Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003018

Physical Location & Seq

Genomic Coordinates Reverse (-)

22440258 .. 22442446

Gene Structure 2189 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G270400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGCTTGGTTGACTCGATTCCTAGCAGCCGTGGCTTTCTTAGCCATCGGAGTGATTTTCTCCCCGGAGACCTTTGGATCCAAATCGGATGGTCTGAATTCACCAACCCTCTCCACCTACCTAAAACTGGCCCATCTCCTCACCTTCTCCACCGCTTTCGGTGCGGCTCTCTGGGTTACCTTCATCGGCGGCATCATCATGTTCAAGAATCTTCCGAGGCATCAGTTTGGCAATCTTCAAAGCAAGATGTTTCCAGCGTATTTCTCAATGGTGGGGATCTGCTGTGCAGTATCAGTAGCCTCGTTTGGGTATTTGCATCCCTGGAACTCTTCTTCTGTTGCTGAGAAGTACCAGCTCGGCTTTTTGCTCTCTTCCTTGGCCTTCAATCTCACCAATTTGTTTGTCTTCACACCCATGACCGTCGAGATGATGAAGCAAAGGCATAAGGTGGAGAGGGAACAGAACATTGGGGAAGAAGTTGGATGGTCGAAAAATGTGCAAGTGGCAAAGGTAAACCCAAAACTAGCAGCCATGAATAAGAAATTTGGGATGATTCATGGGTTATCATCTCTAGCCAACATCATGGCCTTTGGCAGCCTTGCTATGCACTCATGGTACTTGGCTAGTAAACTTAATCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4149

Protein Analysis

214

Amino Acids

23.55

Weight (kDa)

9.73

Isoelectric Point (pI)

36.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62580
fragaria_vesca	FvH4_5g39460 FvH4_5g39460
malus_domestica	MD03G1296800.v1.1 MD04G1089900.v1.1 MD11G1316400.v1.1 MD17G1137100.v1.1
prunus_persica	Prupe.8G270400_v2.0.a1
pyrus_communis	pycom03g23530 pycom11g27610
rosa_chinensis	RchiOBHm_Chr3g0460601 RchiOBHm_Chr4g0442591 RchiOBHm_Chr5g0039051 RchiOBHm_Chr6g0294301 RchiOBHm_Chr7g0189431 RchiOBHm_Chr7g0229621 RchiOBHm_Chr7g0230001 RchiOBHm_Chr7g0230901 RchiOBHm_Chr7g0241771
rosa_laevigata	RLG00000000545
rosa_multiflora	Rmu_sc0000851.1_g000004 Rmu_sc0010095.1_g000003 Rmu_sc0035295.1_g000002
rosa_roxburghii	Rroxscaffold_3G00218680 Rroxscaffold_7G00215870
rosa_rugosa	Rorug06G0497700 Rorug07G0347100
rosa_samantha	Rh2AG433100 Rh5DG465500 Rh7AG501600 Rh7BG472900 Rh7CG517900 Rh7DG104700 Rh7DG403100 Rh7DG486700
rosa_wichuraiana	Rw5G049000 Rw7G033970 Rw7G042400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	153, 164, 189
AclWI	GGATC	3 cut(s)	72, 85, 284
AcsI	RAATTY	2 cut(s)	97, 542
AfaI	GTAC	2 cut(s)	350, 617
AfiI	CCNNNNNNNGG	2 cut(s)	127, 306
AgsI	TTSAA	3 cut(s)	205, 239, 385
AjnI	CCWGG	1 cut(s)	320
AjuI	GAANNNNNNNTTGG	2 cut(s)	450, 482
AluBI	AGCT	1 cut(s)	355
AluI	AGCT	1 cut(s)	355
Alw26I	GTCTC	1 cut(s)	62
AlwI	GGATC	3 cut(s)	72, 85, 284
AoxI	GGCC	3 cut(s)	129, 378, 585
ApeKI	GCWGC	3 cut(s)	26, 527, 594
ApoI	RAATTY	2 cut(s)	97, 542
AspS9I	GGNCC	1 cut(s)	130
AsuC2I	CCSGG	1 cut(s)	65
AsuHPI	GGTGA	3 cut(s)	93, 133, 382
BamHI	GGATCC	1 cut(s)	77
BbsI	GAAGAC	1 cut(s)	397
BbvI	GCAGC	3 cut(s)	38, 539, 606
BccI	CCATC	4 cut(s)	53, 83, 141, 477
BceAI	ACGGC	1 cut(s)	14
BcgI	CGANNNNNNTGC	2 cut(s)	478, 512
BciT130I	CCWGG	1 cut(s)	322
BcnI	CCSGG	1 cut(s)	65
BcoDI	GTCTC	1 cut(s)	62
BfaI	CTAG	4 cut(s)	23, 524, 572, 624
BisI	GCNGC	5 cut(s)	27, 165, 190, 528, 595
BlsI	GCNGC	5 cut(s)	28, 166, 191, 529, 596
Bme1390I	CCNGG	2 cut(s)	65, 322
BmgT120I	GGNCC	1 cut(s)	130
BmiI	GGNNCC	1 cut(s)	79
BmrFI	CCNGG	2 cut(s)	65, 322
BmsI	GCATC	3 cut(s)	201, 229, 325
BpiI	GAAGAC	1 cut(s)	397
BpuMI	CCSGG	1 cut(s)	65
BsaBI	GATNNNNATC	1 cut(s)	82
BsaI	GGTCTC	1 cut(s)	62
BsaJI	CCNNGG	5 cut(s)	30, 63, 215, 320, 375
Bsc4I	CCNNNNNNNGG	2 cut(s)	127, 306
Bse1I	ACTGG	1 cut(s)	132
Bse8I	GATNNNNATC	1 cut(s)	82
BseBI	CCWGG	1 cut(s)	322
BseDI	CCNNGG	5 cut(s)	30, 63, 215, 320, 375
BseGI	GGATG	4 cut(s)	94, 316, 488, 555
BseJI	GATNNNNATC	1 cut(s)	82
BseLI	CCNNNNNNNGG	2 cut(s)	127, 306
BseMII	CTCAG	1 cut(s)	333
BseNI	ACTGG	1 cut(s)	132
BseRI	GAGGAG	1 cut(s)	128
BseXI	GCAGC	3 cut(s)	38, 539, 606
BsgI	GTGCAG	1 cut(s)	306
BshFI	GGCC	3 cut(s)	131, 380, 587
BsiSI	CCGG	1 cut(s)	65
BslI	CCNNNNNNNGG	2 cut(s)	127, 306
BsmAI	GTCTC	1 cut(s)	62
BsnI	GGCC	3 cut(s)	131, 380, 587
Bso31I	GGTCTC	1 cut(s)	62
Bsp143I	GATC	2 cut(s)	77, 276
BspACI	CCGC	3 cut(s)	153, 164, 189
BspANI	GGCC	3 cut(s)	131, 380, 587
BspCNI	CTCAG	1 cut(s)	334
BspLI	GGNNCC	1 cut(s)	79
BspPI	GGATC	3 cut(s)	72, 85, 284
BspTNI	GGTCTC	1 cut(s)	62
BsrI	ACTGG	1 cut(s)	132
BssECI	CCNNGG	5 cut(s)	30, 63, 215, 320, 375
BssMI	GATC	2 cut(s)	77, 276
BssT1I	CCWWGG	1 cut(s)	375
Bst2UI	CCWGG	1 cut(s)	322
Bst4CI	ACNGT	1 cut(s)	421
Bst6I	CTCTTC	2 cut(s)	334, 376
BstDEI	CTNAG	2 cut(s)	40, 342
BstDSI	CCRYGG	1 cut(s)	30
BstEII	GGTNACC	1 cut(s)	175
BstF5I	GGATG	4 cut(s)	94, 316, 488, 555
BstKTI	GATC	2 cut(s)	80, 279
BstMAI	GTCTC	1 cut(s)	62
BstMBI	GATC	2 cut(s)	77, 276
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 41, 161
BstNI	CCWGG	1 cut(s)	322
BstPI	GGTNACC	1 cut(s)	175
BstSCI	CCNGG	2 cut(s)	63, 320
BstV1I	GCAGC	3 cut(s)	38, 539, 606
BstV2I	GAAGAC	1 cut(s)	397
BstX2I	RGATCY	2 cut(s)	77, 276
BstXI	CCANNNNNNTGG	1 cut(s)	583
BstYI	RGATCY	2 cut(s)	77, 276
BsuRI	GGCC	3 cut(s)	131, 380, 587
BtgI	CCRYGG	1 cut(s)	30
BtsCI	GGATG	4 cut(s)	94, 316, 488, 555
Cfr13I	GGNCC	1 cut(s)	130
Csp6I	GTAC	2 cut(s)	349, 616
CviAII	CATG	6 cut(s)	199, 415, 532, 557, 583, 612
CviQI	GTAC	2 cut(s)	349, 616
DdeI	CTNAG	2 cut(s)	40, 342
DpnI	GATC	2 cut(s)	79, 278
DpnII	GATC	2 cut(s)	77, 276
Eam1104I	CTCTTC	2 cut(s)	334, 376
EarI	CTCTTC	2 cut(s)	334, 376
Eco130I	CCWWGG	1 cut(s)	375
Eco31I	GGTCTC	1 cut(s)	62
Eco91I	GGTNACC	1 cut(s)	175
EcoO65I	GGTNACC	1 cut(s)	175
EcoRI	GAATTC	1 cut(s)	97
EcoRII	CCWGG	1 cut(s)	320
EcoT14I	CCWWGG	1 cut(s)	375
ErhI	CCWWGG	1 cut(s)	375
FaeI	CATG	6 cut(s)	202, 418, 535, 560, 586, 615
FaiI	YATR	8 cut(s)	200, 416, 444, 533, 558, 584, 605, 613
FatI	CATG	6 cut(s)	198, 414, 531, 556, 582, 611
Fnu4HI	GCNGC	5 cut(s)	27, 165, 190, 528, 595
FokI	GGATG	4 cut(s)	101, 303, 495, 562
Fsp4HI	GCNGC	5 cut(s)	27, 165, 190, 528, 595
FspBI	CTAG	4 cut(s)	23, 524, 572, 624
GluI	GCNGC	5 cut(s)	27, 165, 190, 528, 595
HaeIII	GGCC	3 cut(s)	131, 380, 587
HapII	CCGG	1 cut(s)	65
Hin1II	CATG	6 cut(s)	202, 418, 535, 560, 586, 615
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HinfI	GANTC	4 cut(s)	13, 18, 208, 553
HpaII	CCGG	1 cut(s)	65
HphI	GGTGA	3 cut(s)	93, 133, 382
Hpy166II	GTNNAC	3 cut(s)	12, 514, 629
Hpy188I	TCNGA	4 cut(s)	50, 88, 96, 216
Hpy188III	TCNNGA	2 cut(s)	205, 424
Hpy8I	GTNNAC	3 cut(s)	12, 514, 629
Hpy99I	CGWCG	1 cut(s)	425
HpyAV	CCTTC	3 cut(s)	154, 190, 391
HpyCH4III	ACNGT	1 cut(s)	421
HpyCH4V	TGCA	4 cut(s)	287, 316, 499, 607
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 41, 161
HpyF3I	CTNAG	2 cut(s)	40, 342
Hsp92II	CATG	6 cut(s)	202, 418, 535, 560, 586, 615
Kzo9I	GATC	2 cut(s)	77, 276
LpnPI	CCDG	7 cut(s)	78, 113, 157, 267, 307, 334, 365
Lsp1109I	GCAGC	3 cut(s)	38, 539, 606
LweI	GCATC	3 cut(s)	201, 229, 325
MaeI	CTAG	4 cut(s)	23, 524, 572, 624
MaeIII	GTNAC	1 cut(s)	175
MalI	GATC	2 cut(s)	79, 278
MboI	GATC	2 cut(s)	77, 276
MboII	GAAGA	7 cut(s)	203, 227, 321, 324, 363, 397, 485
MflI	RGATCY	2 cut(s)	77, 276
MluCI	AATT	3 cut(s)	97, 394, 542
MlyI	GAGTC	1 cut(s)	7
MmeI	TCCRAC	1 cut(s)	460
MnlI	CCTC	5 cut(s)	119, 149, 210, 310, 447
MseI	TTAA	1 cut(s)	633
MslI	CAYNNNNRTG	3 cut(s)	50, 197, 413
MspI	CCGG	1 cut(s)	65
MspR9I	CCNGG	2 cut(s)	65, 322
MvaI	CCWGG	1 cut(s)	322
MwoI	GCNNNNNNNGC	3 cut(s)	32, 41, 161
NciI	CCSGG	1 cut(s)	65
NdeII	GATC	2 cut(s)	77, 276
NlaIII	CATG	6 cut(s)	202, 418, 535, 560, 586, 615
NlaIV	GGNNCC	1 cut(s)	79
NmeAIII	GCCGAG	1 cut(s)	336
PfeI	GAWTC	3 cut(s)	18, 208, 553
PkrI	GCNGC	5 cut(s)	28, 166, 191, 529, 596
PleI	GAGTC	1 cut(s)	7
PpsI	GAGTC	1 cut(s)	7
Psp6I	CCWGG	1 cut(s)	320
PspEI	GGTNACC	1 cut(s)	175
PspGI	CCWGG	1 cut(s)	320
PspN4I	GGNNCC	1 cut(s)	79
PspPI	GGNCC	1 cut(s)	130
PsuI	RGATCY	2 cut(s)	77, 276
RsaI	GTAC	2 cut(s)	350, 617
RsaNI	GTAC	2 cut(s)	349, 616
RseI	CAYNNNNRTG	3 cut(s)	50, 197, 413
SaqAI	TTAA	1 cut(s)	633
SatI	GCNGC	5 cut(s)	27, 165, 190, 528, 595
Sau3AI	GATC	2 cut(s)	77, 276
Sau96I	GGNCC	1 cut(s)	130
SchI	GAGTC	1 cut(s)	7
ScrFI	CCNGG	2 cut(s)	65, 322
SetI	ASST	8 cut(s)	74, 119, 123, 146, 182, 357, 450, 513
SfaNI	GCATC	3 cut(s)	201, 229, 325
SmiMI	CAYNNNNRTG	3 cut(s)	50, 197, 413
Sse9I	AATT	3 cut(s)	97, 394, 542
SsiI	CCGC	3 cut(s)	153, 164, 189
SspMI	CTAG	4 cut(s)	23, 524, 572, 624
StyD4I	CCNGG	2 cut(s)	63, 320
StyI	CCWWGG	1 cut(s)	375
TaaI	ACNGT	1 cut(s)	421
TaqI	TCGA	3 cut(s)	16, 423, 488
TasI	AATT	3 cut(s)	97, 394, 542
TauI	GCSGC	2 cut(s)	167, 192
TfiI	GAWTC	3 cut(s)	18, 208, 553
Tru1I	TTAA	1 cut(s)	633
Tru9I	TTAA	1 cut(s)	633
TseI	GCWGC	3 cut(s)	26, 527, 594
TspDTI	ATGAA	4 cut(s)	172, 446, 545, 548
XapI	RAATTY	2 cut(s)	97, 542
XspI	CTAG	4 cut(s)	23, 524, 572, 624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.