Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003654

Physical Location & Seq

Genomic Coordinates Reverse (-)

34157168 .. 34158634

Gene Structure 1467 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G377500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGCGACCACGATGATGATCAAGTGCTTCTTTGCCATGGCCATAATATTGCATGCTTTTGTGGCTTTTTCTAAAGCAGAAGCAGACACAACCCAGGGGTCAACAGCCGTTCTCATCACGGTTGACCAGTCAGGCAAAGGAGATTACAAGAAAATACAAGATGCCATTGATGCCGTGCCGTCTAATAACGTGGATCTTGTGTTTATTAGGGTTAGGCGTGGAGTGTACGAAGAAAAAATTAGTGTGCCCGCTGACAAACCCTTCATTACAATAAGTGGCACAAAGGCAAACGACACCATAATAACATGGAACGACGGTGGGGAGATATTTGAATCTCCAACTTTCTCTGTTTTGGCTTCTGATTTTATAGGCCGCTATCTCACAATTCAGAACACTTACGGAGCGGGTGGCAAAGCAGTGGCGCTAAGGGTGTCGGGAGATAGAGCAGCATTTTATGGGTGCAAAATATTGTCTTATCAGGACACCCTACTTGATGACACCGGCAGGCACTACTACAACAACTGTTATATTGAAGGAGCTACTGATTTTATATGTGGAAATGCTGCTTCTTTTTTTGAGAGGTGTCATTTGCATTCAATTTCGGGAGGAGCAGGAGCCATAACAGCTCAACGAAGGATGTCACCTTCAGAGGACACAGGGTTCACCTTCTTCAGCTGCAAAATCAGTGGCGTCAAAACGGCAATGTTAGGAAGACCGTGGGGTGGCTATTCAAGAGTCGTCTTTGCCTTCACTTACATGTCCAATGCCATACTTCCACAAGGTTGGGACGACTGGGGAAACTCACCCGACCAATTAAGTACGGTTTACTATGGGCAATATAGATGTTCTGGAGCTGGAGCTGCAACATCAAAAAGAGTTGAATGGGCACGTAACCTTACGGGTGAAGAAGCTGCACCCTTCTTAACCAAGGACTCCATCGATGGCAAAGCTTGGATAAGATCAGCCCCAACCAGCTTCAAGAAGAAAGCATTTTCTACTAAGACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Pectinesterase

Protein Analysis

336

Amino Acids

36.54

Weight (kDa)

8.36

Isoelectric Point (pI)

34.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003654)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21610 AT2G21610
fragaria_vesca	FvH4_2g39830 FvH4_3g36820 FvH4_3g36820
malus_domestica	MD08G1029800.v1.1 MD13G1062700.v1.1 MD15G1014700.v1.1 MD15G1025000.v1.1 MD15G1025100.v1.1 MD15G1025200.v1.1
prunus_persica	Prupe.1G377100_v2.0.a1 Prupe.1G377500_v2.0.a1 Prupe.1G377600_v2.0.a1
pyrus_communis	pycom15g02160
rosa_chinensis	RchiOBHm_Chr5g0065901 RchiOBHm_Chr6g0301011
rosa_laevigata	RLG00000011285 RLG00000035826
rosa_multiflora	Rmu_sc0003168.1_g000006 Rmu_sc0006634.1_g000003 Rmu_sc0024042.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015260 Rroxscaffold_7G00167260
rosa_rugosa	Rorug05G0375500 Rorug06G0299900
rosa_samantha	Rh5AG433500 Rh5BG449700 Rh5CG472300 Rh5DG463300 Rh6AG413900 Rh6BG420800 Rh6CG428400 Rh6DG413800
rosa_wichuraiana	Rw5G040630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	404
AciI	CCGC	3 cut(s)	249, 373, 404
AclWI	GGATC	1 cut(s)	201
AcoI	YGGCCR	1 cut(s)	39
AcuI	CTGAAG	2 cut(s)	630, 655
AcyI	GRCGYC	1 cut(s)	690
AfaI	GTAC	2 cut(s)	227, 820
AfiI	CCNNNNNNNGG	1 cut(s)	722
AflIII	ACRYGT	1 cut(s)	756
AgsI	TTSAA	6 cut(s)	332, 533, 597, 732, 881, 979
AjnI	CCWGG	1 cut(s)	93
AloI	GAACNNNNNNTCC	2 cut(s)	644, 676
AluBI	AGCT	8 cut(s)	539, 626, 675, 854, 860, 911, 950, 975
AluI	AGCT	8 cut(s)	539, 626, 675, 854, 860, 911, 950, 975
AlwI	GGATC	1 cut(s)	201
AoxI	GGCC	2 cut(s)	39, 370
ApeKI	GCWGC	5 cut(s)	446, 563, 675, 860, 911
AspLEI	GCGC	1 cut(s)	424
AsuHPI	GGTGA	4 cut(s)	633, 655, 795, 914
BaeGI	GKGCMC	2 cut(s)	249, 889
BalI	TGGCCA	1 cut(s)	41
BbsI	GAAGAC	1 cut(s)	718
BbvI	GCAGC	5 cut(s)	458, 550, 662, 847, 898
BccI	CCATC	2 cut(s)	935, 944
BceAI	ACGGC	4 cut(s)	92, 158, 163, 714
BciT130I	CCWGG	1 cut(s)	95
BclI	TGATCA	1 cut(s)	18
BfoI	RGCGCY	1 cut(s)	425
BisI	GCNGC	6 cut(s)	373, 447, 564, 676, 861, 912
BlsI	GCNGC	6 cut(s)	374, 448, 565, 677, 862, 913
Bme1390I	CCNGG	1 cut(s)	95
BmiI	GGNNCC	1 cut(s)	616
BmrFI	CCNGG	1 cut(s)	95
BmrI	ACTGGG	1 cut(s)	802
BmsI	GCATC	2 cut(s)	151, 160
BmuI	ACTGGG	1 cut(s)	802
BpiI	GAAGAC	1 cut(s)	718
BpmI	CTGGAG	2 cut(s)	870, 876
Bpu10I	CCTNAGC	1 cut(s)	425
Bsa29I	ATCGAT	1 cut(s)	939
BsaAI	YACGTR	1 cut(s)	890
BsaBI	GATNNNNATC	1 cut(s)	17
BsaHI	GRCGYC	1 cut(s)	690
BsaJI	CCNNGG	5 cut(s)	36, 93, 94, 716, 927
Bsc4I	CCNNNNNNNGG	1 cut(s)	722
Bse118I	RCCGGY	1 cut(s)	500
Bse1I	ACTGG	2 cut(s)	127, 797
Bse3DI	GCAATG	1 cut(s)	708
Bse8I	GATNNNNATC	1 cut(s)	17
BseBI	CCWGG	1 cut(s)	95
BseCI	ATCGAT	1 cut(s)	939
BseDI	CCNNGG	5 cut(s)	36, 93, 94, 716, 927
BseGI	GGATG	1 cut(s)	642
BseJI	GATNNNNATC	1 cut(s)	17
BseLI	CCNNNNNNNGG	1 cut(s)	722
BseMI	GCAATG	1 cut(s)	708
BseNI	ACTGG	2 cut(s)	127, 797
BseRI	GAGGAG	1 cut(s)	621
BseSI	GKGCMC	2 cut(s)	249, 889
BseXI	GCAGC	5 cut(s)	458, 550, 662, 847, 898
BsgI	GTGCAG	1 cut(s)	897
BshFI	GGCC	2 cut(s)	41, 372
BshVI	ATCGAT	1 cut(s)	939
BsiSI	CCGG	1 cut(s)	501
BslFI	GGGAC	1 cut(s)	800
BslI	CCNNNNNNNGG	1 cut(s)	722
BsmFI	GGGAC	1 cut(s)	800
BsmI	GAATGC	1 cut(s)	592
BsnI	GGCC	2 cut(s)	41, 372
Bsp1286I	GDGCHC	2 cut(s)	249, 889
Bsp143I	GATC	3 cut(s)	18, 193, 959
Bsp19I	CCATGG	1 cut(s)	36
BspACI	CCGC	3 cut(s)	249, 373, 404
BspANI	GGCC	2 cut(s)	41, 372
BspDI	ATCGAT	1 cut(s)	939
BspLI	GGNNCC	1 cut(s)	616
BspPI	GGATC	1 cut(s)	201
BsrBI	CCGCTC	1 cut(s)	404
BsrDI	GCAATG	1 cut(s)	708
BsrFI	RCCGGY	1 cut(s)	500
BsrI	ACTGG	2 cut(s)	127, 797
BssAI	RCCGGY	1 cut(s)	500
BssECI	CCNNGG	5 cut(s)	36, 93, 94, 716, 927
BssMI	GATC	3 cut(s)	18, 193, 959
BssNI	GRCGYC	1 cut(s)	690
BssT1I	CCWWGG	2 cut(s)	36, 927
Bst2UI	CCWGG	1 cut(s)	95
Bst4CI	ACNGT	5 cut(s)	121, 317, 524, 717, 823
BstACI	GRCGYC	1 cut(s)	690
BstBAI	YACGTR	1 cut(s)	890
BstC8I	GCNNGC	3 cut(s)	54, 249, 506
BstDEI	CTNAG	2 cut(s)	425, 999
BstDSI	CCRYGG	2 cut(s)	36, 716
BstF5I	GGATG	1 cut(s)	642
BstH2I	RGCGCY	1 cut(s)	425
BstHHI	GCGC	1 cut(s)	424
BstKTI	GATC	3 cut(s)	21, 196, 962
BstMBI	GATC	3 cut(s)	18, 193, 959
BstMWI	GCNNNNNNNGC	4 cut(s)	62, 170, 623, 860
BstNI	CCWGG	1 cut(s)	95
BstNSI	RCATGY	2 cut(s)	56, 760
BstSCI	CCNGG	1 cut(s)	93
BstSLI	GKGCMC	2 cut(s)	249, 889
BstV1I	GCAGC	5 cut(s)	458, 550, 662, 847, 898
BstV2I	GAAGAC	1 cut(s)	718
BstX2I	RGATCY	1 cut(s)	193
BstXI	CCANNNNNNTGG	1 cut(s)	783
BstYI	RGATCY	1 cut(s)	193
Bsu15I	ATCGAT	1 cut(s)	939
BsuRI	GGCC	2 cut(s)	41, 372
BsuTUI	ATCGAT	1 cut(s)	939
BtgI	CCRYGG	2 cut(s)	36, 716
BtsCI	GGATG	1 cut(s)	642
BtsI	GCAGTG	1 cut(s)	423
BtsIMutI	CAGTG	2 cut(s)	423, 691
Cac8I	GCNNGC	3 cut(s)	54, 249, 506
CfoI	GCGC	1 cut(s)	424
Cfr10I	RCCGGY	1 cut(s)	500
ClaI	ATCGAT	1 cut(s)	939
CseI	GACGC	1 cut(s)	679
Csp6I	GTAC	2 cut(s)	226, 819
CspCI	CAANNNNNGTGG	2 cut(s)	667, 702
CviAII	CATG	4 cut(s)	37, 53, 306, 757
CviQI	GTAC	2 cut(s)	226, 819
DdeI	CTNAG	2 cut(s)	425, 999
DpnI	GATC	3 cut(s)	20, 195, 961
DpnII	GATC	3 cut(s)	18, 193, 959
EaeI	YGGCCR	1 cut(s)	39
Eco130I	CCWWGG	2 cut(s)	36, 927
Eco57I	CTGAAG	2 cut(s)	630, 655
EcoRII	CCWGG	1 cut(s)	93
EcoT14I	CCWWGG	2 cut(s)	36, 927
ErhI	CCWWGG	2 cut(s)	36, 927
FaeI	CATG	4 cut(s)	40, 56, 309, 760
FalI	AAGNNNNNCTT	2 cut(s)	14, 46
FaqI	GGGAC	1 cut(s)	800
FatI	CATG	4 cut(s)	36, 52, 305, 756
FauI	CCCGC	2 cut(s)	256, 397
FbaI	TGATCA	1 cut(s)	18
Fnu4HI	GCNGC	6 cut(s)	373, 447, 564, 676, 861, 912
FokI	GGATG	1 cut(s)	649
Fsp4HI	GCNGC	6 cut(s)	373, 447, 564, 676, 861, 912
GlaI	GCGC	1 cut(s)	423
GluI	GCNGC	6 cut(s)	373, 447, 564, 676, 861, 912
GsuI	CTGGAG	2 cut(s)	870, 876
HaeII	RGCGCY	1 cut(s)	425
HaeIII	GGCC	2 cut(s)	41, 372
HapII	CCGG	1 cut(s)	501
HgaI	GACGC	1 cut(s)	679
HhaI	GCGC	1 cut(s)	424
Hin1I	GRCGYC	1 cut(s)	690
Hin1II	CATG	4 cut(s)	40, 56, 309, 760
Hin6I	GCGC	1 cut(s)	422
HinP1I	GCGC	1 cut(s)	422
HincII	GTYRAC	2 cut(s)	102, 124
HindII	GTYRAC	2 cut(s)	102, 124
HindIII	AAGCTT	1 cut(s)	948
HinfI	GANTC	3 cut(s)	332, 735, 932
HpaII	CCGG	1 cut(s)	501
HphI	GGTGA	4 cut(s)	633, 655, 795, 914
Hpy166II	GTNNAC	5 cut(s)	102, 124, 226, 663, 826
Hpy188I	TCNGA	3 cut(s)	361, 390, 649
Hpy188III	TCNNGA	6 cut(s)	435, 479, 603, 732, 849, 979
Hpy8I	GTNNAC	5 cut(s)	102, 124, 226, 663, 826
Hpy99I	CGWCG	1 cut(s)	317
HpyAV	CCTTC	7 cut(s)	271, 527, 627, 654, 676, 757, 928
HpyCH4III	ACNGT	5 cut(s)	121, 317, 524, 717, 823
HpyCH4IV	ACGT	2 cut(s)	189, 889
HpyCH4V	TGCA	6 cut(s)	52, 462, 592, 678, 863, 914
HpyF10VI	GCNNNNNNNGC	4 cut(s)	62, 170, 623, 860
HpyF3I	CTNAG	2 cut(s)	425, 999
HpySE526I	ACGT	2 cut(s)	189, 889
Hsp92I	GRCGYC	1 cut(s)	690
Hsp92II	CATG	4 cut(s)	40, 56, 309, 760
HspAI	GCGC	1 cut(s)	422
Ksp22I	TGATCA	1 cut(s)	18
Kzo9I	GATC	3 cut(s)	18, 193, 959
LmnI	GCTCC	6 cut(s)	401, 536, 608, 614, 851, 857
Lsp1109I	GCAGC	5 cut(s)	458, 550, 662, 847, 898
LweI	GCATC	2 cut(s)	151, 160
MaeII	ACGT	2 cut(s)	189, 889
MaeIII	GTNAC	2 cut(s)	639, 890
MalI	GATC	3 cut(s)	20, 195, 961
MbiI	CCGCTC	1 cut(s)	404
MboI	GATC	3 cut(s)	18, 193, 959
MboII	GAAGA	5 cut(s)	242, 661, 723, 917, 994
MflI	RGATCY	1 cut(s)	193
MhlI	GDGCHC	2 cut(s)	249, 889
MlsI	TGGCCA	1 cut(s)	41
MluCI	AATT	4 cut(s)	237, 384, 597, 812
MluNI	TGGCCA	1 cut(s)	41
MlyI	GAGTC	2 cut(s)	744, 926
MmeI	TCCRAC	1 cut(s)	362
MnlI	CCTC	3 cut(s)	573, 599, 643
Mox20I	TGGCCA	1 cut(s)	41
MscI	TGGCCA	1 cut(s)	41
MseI	TTAA	3 cut(s)	815, 923, 1006
MslI	CAYNNNNRTG	2 cut(s)	14, 755
Msp20I	TGGCCA	1 cut(s)	41
MspA1I	CMGCKG	2 cut(s)	251, 675
MspI	CCGG	1 cut(s)	501
MspR9I	CCNGG	1 cut(s)	95
Mva1269I	GAATGC	1 cut(s)	592
MvaI	CCWGG	1 cut(s)	95
MwoI	GCNNNNNNNGC	4 cut(s)	62, 170, 623, 860
NcoI	CCATGG	1 cut(s)	36
NdeII	GATC	3 cut(s)	18, 193, 959
NlaIII	CATG	4 cut(s)	40, 56, 309, 760
NlaIV	GGNNCC	1 cut(s)	616
NmuCI	GTSAC	1 cut(s)	639
NspI	RCATGY	2 cut(s)	56, 760
PaeI	GCATGC	1 cut(s)	56
PasI	CCCWGGG	1 cut(s)	94
PciI	ACATGT	1 cut(s)	756
PctI	GAATGC	1 cut(s)	592
PfeI	GAWTC	1 cut(s)	332
PkrI	GCNGC	6 cut(s)	374, 448, 565, 677, 862, 913
PleI	GAGTC	2 cut(s)	743, 926
PpsI	GAGTC	2 cut(s)	743, 926
Ppu21I	YACGTR	1 cut(s)	890
PscI	ACATGT	1 cut(s)	756
Psp6I	CCWGG	1 cut(s)	93
PspGI	CCWGG	1 cut(s)	93
PspN4I	GGNNCC	1 cut(s)	616
PsuI	RGATCY	1 cut(s)	193
PvuII	CAGCTG	1 cut(s)	675
RsaI	GTAC	2 cut(s)	227, 820
RsaNI	GTAC	2 cut(s)	226, 819
RseI	CAYNNNNRTG	2 cut(s)	14, 755
SaqAI	TTAA	3 cut(s)	815, 923, 1006
SatI	GCNGC	6 cut(s)	373, 447, 564, 676, 861, 912
Sau3AI	GATC	3 cut(s)	18, 193, 959
SchI	GAGTC	2 cut(s)	744, 926
ScrFI	CCNGG	1 cut(s)	95
SduI	GDGCHC	2 cut(s)	249, 889
SfaNI	GCATC	2 cut(s)	151, 160
SmiMI	CAYNNNNRTG	2 cut(s)	14, 755
SphI	GCATGC	1 cut(s)	56
Sse9I	AATT	4 cut(s)	237, 384, 597, 812
SsiI	CCGC	3 cut(s)	249, 373, 404
SspI	AATATT	2 cut(s)	48, 468
StyD4I	CCNGG	1 cut(s)	93
StyI	CCWWGG	2 cut(s)	36, 927
TaaI	ACNGT	5 cut(s)	121, 317, 524, 717, 823
TaiI	ACGT	2 cut(s)	192, 892
TaqI	TCGA	1 cut(s)	939
TasI	AATT	4 cut(s)	237, 384, 597, 812
TauI	GCSGC	1 cut(s)	375
TfiI	GAWTC	1 cut(s)	332
Tru1I	TTAA	3 cut(s)	815, 923, 1006
Tru9I	TTAA	3 cut(s)	815, 923, 1006
TscAI	CASTG	2 cut(s)	423, 691
TseFI	GTSAC	1 cut(s)	639
TseI	GCWGC	5 cut(s)	446, 563, 675, 860, 911
Tsp45I	GTSAC	1 cut(s)	639
TspDTI	ATGAA	1 cut(s)	253
TspGWI	ACGGA	1 cut(s)	414
TspRI	CASTG	2 cut(s)	423, 691
XceI	RCATGY	2 cut(s)	56, 760

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.