Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003654

Physical Location & Seq

Genomic Coordinates Reverse (-)

34159207 .. 34160954

Gene Structure 1748 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G377600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGCAAAATTCAACGAAATCTTATTATTGGCAATATATGGCCATGCTCTTCTTCTATGCTTTCATGGTGATGATGGGTGTGCTCTCTCAAGCACACCCAACACCACCAATTTCTCTAACCGTCGATCAGTCCGGCAAAGGTGACTATACTAAAATACAAGACGCTATTGATGCCGTGCCGTCTAACAACGCCGTGCCTGTGTCGATTTGGGTTCGACCTGGTGTCTACCAAGAAAAAGTTTATGTGCCTGCAGACAAACCCTTTATAACAATGAGTGGCACAAACGCAGAGCAGACCATAGTAACATGGAACCAAGCCGGATGGATAAATCAAACCGCAGTCTTTGCTGTGTGGGCTTCTGATTTTACAGGACGCCAACTCACAATTCAGAATACATATGGAACCGGTGACAAAACAGTGGCACTAAGAGTATCAGGAGACAGAGCAGCATTCTATGGGTGCAAAATTTTGTCCCATCAAGATGCGTTATTTGACGAGATTGGCAAGCACTACTACAAAGACTGCTTCATTCAAGGAGACACTGATTTTATATTTGGAAGTGCTGATTCTTTATATGCGAATTGTCACTTGCATACACTTTCGGGTCAAAACGGAGCTATAACGGCCCAACGACGAACTTCTCCTTCAGAGGAATCTGGGTTCACCTTTTTGTGGTGCAACATCACCGGCGTCAAAACGGCACTCTTGGGAAGGCCATGGGGGCCATATGCCAGAGTCGTATTTGCCTACACTCAAATGTCAAACGTGATTCTGCCACAAGGTTGGGACAGTTGGGGGCTATCACCCTACAACTTAAGTAACGTTTTCTATGGGGAATACAACTGTTTTGGACCGGGAGCCGTGACAACACAAAGAGTTAATTGGGCACACAAGCTTACCACCAGAGAATTTGCACACTTCATGGCTCAGGCTAGTGCCCTTCGGCGTACAATTATTGGTAGCGACGGAGGAGGAGGGAAACGTGGAGCTTCCACTCCCATTGGAGGAGAAGGAAACAAAGCCAACGTGGAGCAGGCTCTCGCTTCAGCTGCAGGGCTCACCATTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Pectinesterase

Protein Analysis

357

Amino Acids

39.03

Weight (kDa)

7.04

Isoelectric Point (pI)

37.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003654)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21610 AT2G21610
fragaria_vesca	FvH4_2g39830 FvH4_3g36820 FvH4_3g36820
malus_domestica	MD08G1029800.v1.1 MD13G1062700.v1.1 MD15G1014700.v1.1 MD15G1025000.v1.1 MD15G1025100.v1.1 MD15G1025200.v1.1
prunus_persica	Prupe.1G377100_v2.0.a1 Prupe.1G377500_v2.0.a1 Prupe.1G377600_v2.0.a1
pyrus_communis	pycom15g02160
rosa_chinensis	RchiOBHm_Chr5g0065901 RchiOBHm_Chr6g0301011
rosa_laevigata	RLG00000011285 RLG00000035826
rosa_multiflora	Rmu_sc0003168.1_g000006 Rmu_sc0006634.1_g000003 Rmu_sc0024042.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015260 Rroxscaffold_7G00167260
rosa_rugosa	Rorug05G0375500 Rorug06G0299900
rosa_samantha	Rh5AG433500 Rh5BG449700 Rh5CG472300 Rh5DG463300 Rh6AG413900 Rh6BG420800 Rh6CG428400 Rh6DG413800
rosa_wichuraiana	Rw5G040630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	266
AccI	GTMKAC	1 cut(s)	225
AciI	CCGC	1 cut(s)	336
AclI	AACGTT	1 cut(s)	822
AcoI	YGGCCR	1 cut(s)	39
AcsI	RAATTY	3 cut(s)	7, 465, 908
AcuI	CTGAAG	2 cut(s)	630, 1029
AcyI	GRCGYC	2 cut(s)	373, 690
AfaI	GTAC	1 cut(s)	949
AfiI	CCNNNNNNNGG	2 cut(s)	672, 1004
AflII	CTTAAG	1 cut(s)	814
AgeI	ACCGGT	1 cut(s)	404
AgsI	TTSAA	2 cut(s)	12, 533
AhdI	GACNNNNNGTC	1 cut(s)	221
AjnI	CCWGG	1 cut(s)	217
AjuI	GAANNNNNNNTTGG	2 cut(s)	369, 401
AloI	GAACNNNNNNTCC	2 cut(s)	644, 676
AluBI	AGCT	4 cut(s)	617, 895, 989, 1049
AluI	AGCT	4 cut(s)	617, 895, 989, 1049
Alw21I	GWGCWC	1 cut(s)	84
Alw26I	GTCTC	2 cut(s)	432, 531
AoxI	GGCC	4 cut(s)	39, 624, 713, 722
ApeKI	GCWGC	2 cut(s)	446, 1049
ApoI	RAATTY	3 cut(s)	7, 465, 908
AsiGI	ACCGGT	1 cut(s)	404
AspS9I	GGNCC	3 cut(s)	625, 722, 851
AsuC2I	CCSGG	1 cut(s)	855
AsuHPI	GGTGA	7 cut(s)	79, 152, 419, 655, 676, 795, 1051
AvaII	GGWCC	1 cut(s)	851
BaeGI	GKGCMC	2 cut(s)	889, 940
BalI	TGGCCA	1 cut(s)	41
BanII	GRGCYC	1 cut(s)	1059
Bbv12I	GWGCWC	1 cut(s)	84
BbvI	GCAGC	2 cut(s)	458, 1036
BccI	CCATC	3 cut(s)	67, 315, 483
BceAI	ACGGC	6 cut(s)	158, 163, 176, 639, 714, 845
BciT130I	CCWGG	1 cut(s)	219
BcnI	CCSGG	1 cut(s)	855
BcoDI	GTCTC	2 cut(s)	432, 531
BfaI	CTAG	1 cut(s)	933
BfmI	CTRYAG	2 cut(s)	249, 1050
BfrI	CTTAAG	1 cut(s)	814
BglI	GCCNNNNNGGC	1 cut(s)	721
BisI	GCNGC	2 cut(s)	447, 1050
BlsI	GCNGC	2 cut(s)	448, 1051
Bme1390I	CCNGG	2 cut(s)	219, 855
Bme18I	GGWCC	1 cut(s)	851
BmeRI	GACNNNNNGTC	1 cut(s)	221
BmgT120I	GGNCC	3 cut(s)	625, 722, 851
BmiI	GGNNCC	4 cut(s)	311, 403, 723, 859
BmrFI	CCNGG	2 cut(s)	219, 855
BmsI	GCATC	2 cut(s)	160, 472
Bpu10I	CCTNAGC	1 cut(s)	927
BpuEI	CTTGAG	1 cut(s)	72
BpuMI	CCSGG	1 cut(s)	855
BsaHI	GRCGYC	2 cut(s)	373, 690
BsaJI	CCNNGG	1 cut(s)	716
BsaWI	WCCGGW	1 cut(s)	404
Bsc4I	CCNNNNNNNGG	2 cut(s)	672, 1004
Bse118I	RCCGGY	2 cut(s)	404, 686
BseBI	CCWGG	1 cut(s)	219
BseDI	CCNNGG	1 cut(s)	716
BseGI	GGATG	1 cut(s)	326
BseLI	CCNNNNNNNGG	2 cut(s)	672, 1004
BseMII	CTCAG	1 cut(s)	941
BseRI	GAGGAG	3 cut(s)	984, 987, 1020
BseSI	GKGCMC	2 cut(s)	889, 940
BseXI	GCAGC	2 cut(s)	458, 1036
BshFI	GGCC	4 cut(s)	41, 626, 715, 724
BshTI	ACCGGT	1 cut(s)	404
BsiHKAI	GWGCWC	1 cut(s)	84
BsiSI	CCGG	5 cut(s)	132, 318, 405, 687, 854
BslFI	GGGAC	2 cut(s)	457, 800
BslI	CCNNNNNNNGG	2 cut(s)	672, 1004
BsmAI	GTCTC	2 cut(s)	432, 531
BsmFI	GGGAC	2 cut(s)	457, 800
BsmI	GAATGC	1 cut(s)	449
BsnI	GGCC	4 cut(s)	41, 626, 715, 724
Bsp1286I	GDGCHC	4 cut(s)	84, 889, 940, 1059
Bsp143I	GATC	1 cut(s)	124
Bsp19I	CCATGG	1 cut(s)	716
BspACI	CCGC	1 cut(s)	336
BspANI	GGCC	4 cut(s)	41, 626, 715, 724
BspCNI	CTCAG	1 cut(s)	940
BspLI	GGNNCC	4 cut(s)	311, 403, 723, 859
BspMAI	CTGCAG	2 cut(s)	253, 1054
BspQI	GCTCTTC	1 cut(s)	53
BspTI	CTTAAG	1 cut(s)	814
BsrFI	RCCGGY	2 cut(s)	404, 686
BssAI	RCCGGY	2 cut(s)	404, 686
BssECI	CCNNGG	1 cut(s)	716
BssMI	GATC	1 cut(s)	124
BssNI	GRCGYC	2 cut(s)	373, 690
BssT1I	CCWWGG	1 cut(s)	716
Bst2UI	CCWGG	1 cut(s)	219
Bst4CI	ACNGT	4 cut(s)	121, 418, 791, 845
Bst6I	CTCTTC	1 cut(s)	53
BstACI	GRCGYC	2 cut(s)	373, 690
BstAFI	CTTAAG	1 cut(s)	814
BstAPI	GCANNNNNTGC	1 cut(s)	344
BstC8I	GCNNGC	3 cut(s)	249, 506, 1035
BstDEI	CTNAG	2 cut(s)	425, 927
BstDSI	CCRYGG	1 cut(s)	716
BstF5I	GGATG	1 cut(s)	326
BstKTI	GATC	1 cut(s)	127
BstMAI	GTCTC	2 cut(s)	432, 531
BstMBI	GATC	1 cut(s)	124
BstMWI	GCNNNNNNNGC	6 cut(s)	170, 344, 353, 623, 721, 1049
BstNI	CCWGG	1 cut(s)	219
BstSCI	CCNGG	2 cut(s)	217, 853
BstSFI	CTRYAG	2 cut(s)	249, 1050
BstSLI	GKGCMC	2 cut(s)	889, 940
BstV1I	GCAGC	2 cut(s)	458, 1036
BstXI	CCANNNNNNTGG	1 cut(s)	783
BsuRI	GGCC	4 cut(s)	41, 626, 715, 724
BtgI	CCRYGG	1 cut(s)	716
BtsCI	GGATG	1 cut(s)	326
BtsIMutI	CAGTG	2 cut(s)	423, 540
Cac8I	GCNNGC	3 cut(s)	249, 506, 1035
Cfr10I	RCCGGY	2 cut(s)	404, 686
Cfr13I	GGNCC	3 cut(s)	625, 722, 851
CseI	GACGC	3 cut(s)	170, 381, 679
CsiI	ACCWGGT	1 cut(s)	217
Csp6I	GTAC	1 cut(s)	948
CspAI	ACCGGT	1 cut(s)	404
CspCI	CAANNNNNGTGG	2 cut(s)	982, 1017
CviAII	CATG	5 cut(s)	43, 64, 306, 717, 922
CviQI	GTAC	1 cut(s)	948
DdeI	CTNAG	2 cut(s)	425, 927
DpnI	GATC	1 cut(s)	126
DpnII	GATC	1 cut(s)	124
DriI	GACNNNNNGTC	1 cut(s)	221
EaeI	YGGCCR	1 cut(s)	39
Eam1104I	CTCTTC	1 cut(s)	53
Eam1105I	GACNNNNNGTC	1 cut(s)	221
EarI	CTCTTC	1 cut(s)	53
Eco130I	CCWWGG	1 cut(s)	716
Eco24I	GRGCYC	1 cut(s)	1059
Eco47I	GGWCC	1 cut(s)	851
Eco57I	CTGAAG	2 cut(s)	630, 1029
EcoRII	CCWGG	1 cut(s)	217
EcoT14I	CCWWGG	1 cut(s)	716
EcoT38I	GRGCYC	1 cut(s)	1059
ErhI	CCWWGG	1 cut(s)	716
FaeI	CATG	5 cut(s)	46, 67, 309, 720, 925
FaqI	GGGAC	2 cut(s)	457, 800
FatI	CATG	5 cut(s)	42, 63, 305, 716, 921
FauNDI	CATATG	2 cut(s)	397, 727
FblI	GTMKAC	1 cut(s)	225
Fnu4HI	GCNGC	2 cut(s)	447, 1050
FokI	GGATG	1 cut(s)	333
FriOI	GRGCYC	1 cut(s)	1059
Fsp4HI	GCNGC	2 cut(s)	447, 1050
FspBI	CTAG	1 cut(s)	933
GluI	GCNGC	2 cut(s)	447, 1050
HaeIII	GGCC	4 cut(s)	41, 626, 715, 724
HapII	CCGG	5 cut(s)	132, 318, 405, 687, 854
HgaI	GACGC	3 cut(s)	170, 381, 679
Hin1I	GRCGYC	2 cut(s)	373, 690
Hin1II	CATG	5 cut(s)	46, 67, 309, 720, 925
HindIII	AAGCTT	1 cut(s)	893
HinfI	GANTC	4 cut(s)	566, 653, 735, 769
HpaII	CCGG	5 cut(s)	132, 318, 405, 687, 854
HphI	GGTGA	7 cut(s)	79, 152, 419, 655, 676, 795, 1051
Hpy166II	GTNNAC	2 cut(s)	226, 663
Hpy188I	TCNGA	3 cut(s)	361, 390, 649
Hpy188III	TCNNGA	2 cut(s)	435, 479
Hpy8I	GTNNAC	2 cut(s)	226, 663
Hpy99I	CGWCG	3 cut(s)	125, 636, 968
HpyAV	CCTTC	4 cut(s)	654, 705, 950, 1004
HpyCH4III	ACNGT	4 cut(s)	121, 418, 791, 845
HpyCH4IV	ACGT	4 cut(s)	765, 822, 982, 1026
HpyCH4V	TGCA	7 cut(s)	4, 251, 462, 592, 678, 914, 1052
HpyF10VI	GCNNNNNNNGC	6 cut(s)	170, 344, 353, 623, 721, 1049
HpyF3I	CTNAG	2 cut(s)	425, 927
HpySE526I	ACGT	4 cut(s)	765, 822, 982, 1026
Hsp92I	GRCGYC	2 cut(s)	373, 690
Hsp92II	CATG	5 cut(s)	46, 67, 309, 720, 925
Kzo9I	GATC	1 cut(s)	124
LguI	GCTCTTC	1 cut(s)	53
LmnI	GCTCC	4 cut(s)	614, 857, 986, 1030
Lsp1109I	GCAGC	2 cut(s)	458, 1036
LweI	GCATC	2 cut(s)	160, 472
MabI	ACCWGGT	1 cut(s)	217
MaeI	CTAG	1 cut(s)	933
MaeII	ACGT	4 cut(s)	765, 822, 982, 1026
MaeIII	GTNAC	6 cut(s)	140, 301, 407, 584, 818, 862
MalI	GATC	1 cut(s)	126
MboI	GATC	1 cut(s)	124
MboII	GAAGA	2 cut(s)	40, 43
MhlI	GDGCHC	4 cut(s)	84, 889, 940, 1059
MlsI	TGGCCA	1 cut(s)	41
MluCI	AATT	8 cut(s)	7, 108, 384, 465, 580, 880, 908, 951
MluNI	TGGCCA	1 cut(s)	41
MlyI	GAGTC	1 cut(s)	744
MnlI	CCTC	5 cut(s)	643, 962, 965, 968, 998
Mox20I	TGGCCA	1 cut(s)	41
MscI	TGGCCA	1 cut(s)	41
MseI	TTAA	2 cut(s)	815, 879
MslI	CAYNNNNRTG	3 cut(s)	68, 480, 755
Msp20I	TGGCCA	1 cut(s)	41
MspA1I	CMGCKG	1 cut(s)	1049
MspCI	CTTAAG	1 cut(s)	814
MspI	CCGG	5 cut(s)	132, 318, 405, 687, 854
MspR9I	CCNGG	2 cut(s)	219, 855
Mva1269I	GAATGC	1 cut(s)	449
MvaI	CCWGG	1 cut(s)	219
MwoI	GCNNNNNNNGC	6 cut(s)	170, 344, 353, 623, 721, 1049
NciI	CCSGG	1 cut(s)	855
NcoI	CCATGG	1 cut(s)	716
NdeI	CATATG	2 cut(s)	397, 727
NdeII	GATC	1 cut(s)	124
NlaIII	CATG	5 cut(s)	46, 67, 309, 720, 925
NlaIV	GGNNCC	4 cut(s)	311, 403, 723, 859
NmuCI	GTSAC	4 cut(s)	140, 407, 584, 862
PciSI	GCTCTTC	1 cut(s)	53
PctI	GAATGC	1 cut(s)	449
PfeI	GAWTC	3 cut(s)	566, 653, 769
PinAI	ACCGGT	1 cut(s)	404
PkrI	GCNGC	2 cut(s)	448, 1051
PleI	GAGTC	1 cut(s)	743
PpsI	GAGTC	1 cut(s)	743
PsiI	TTATAA	1 cut(s)	266
Psp1406I	AACGTT	1 cut(s)	822
Psp6I	CCWGG	1 cut(s)	217
PspGI	CCWGG	1 cut(s)	217
PspN4I	GGNNCC	4 cut(s)	311, 403, 723, 859
PspPI	GGNCC	3 cut(s)	625, 722, 851
PstI	CTGCAG	2 cut(s)	253, 1054
PvuII	CAGCTG	1 cut(s)	1049
RsaI	GTAC	1 cut(s)	949
RsaNI	GTAC	1 cut(s)	948
RseI	CAYNNNNRTG	3 cut(s)	68, 480, 755
SapI	GCTCTTC	1 cut(s)	53
SaqAI	TTAA	2 cut(s)	815, 879
SatI	GCNGC	2 cut(s)	447, 1050
Sau3AI	GATC	1 cut(s)	124
Sau96I	GGNCC	3 cut(s)	625, 722, 851
SchI	GAGTC	1 cut(s)	744
ScrFI	CCNGG	2 cut(s)	219, 855
SduI	GDGCHC	4 cut(s)	84, 889, 940, 1059
SexAI	ACCWGGT	1 cut(s)	217
SfaNI	GCATC	2 cut(s)	160, 472
SfcI	CTRYAG	2 cut(s)	249, 1050
SfiI	GGCCNNNNNGGCC	1 cut(s)	721
SgrAI	CRCCGGYG	1 cut(s)	686
SinI	GGWCC	1 cut(s)	851
SmiMI	CAYNNNNRTG	3 cut(s)	68, 480, 755
SmlI	CTYRAG	2 cut(s)	87, 814
SmoI	CTYRAG	2 cut(s)	87, 814
Sse9I	AATT	8 cut(s)	7, 108, 384, 465, 580, 880, 908, 951
SsiI	CCGC	1 cut(s)	336
SspMI	CTAG	1 cut(s)	933
StyD4I	CCNGG	2 cut(s)	217, 853
StyI	CCWWGG	1 cut(s)	716
TaaI	ACNGT	4 cut(s)	121, 418, 791, 845
TaiI	ACGT	4 cut(s)	768, 825, 985, 1029
TaqI	TCGA	3 cut(s)	123, 203, 214
TasI	AATT	8 cut(s)	7, 108, 384, 465, 580, 880, 908, 951
TfiI	GAWTC	3 cut(s)	566, 653, 769
Tru1I	TTAA	2 cut(s)	815, 879
Tru9I	TTAA	2 cut(s)	815, 879
TscAI	CASTG	2 cut(s)	423, 547
TseFI	GTSAC	4 cut(s)	140, 407, 584, 862
TseI	GCWGC	2 cut(s)	446, 1049
Tsp45I	GTSAC	4 cut(s)	140, 407, 584, 862
TspDTI	ATGAA	3 cut(s)	52, 517, 910
TspGWI	ACGGA	2 cut(s)	627, 981
TspRI	CASTG	2 cut(s)	423, 547
Vha464I	CTTAAG	1 cut(s)	814
VpaK11BI	GGWCC	1 cut(s)	851
XapI	RAATTY	3 cut(s)	7, 465, 908
XmiI	GTMKAC	1 cut(s)	225
XspI	CTAG	1 cut(s)	933

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.