HinfI GANTC 1 cut(s) 169
HphI GGTGA 3 cut(s) 130, 161, 272
Hpy188I TCNGA 3 cut(s) 20, 49, 177
Hpy188III TCNNGA 1 cut(s) 166
HpyAV CCTTC 2 cut(s) 151, 281
HpyCH4III ACNGT 2 cut(s) 53, 288
HpyCH4V TGCA 2 cut(s) 199, 248
HpyF10VI GCNNNNNNNGC 1 cut(s) 122
HpyF3I CTNAG 1 cut(s) 176
Hsp92I GRCGYC 1 cut(s) 123
Hsp92II CATG 2 cut(s) 163, 307
HspAI GCGC 1 cut(s) 123
KasI GGCGCC 1 cut(s) 122
LpnPI CCDG 5 cut(s) 20, 74, 95, 139, 358
LweI GCATC 2 cut(s) 190, 198
MaeI CTAG 1 cut(s) 11
MaeIII GTNAC 2 cut(s) 136, 149
MboII GAAGA 5 cut(s) 100, 164, 286, 374, 401
MluCI AATT 1 cut(s) 365
Mly113I GGCGCC 1 cut(s) 123
MlyI GAGTC 1 cut(s) 163
MnlI CCTC 5 cut(s) 155, 171, 321, 336, 379
MslI CAYNNNNRTG 4 cut(s) 20, 158, 230, 302
MwoI GCNNNNNNNGC 1 cut(s) 122
NarI GGCGCC 1 cut(s) 123
NlaIII CATG 2 cut(s) 163, 307
NlaIV GGNNCC 2 cut(s) 55, 124
NmuCI GTSAC 2 cut(s) 136, 149
OliI CACNNNNGTG 1 cut(s) 230
PleI GAGTC 1 cut(s) 163
PluTI GGCGCC 1 cut(s) 126
PpsI GAGTC 1 cut(s) 163
PspEI GGTNACC 1 cut(s) 136
PspN4I GGNNCC 2 cut(s) 55, 124
PspPI GGNCC 2 cut(s) 53, 375
RseI CAYNNNNRTG 4 cut(s) 20, 158, 230, 302
Sau96I GGNCC 2 cut(s) 53, 375
SchI GAGTC 1 cut(s) 163
SetI ASST 6 cut(s) 90, 138, 143, 189, 262, 339
SfaNI GCATC 2 cut(s) 190, 198
SfoI GGCGCC 1 cut(s) 124
SinI GGWCC 2 cut(s) 53, 375
SmiMI CAYNNNNRTG 4 cut(s) 20, 158, 230, 302
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
Sse9I AATT 1 cut(s) 365
SspDI GGCGCC 1 cut(s) 122
SspMI CTAG 1 cut(s) 11
TaaI ACNGT 2 cut(s) 53, 288
TasI AATT 1 cut(s) 365
TseFI GTSAC 2 cut(s) 136, 149
Tsp45I GTSAC 2 cut(s) 136, 149
TspDTI ATGAA 2 cut(s) 280, 335
TspGWI ACGGA 1 cut(s) 364
VpaK11BI GGWCC 2 cut(s) 53, 375
XcmI CCANNNNNNNNNTGG 1 cut(s) 85
XspI CTAG 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.