Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0003018

Physical Location & Seq

Genomic Coordinates Forward (+)

29825341 .. 29826320

Gene Structure 980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g27610.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGCTTGGTTGACGCGATTCCTAGCAGCCGTGGCTTTCTTGGCCATCGGAGTGATATTCTCCCCGGAGACCTTTGGATCGAAATCGGACGGTCTGAAATCGCCCACCCTCTCCACCTACCTAAAGCTGGCTCATCTGCTCTGCTTCTCCACCGCATTCGGCGCCGCTCTCTGGGTCACTTTCATCGGCGGCATCATCATGTTCAAGAATCTTCCGCGGCATCAGTTCGGGAATCTTCAGAGCAAGATGTTTCCGGCTTATTTCACCATGGTTGGGATATGCCTCGCAGTATCAGCTGGGTCGTTTGGGTATTTGCATCCGTGGAGCTCTTCCTCTGTTGCCGACAAGTACCAGCTCGGCTTTTTGCTCTCTTCCTTTGCTTTCAATCTCACCAATCTGTTCGTCTTCACTCCCATGACTATCGAGATGATGAAGCAAAGGCATAAGGTGGAGAGGGAGCAGAACATTGGGGAAGAAGTTGGATGGTCAAAGAATATGCAAGTTGCAAAGGAAAACCCAAAACTGGCAGCCATGAATAAGAAGTTTGGTATGATTCACGGGCTGTCATCTCTGGCCAACATCTTGGCATTTGGCAGCCTTGCTATGCACTCGTGGTACTTGGCTGGTAAACTTAATCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4149

Protein Analysis

214

Amino Acids

23.57

Weight (kDa)

9.7

Isoelectric Point (pI)

38.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62580
fragaria_vesca	FvH4_5g39460 FvH4_5g39460
malus_domestica	MD03G1296800.v1.1 MD04G1089900.v1.1 MD11G1316400.v1.1 MD17G1137100.v1.1
prunus_persica	Prupe.8G270400_v2.0.a1
pyrus_communis	pycom03g23530 pycom11g27610
rosa_chinensis	RchiOBHm_Chr3g0460601 RchiOBHm_Chr4g0442591 RchiOBHm_Chr5g0039051 RchiOBHm_Chr6g0294301 RchiOBHm_Chr7g0189431 RchiOBHm_Chr7g0229621 RchiOBHm_Chr7g0230001 RchiOBHm_Chr7g0230901 RchiOBHm_Chr7g0241771
rosa_laevigata	RLG00000000545
rosa_multiflora	Rmu_sc0000851.1_g000004 Rmu_sc0010095.1_g000003 Rmu_sc0035295.1_g000002
rosa_roxburghii	Rroxscaffold_3G00218680 Rroxscaffold_7G00215870
rosa_rugosa	Rorug06G0497700 Rorug07G0347100
rosa_samantha	Rh2AG433100 Rh5DG465500 Rh7AG501600 Rh7BG472900 Rh7CG517900 Rh7DG104700 Rh7DG403100 Rh7DG486700
rosa_wichuraiana	Rw5G049000 Rw7G033970 Rw7G042400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	161
AccBSI	CCGCTC	1 cut(s)	167
AccII	CGCG	2 cut(s)	16, 217
AciI	CCGC	5 cut(s)	153, 165, 189, 215, 217
AclWI	GGATC	1 cut(s)	85
AcoI	YGGCCR	2 cut(s)	42, 573
AcuI	CTGAAG	1 cut(s)	221
AcyI	GRCGYC	1 cut(s)	162
AfaI	GTAC	2 cut(s)	350, 617
AfiI	CCNNNNNNNGG	4 cut(s)	127, 171, 273, 523
AgsI	TTSAA	2 cut(s)	205, 385
AluBI	AGCT	4 cut(s)	127, 296, 327, 355
AluI	AGCT	4 cut(s)	127, 296, 327, 355
Alw21I	GWGCWC	1 cut(s)	329
Alw26I	GTCTC	1 cut(s)	62
AlwI	GGATC	1 cut(s)	85
AoxI	GGCC	2 cut(s)	42, 573
ApeKI	GCWGC	3 cut(s)	26, 527, 594
AspLEI	GCGC	1 cut(s)	164
AsuC2I	CCSGG	1 cut(s)	65
AsuHPI	GGTGA	2 cut(s)	256, 382
BalI	TGGCCA	2 cut(s)	44, 575
BanI	GGYRCC	1 cut(s)	161
BanII	GRGCYC	1 cut(s)	329
BauI	CACGAG	1 cut(s)	610
BbsI	GAAGAC	1 cut(s)	397
Bbv12I	GWGCWC	1 cut(s)	329
BbvI	GCAGC	3 cut(s)	38, 539, 606
BccI	CCATC	2 cut(s)	53, 477
BceAI	ACGGC	1 cut(s)	14
BcnI	CCSGG	1 cut(s)	65
BcoDI	GTCTC	1 cut(s)	62
BfaI	CTAG	1 cut(s)	23
BfoI	RGCGCY	1 cut(s)	165
BisI	GCNGC	6 cut(s)	27, 165, 190, 218, 528, 595
BlsI	GCNGC	6 cut(s)	28, 166, 191, 219, 529, 596
Bme1390I	CCNGG	1 cut(s)	65
BmiI	GGNNCC	1 cut(s)	163
BmrFI	CCNGG	1 cut(s)	65
BmsI	GCATC	3 cut(s)	201, 229, 325
BpiI	GAAGAC	1 cut(s)	397
BpuMI	CCSGG	1 cut(s)	65
BsaBI	GATNNNNATC	1 cut(s)	82
BsaHI	GRCGYC	1 cut(s)	162
BsaI	GGTCTC	1 cut(s)	62
BsaJI	CCNNGG	5 cut(s)	30, 63, 215, 267, 320
Bsc4I	CCNNNNNNNGG	4 cut(s)	127, 171, 273, 523
Bse1I	ACTGG	1 cut(s)	528
Bse8I	GATNNNNATC	1 cut(s)	82
BseDI	CCNNGG	5 cut(s)	30, 63, 215, 267, 320
BseGI	GGATG	2 cut(s)	316, 488
BseJI	GATNNNNATC	1 cut(s)	82
BseLI	CCNNNNNNNGG	4 cut(s)	127, 171, 273, 523
BseNI	ACTGG	1 cut(s)	528
BseXI	GCAGC	3 cut(s)	38, 539, 606
BseYI	CCCAGC	1 cut(s)	296
Bsh1236I	CGCG	2 cut(s)	16, 217
BshFI	GGCC	2 cut(s)	44, 575
BshNI	GGYRCC	1 cut(s)	161
BsiHKAI	GWGCWC	1 cut(s)	329
BsiSI	CCGG	2 cut(s)	65, 254
BslI	CCNNNNNNNGG	4 cut(s)	127, 171, 273, 523
BsmAI	GTCTC	1 cut(s)	62
BsmI	GAATGC	1 cut(s)	155
BsnI	GGCC	2 cut(s)	44, 575
Bso31I	GGTCTC	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	329
Bsp143I	GATC	1 cut(s)	77
Bsp19I	CCATGG	1 cut(s)	267
BspACI	CCGC	5 cut(s)	153, 165, 189, 215, 217
BspANI	GGCC	2 cut(s)	44, 575
BspFNI	CGCG	2 cut(s)	16, 217
BspLI	GGNNCC	1 cut(s)	163
BspPI	GGATC	1 cut(s)	85
BspQI	GCTCTTC	1 cut(s)	334
BspT107I	GGYRCC	1 cut(s)	161
BspTNI	GGTCTC	1 cut(s)	62
BsrBI	CCGCTC	1 cut(s)	167
BsrI	ACTGG	1 cut(s)	528
BssECI	CCNNGG	5 cut(s)	30, 63, 215, 267, 320
BssMI	GATC	1 cut(s)	77
BssNI	GRCGYC	1 cut(s)	162
BssSI	CACGAG	1 cut(s)	610
BssT1I	CCWWGG	1 cut(s)	267
Bst2BI	CACGAG	1 cut(s)	610
Bst4CI	ACNGT	1 cut(s)	92
Bst6I	CTCTTC	2 cut(s)	334, 376
BstACI	GRCGYC	1 cut(s)	162
BstC8I	GCNNGC	1 cut(s)	129
BstDSI	CCRYGG	4 cut(s)	30, 215, 267, 320
BstF5I	GGATG	2 cut(s)	316, 488
BstFNI	CGCG	2 cut(s)	16, 217
BstH2I	RGCGCY	1 cut(s)	165
BstHHI	GCGC	1 cut(s)	164
BstKTI	GATC	1 cut(s)	80
BstMAI	GTCTC	1 cut(s)	62
BstMBI	GATC	1 cut(s)	77
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 41, 161, 293
BstSCI	CCNGG	1 cut(s)	63
BstUI	CGCG	2 cut(s)	16, 217
BstV1I	GCAGC	3 cut(s)	38, 539, 606
BstV2I	GAAGAC	1 cut(s)	397
BstXI	CCANNNNNNTGG	1 cut(s)	583
BsuRI	GGCC	2 cut(s)	44, 575
BtgI	CCRYGG	4 cut(s)	30, 215, 267, 320
BtsCI	GGATG	2 cut(s)	316, 488
Cac8I	GCNNGC	1 cut(s)	129
CfoI	GCGC	1 cut(s)	164
Cfr42I	CCGCGG	1 cut(s)	218
CseI	GACGC	1 cut(s)	22
Csp6I	GTAC	2 cut(s)	349, 616
CviAII	CATG	4 cut(s)	199, 268, 415, 532
CviQI	GTAC	2 cut(s)	349, 616
DinI	GGCGCC	1 cut(s)	163
DpnI	GATC	1 cut(s)	79
DpnII	GATC	1 cut(s)	77
EaeI	YGGCCR	2 cut(s)	42, 573
Eam1104I	CTCTTC	2 cut(s)	334, 376
EarI	CTCTTC	2 cut(s)	334, 376
Ecl136II	GAGCTC	1 cut(s)	327
Eco130I	CCWWGG	1 cut(s)	267
Eco24I	GRGCYC	1 cut(s)	329
Eco31I	GGTCTC	1 cut(s)	62
Eco53kI	GAGCTC	1 cut(s)	327
Eco57I	CTGAAG	1 cut(s)	221
EcoICRI	GAGCTC	1 cut(s)	327
EcoT14I	CCWWGG	1 cut(s)	267
EcoT38I	GRGCYC	1 cut(s)	329
EgeI	GGCGCC	1 cut(s)	163
EheI	GGCGCC	1 cut(s)	163
ErhI	CCWWGG	1 cut(s)	267
FaeI	CATG	4 cut(s)	202, 271, 418, 535
FaiI	YATR	9 cut(s)	200, 269, 280, 416, 444, 497, 533, 551, 605
FatI	CATG	4 cut(s)	198, 267, 414, 531
Fnu4HI	GCNGC	6 cut(s)	27, 165, 190, 218, 528, 595
FokI	GGATG	2 cut(s)	303, 495
FriOI	GRGCYC	1 cut(s)	329
Fsp4HI	GCNGC	6 cut(s)	27, 165, 190, 218, 528, 595
FspBI	CTAG	1 cut(s)	23
GlaI	GCGC	1 cut(s)	163
GluI	GCNGC	6 cut(s)	27, 165, 190, 218, 528, 595
GsaI	CCCAGC	1 cut(s)	300
HaeII	RGCGCY	1 cut(s)	165
HaeIII	GGCC	2 cut(s)	44, 575
HapII	CCGG	2 cut(s)	65, 254
HgaI	GACGC	1 cut(s)	22
HhaI	GCGC	1 cut(s)	164
Hin1I	GRCGYC	1 cut(s)	162
Hin1II	CATG	4 cut(s)	202, 271, 418, 535
Hin6I	GCGC	1 cut(s)	162
HinP1I	GCGC	1 cut(s)	162
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HinfI	GANTC	4 cut(s)	18, 208, 232, 553
HpaII	CCGG	2 cut(s)	65, 254
HphI	GGTGA	2 cut(s)	256, 382
Hpy166II	GTNNAC	2 cut(s)	12, 629
Hpy188I	TCNGA	4 cut(s)	50, 88, 96, 240
Hpy188III	TCNNGA	3 cut(s)	205, 229, 424
Hpy8I	GTNNAC	2 cut(s)	12, 629
HpyCH4III	ACNGT	1 cut(s)	92
HpyCH4V	TGCA	4 cut(s)	316, 499, 506, 607
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 41, 161, 293
Hsp92I	GRCGYC	1 cut(s)	162
Hsp92II	CATG	4 cut(s)	202, 271, 418, 535
HspAI	GCGC	1 cut(s)	162
KasI	GGCGCC	1 cut(s)	161
KspI	CCGCGG	1 cut(s)	218
Kzo9I	GATC	1 cut(s)	77
LguI	GCTCTTC	1 cut(s)	334
LmnI	GCTCC	2 cut(s)	324, 457
LpnPI	CCDG	9 cut(s)	78, 113, 157, 267, 282, 365, 509, 557, 609
Lsp1109I	GCAGC	3 cut(s)	38, 539, 606
LweI	GCATC	3 cut(s)	201, 229, 325
MaeI	CTAG	1 cut(s)	23
MaeIII	GTNAC	1 cut(s)	175
MalI	GATC	1 cut(s)	79
MbiI	CCGCTC	1 cut(s)	167
MboI	GATC	1 cut(s)	77
MboII	GAAGA	6 cut(s)	203, 227, 321, 363, 397, 485
MhlI	GDGCHC	1 cut(s)	329
MlsI	TGGCCA	2 cut(s)	44, 575
MluNI	TGGCCA	2 cut(s)	44, 575
Mly113I	GGCGCC	1 cut(s)	162
MmeI	TCCRAC	1 cut(s)	460
MnlI	CCTC	4 cut(s)	119, 293, 343, 447
Mox20I	TGGCCA	2 cut(s)	44, 575
MscI	TGGCCA	2 cut(s)	44, 575
MseI	TTAA	1 cut(s)	633
MslI	CAYNNNNRTG	3 cut(s)	50, 197, 413
Msp20I	TGGCCA	2 cut(s)	44, 575
MspA1I	CMGCKG	2 cut(s)	217, 296
MspI	CCGG	2 cut(s)	65, 254
MspR9I	CCNGG	1 cut(s)	65
Mva1269I	GAATGC	1 cut(s)	155
MvnI	CGCG	2 cut(s)	16, 217
MwoI	GCNNNNNNNGC	4 cut(s)	32, 41, 161, 293
NarI	GGCGCC	1 cut(s)	162
NciI	CCSGG	1 cut(s)	65
NcoI	CCATGG	1 cut(s)	267
NdeII	GATC	1 cut(s)	77
NlaIII	CATG	4 cut(s)	202, 271, 418, 535
NlaIV	GGNNCC	1 cut(s)	163
NmeAIII	GCCGAG	1 cut(s)	336
NmuCI	GTSAC	1 cut(s)	175
PciSI	GCTCTTC	1 cut(s)	334
PctI	GAATGC	1 cut(s)	155
PfeI	GAWTC	4 cut(s)	18, 208, 232, 553
PkrI	GCNGC	6 cut(s)	28, 166, 191, 219, 529, 596
PluTI	GGCGCC	1 cut(s)	165
Psp124BI	GAGCTC	1 cut(s)	329
PspFI	CCCAGC	1 cut(s)	296
PspN4I	GGNNCC	1 cut(s)	163
PvuII	CAGCTG	1 cut(s)	296
RsaI	GTAC	2 cut(s)	350, 617
RsaNI	GTAC	2 cut(s)	349, 616
RseI	CAYNNNNRTG	3 cut(s)	50, 197, 413
SacI	GAGCTC	1 cut(s)	329
SacII	CCGCGG	1 cut(s)	218
SapI	GCTCTTC	1 cut(s)	334
SaqAI	TTAA	1 cut(s)	633
SatI	GCNGC	6 cut(s)	27, 165, 190, 218, 528, 595
Sau3AI	GATC	1 cut(s)	77
ScrFI	CCNGG	1 cut(s)	65
SduI	GDGCHC	1 cut(s)	329
SetI	ASST	8 cut(s)	74, 119, 123, 129, 298, 329, 357, 450
SfaNI	GCATC	3 cut(s)	201, 229, 325
SfoI	GGCGCC	1 cut(s)	163
Sfr303I	CCGCGG	1 cut(s)	218
SgrBI	CCGCGG	1 cut(s)	218
SmiMI	CAYNNNNRTG	3 cut(s)	50, 197, 413
SsiI	CCGC	5 cut(s)	153, 165, 189, 215, 217
SspDI	GGCGCC	1 cut(s)	161
SspMI	CTAG	1 cut(s)	23
SstI	GAGCTC	1 cut(s)	329
StyD4I	CCNGG	1 cut(s)	63
StyI	CCWWGG	1 cut(s)	267
TaaI	ACNGT	1 cut(s)	92
TaqI	TCGA	2 cut(s)	80, 423
TauI	GCSGC	3 cut(s)	167, 192, 220
TfiI	GAWTC	4 cut(s)	18, 208, 232, 553
Tru1I	TTAA	1 cut(s)	633
Tru9I	TTAA	1 cut(s)	633
TseFI	GTSAC	1 cut(s)	175
TseI	GCWGC	3 cut(s)	26, 527, 594
Tsp45I	GTSAC	1 cut(s)	175
TspDTI	ATGAA	3 cut(s)	172, 446, 548
TspGWI	ACGGA	1 cut(s)	309
XspI	CTAG	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.