Rh7DG403100

protein trichome birefringence-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0003018
Physical Location & Seq
Forward (+)
55565543 .. 55576933
11391 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG403100.1

Sequence Viewer

Length: 426 bp
ATGAAGAGATCAATGGAAACTTTGATTGATTGGATTGATAGTGAAGTCAACATGAGCAAGACTTATGTACATTTTGGAACTTATGCTCCTGTACATTTCAGGTTTGCTCTATCATTTAAGTTGCTTAGTCTCATTGGCTCTGTTATAGTTGGTCAGTGGCAGGCCACAGAACACAGAAAATGTAACGAAAAGTCAGTCCCTTGGAAAGGCGAGAAGCCCATGAGTTTTGCGCTCTTCGCCACTGCTCAACAAGCTATTGCTACCAAAGACATTCTTCAAATGATGAAGCAGAGGCATAAGATCAAGAGGGAACAGAACATTGGGGAAGAAGTTGGATGGTCCAAAAATGTGAAAGTTGCAGAGGACACGAATTATGGAATTCAGTTTCATAATGTTCTTCACCAACAATCCGAAGTTGGACCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC-Esterase PMR5N

Protein Analysis

141

Amino Acids

16.24

Weight (kDa)

9.24

Isoelectric Point (pI)

44.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 378
AfaI GTAC 2 cut(s) 69, 93
AfiI CCNNNNNNNGG 1 cut(s) 206
AgsI TTSAA 1 cut(s) 278
AjuI GAANNNNNNNTTGG 2 cut(s) 303, 335
AloI GAACNNNNNNTCC 2 cut(s) 70, 102
AluBI AGCT 1 cut(s) 254
AluI AGCT 1 cut(s) 254
Alw26I GTCTC 1 cut(s) 134
AoxI GGCC 1 cut(s) 162
ApoI RAATTY 1 cut(s) 378
ArsI GACNNNNNNTTYG 2 cut(s) 180, 212
AspLEI GCGC 1 cut(s) 232
AspS9I GGNCC 2 cut(s) 339, 419
AsuHPI GGTGA 1 cut(s) 392
AvaII GGWCC 2 cut(s) 339, 419
BccI CCATC 1 cut(s) 330
BcoDI GTCTC 1 cut(s) 134
Bme18I GGWCC 2 cut(s) 339, 419
BmgT120I GGNCC 2 cut(s) 339, 419
BsaJI CCNNGG 1 cut(s) 200
BsaXI ACNNNNNCTCC 2 cut(s) 70, 100
Bsc4I CCNNNNNNNGG 1 cut(s) 206
BseDI CCNNGG 1 cut(s) 200
BseGI GGATG 1 cut(s) 341
BseLI CCNNNNNNNGG 1 cut(s) 206
BshFI GGCC 1 cut(s) 164
BslFI GGGAC 1 cut(s) 182
BslI CCNNNNNNNGG 1 cut(s) 206
BsmAI GTCTC 1 cut(s) 134
BsmFI GGGAC 1 cut(s) 182
BsnI GGCC 1 cut(s) 164
Bsp1407I TGTACA 2 cut(s) 67, 91
Bsp143I GATC 2 cut(s) 8, 300
BspANI GGCC 1 cut(s) 164
BspQI GCTCTTC 1 cut(s) 239
BsrGI TGTACA 2 cut(s) 67, 91
BssECI CCNNGG 1 cut(s) 200
BssMI GATC 2 cut(s) 8, 300
BssT1I CCWWGG 1 cut(s) 200
Bst6I CTCTTC 1 cut(s) 239
BstAUI TGTACA 2 cut(s) 67, 91
BstC8I GCNNGC 1 cut(s) 162
BstDEI CTNAG 1 cut(s) 125
BstENI CCTNNNNNAGG 1 cut(s) 204
BstF5I GGATG 1 cut(s) 341
BstHHI GCGC 1 cut(s) 232
BstKTI GATC 2 cut(s) 11, 303
BstMAI GTCTC 1 cut(s) 134
BstMBI GATC 2 cut(s) 8, 300
BstMWI GCNNNNNNNGC 2 cut(s) 236, 251
BsuRI GGCC 1 cut(s) 164
BtsCI GGATG 1 cut(s) 341
BtsI GCAGTG 1 cut(s) 240
BtsIMutI CAGTG 2 cut(s) 161, 240
Cac8I GCNNGC 1 cut(s) 162
CfoI GCGC 1 cut(s) 232
Cfr13I GGNCC 2 cut(s) 339, 419
Csp6I GTAC 2 cut(s) 68, 92
CviAII CATG 2 cut(s) 52, 220
CviJI RGCY 4 cut(s) 138, 164, 217, 254
CviKI_1 RGCY 4 cut(s) 138, 164, 217, 254
CviQI GTAC 2 cut(s) 68, 92
DdeI CTNAG 1 cut(s) 125
DpnI GATC 2 cut(s) 10, 302
DpnII GATC 2 cut(s) 8, 300
Eam1104I CTCTTC 1 cut(s) 239
EarI CTCTTC 1 cut(s) 239
Eco130I CCWWGG 1 cut(s) 200
Eco47I GGWCC 2 cut(s) 339, 419
EcoNI CCTNNNNNAGG 1 cut(s) 204
EcoRI GAATTC 1 cut(s) 378
EcoT14I CCWWGG 1 cut(s) 200
ErhI CCWWGG 1 cut(s) 200
FaeI CATG 2 cut(s) 55, 223
FaiI YATR 9 cut(s) 53, 66, 84, 146, 221, 297, 375, 390, 424
FalI AAGNNNNNCTT 2 cut(s) 258, 290
FaqI GGGAC 1 cut(s) 182
FatI CATG 2 cut(s) 51, 219
FokI GGATG 1 cut(s) 348
GlaI GCGC 1 cut(s) 231
HaeIII GGCC 1 cut(s) 164
HhaI GCGC 1 cut(s) 232
Hin1II CATG 2 cut(s) 55, 223
Hin6I GCGC 1 cut(s) 230
HinP1I GCGC 1 cut(s) 230
HincII GTYRAC 1 cut(s) 49
HindII GTYRAC 1 cut(s) 49
HphI GGTGA 1 cut(s) 392
Hpy166II GTNNAC 1 cut(s) 49
Hpy188I TCNGA 1 cut(s) 412
Hpy188III TCNNGA 1 cut(s) 304
Hpy8I GTNNAC 1 cut(s) 49
HpyCH4V TGCA 1 cut(s) 359
HpyF10VI GCNNNNNNNGC 2 cut(s) 236, 251
HpyF3I CTNAG 1 cut(s) 125
Hsp92II CATG 2 cut(s) 55, 223
HspAI GCGC 1 cut(s) 230
Kzo9I GATC 2 cut(s) 8, 300
LguI GCTCTTC 1 cut(s) 239
LmnI GCTCC 1 cut(s) 91
LpnPI CCDG 3 cut(s) 85, 102, 146
MaeIII GTNAC 1 cut(s) 182
MalI GATC 2 cut(s) 10, 302
MboI GATC 2 cut(s) 8, 300
MboII GAAGA 5 cut(s) 16, 226, 266, 338, 389
MluCI AATT 2 cut(s) 370, 378
MmeI TCCRAC 2 cut(s) 313, 397
MnlI CCTC 3 cut(s) 285, 300, 355
MseI TTAA 1 cut(s) 117
MwoI GCNNNNNNNGC 2 cut(s) 236, 251
NdeII GATC 2 cut(s) 8, 300
NlaIII CATG 2 cut(s) 55, 223
PciSI GCTCTTC 1 cut(s) 239
PspPI GGNCC 2 cut(s) 339, 419
RsaI GTAC 2 cut(s) 69, 93
RsaNI GTAC 2 cut(s) 68, 92
SapI GCTCTTC 1 cut(s) 239
SaqAI TTAA 1 cut(s) 117
Sau3AI GATC 2 cut(s) 8, 300
Sau96I GGNCC 2 cut(s) 339, 419
SetI ASST 2 cut(s) 104, 256
SinI GGWCC 2 cut(s) 339, 419
Sse9I AATT 2 cut(s) 370, 378
StyI CCWWGG 1 cut(s) 200
TasI AATT 2 cut(s) 370, 378
TatI WGTACW 2 cut(s) 67, 91
Tru1I TTAA 1 cut(s) 117
Tru9I TTAA 1 cut(s) 117
TscAI CASTG 2 cut(s) 161, 247
TspDTI ATGAA 3 cut(s) 17, 299, 377
TspRI CASTG 2 cut(s) 161, 247
VpaK11BI GGWCC 2 cut(s) 339, 419
XagI CCTNNNNNAGG 1 cut(s) 204
XapI RAATTY 1 cut(s) 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.