Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003168.1

Orthogroup ID

OG0003654

Physical Location & Seq

Genomic Coordinates Reverse (-)

34450 .. 35766

Gene Structure 1317 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003168.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1317 bp

atggcgcgtagggctctagttagaatgattgtcataattttgtatgctttcgtcactatttctcaagcggaaaatataataacagttgatcaatccggtaacggtcattacggtaaaatacaagatgctattgattctgttccgtcaaacaataaggatcctttgactatttcgatcaagcctgggacttacaaagaaagtattaccatacctccagacaagccattcataacattaagtggtactactacagaagcaagtgatgtgatgataacgtgggatcagagaggggacattgataaagttacaacatttcatgtttccgcttccgactttgtagctcgctacataacaattcaaaatacattcgggcctggtcatcaagcagttgcgctaagggtctccggcgatagaatagcgttttatgactgctcaattttaggttatcaggatactctatttgacgaaataggcaaacactactatgaaaattgttacattgaaggagttgttgattttatatttggaagcgccagttctttctttcaaaattgtcacatacattcgcctacaggaggaggatatattacagcgcaacgaagagaagcgtcaacagatagtggagggtttgtgttctttaagtgtcaaattactggcaaaggcgaaaaaacatttttaggaagaccatgggtgggatcctatgctagggtcatatttgcctacactaacatgcaagatgtgatagaaccactaggttggtctcgttattctgatggatccacagaacaagaattaatgacaaactcattttgtggacaattcaaatgcgacggacttggagcaacaacatccaacagggttaaatgggcgcgagaattcagtgagaaacaaattgcaaattttttgacaacagactttatcaatggaaaggattggataaagtctacgccggtaacaacgtcgccaccacctaaaaaggagacgccgtcattgcctccatcggtactggatacaccgccaccctcaccaccacctcccatgaagccgtctgcaccaccggtcatcccggcacctgtaatcccgtctccaccaccacaagccccggtgattccattagtttccccaccagcaccggcagtgattataactccgtggtcgcctccaccaacatacatggacggcagagctcaagaaggtgaacctatcatcatgtattattattcctcgggggcatcctcttcaatctttaaaatttgtttcagcggcatcgggacgctggctcttacctcggcagttttactatacttgtcggcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Pectinesterase

Protein Analysis

438

Amino Acids

47.75

Weight (kDa)

5.74

Isoelectric Point (pI)

47.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003654)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21610 AT2G21610
fragaria_vesca	FvH4_2g39830 FvH4_3g36820 FvH4_3g36820
malus_domestica	MD08G1029800.v1.1 MD13G1062700.v1.1 MD15G1014700.v1.1 MD15G1025000.v1.1 MD15G1025100.v1.1 MD15G1025200.v1.1
prunus_persica	Prupe.1G377100_v2.0.a1 Prupe.1G377500_v2.0.a1 Prupe.1G377600_v2.0.a1
pyrus_communis	pycom15g02160
rosa_chinensis	RchiOBHm_Chr5g0065901 RchiOBHm_Chr6g0301011
rosa_laevigata	RLG00000011285 RLG00000035826
rosa_multiflora	Rmu_sc0003168.1_g000006 Rmu_sc0006634.1_g000003 Rmu_sc0024042.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015260 Rroxscaffold_7G00167260
rosa_rugosa	Rorug05G0375500 Rorug06G0299900
rosa_samantha	Rh5AG433500 Rh5BG449700 Rh5CG472300 Rh5DG463300 Rh6AG413900 Rh6BG420800 Rh6CG428400 Rh6DG413800
rosa_wichuraiana	Rw5G040630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1145
AccB1I	GGYRCC	1 cut(s)	1069
AccI	GTMKAC	1 cut(s)	944
AccII	CGCG	2 cut(s)	7, 871
AciI	CCGC	4 cut(s)	68, 324, 1016, 1263
AclWI	GGATC	7 cut(s)	152, 165, 288, 690, 703, 771, 784
AcsI	RAATTY	3 cut(s)	875, 898, 1251
AcyI	GRCGYC	1 cut(s)	983
AfaI	GTAC	2 cut(s)	244, 1005
AfiI	CCNNNNNNNGG	3 cut(s)	575, 692, 705
AgeI	ACCGGT	1 cut(s)	1057
AgsI	TTSAA	5 cut(s)	359, 503, 548, 823, 1242
AjnI	CCWGG	2 cut(s)	181, 373
AluBI	AGCT	2 cut(s)	341, 1187
AluI	AGCT	2 cut(s)	341, 1187
Alw21I	GWGCWC	1 cut(s)	1189
Alw26I	GTCTC	4 cut(s)	406, 765, 974, 1089
AlwI	GGATC	7 cut(s)	152, 165, 288, 690, 703, 771, 784
Ama87I	CYCGRG	1 cut(s)	1225
AoxI	GGCC	2 cut(s)	371, 1311
ApoI	RAATTY	3 cut(s)	875, 898, 1251
AseI	ATTAAT	1 cut(s)	794
AsiGI	ACCGGT	1 cut(s)	1057
AspLEI	GCGC	5 cut(s)	7, 394, 533, 595, 871
AspS9I	GGNCC	1 cut(s)	371
AsuC2I	CCSGG	2 cut(s)	1067, 1103
AsuHPI	GGTGA	3 cut(s)	1017, 1117, 1208
AvaI	CYCGRG	1 cut(s)	1225
BamHI	GGATCC	3 cut(s)	157, 695, 776
BanI	GGYRCC	1 cut(s)	1069
BanII	GRGCYC	2 cut(s)	16, 1189
BbsI	GAAGAC	1 cut(s)	688
Bbv12I	GWGCWC	1 cut(s)	1189
BccI	CCATC	2 cut(s)	767, 1006
BceAI	ACGGC	3 cut(s)	970, 1030, 1195
BciT130I	CCWGG	2 cut(s)	183, 375
BciVI	GTATCC	2 cut(s)	445, 1003
BclI	TGATCA	1 cut(s)	88
BcnI	CCSGG	2 cut(s)	1067, 1103
BcoDI	GTCTC	4 cut(s)	406, 765, 974, 1089
BfaI	CTAG	3 cut(s)	17, 705, 752
BfmI	CTRYAG	2 cut(s)	249, 570
BfoI	RGCGCY	1 cut(s)	534
BfuI	GTATCC	2 cut(s)	445, 1003
BisI	GCNGC	1 cut(s)	1264
BlsI	GCNGC	1 cut(s)	1265
Bme1390I	CCNGG	4 cut(s)	183, 375, 1067, 1103
BmeT110I	CYCGRG	1 cut(s)	1225
BmgT120I	GGNCC	1 cut(s)	371
BmiI	GGNNCC	4 cut(s)	159, 697, 778, 1071
BmrFI	CCNGG	4 cut(s)	183, 375, 1067, 1103
BmsI	GCATC	3 cut(s)	115, 1241, 1275
BpiI	GAAGAC	1 cut(s)	688
BpmI	CTGGAG	1 cut(s)	198
Bpu10I	CCTNAGC	1 cut(s)	395
BpuEI	CTTGAG	2 cut(s)	48, 1173
BpuMI	CCSGG	2 cut(s)	1067, 1103
BsaHI	GRCGYC	1 cut(s)	983
BsaI	GGTCTC	2 cut(s)	406, 765
BsaJI	CCNNGG	6 cut(s)	182, 686, 1101, 1151, 1224, 1287
BsaWI	WCCGGW	2 cut(s)	95, 1057
BsaXI	ACNNNNNCTCC	6 cut(s)	196, 226, 615, 645, 971, 1001
Bsc4I	CCNNNNNNNGG	3 cut(s)	575, 692, 705
Bse118I	RCCGGY	3 cut(s)	949, 1057, 1132
Bse1I	ACTGG	3 cut(s)	534, 658, 1011
Bse3DI	GCAATG	1 cut(s)	989
BseBI	CCWGG	2 cut(s)	183, 375
BseDI	CCNNGG	6 cut(s)	182, 686, 1101, 1151, 1224, 1287
BseGI	GGATG	3 cut(s)	848, 1062, 1232
BseLI	CCNNNNNNNGG	3 cut(s)	575, 692, 705
BseMI	GCAATG	1 cut(s)	989
BseNI	ACTGG	3 cut(s)	534, 658, 1011
BseRI	GAGGAG	1 cut(s)	591
BsgI	GTGCAG	1 cut(s)	1035
Bsh1236I	CGCG	2 cut(s)	7, 871
BshFI	GGCC	2 cut(s)	373, 1313
BshNI	GGYRCC	1 cut(s)	1069
BshTI	ACCGGT	1 cut(s)	1057
BsiHKAI	GWGCWC	1 cut(s)	1189
BsiHKCI	CYCGRG	1 cut(s)	1225
BsiSI	CCGG	7 cut(s)	96, 405, 950, 1058, 1067, 1103, 1133
BslFI	GGGAC	3 cut(s)	199, 305, 1285
BslI	CCNNNNNNNGG	3 cut(s)	575, 692, 705
BsmAI	GTCTC	4 cut(s)	406, 765, 974, 1089
BsmBI	CGTCTC	2 cut(s)	974, 1089
BsmFI	GGGAC	3 cut(s)	199, 305, 1285
BsnI	GGCC	2 cut(s)	373, 1313
Bso31I	GGTCTC	2 cut(s)	406, 765
BsoBI	CYCGRG	1 cut(s)	1225
Bsp1286I	GDGCHC	2 cut(s)	16, 1189
Bsp143I	GATC	6 cut(s)	88, 157, 174, 280, 695, 776
Bsp19I	CCATGG	1 cut(s)	686
BspACI	CCGC	4 cut(s)	68, 324, 1016, 1263
BspANI	GGCC	2 cut(s)	373, 1313
BspFNI	CGCG	2 cut(s)	7, 871
BspLI	GGNNCC	4 cut(s)	159, 697, 778, 1071
BspPI	GGATC	7 cut(s)	152, 165, 288, 690, 703, 771, 784
BspT107I	GGYRCC	1 cut(s)	1069
BspTNI	GGTCTC	2 cut(s)	406, 765
BsrDI	GCAATG	1 cut(s)	989
BsrFI	RCCGGY	3 cut(s)	949, 1057, 1132
BsrI	ACTGG	3 cut(s)	534, 658, 1011
BssAI	RCCGGY	3 cut(s)	949, 1057, 1132
BssECI	CCNNGG	6 cut(s)	182, 686, 1101, 1151, 1224, 1287
BssMI	GATC	6 cut(s)	88, 157, 174, 280, 695, 776
BssNI	GRCGYC	1 cut(s)	983
BssT1I	CCWWGG	1 cut(s)	686
Bst2UI	CCWGG	2 cut(s)	183, 375
Bst4CI	ACNGT	3 cut(s)	85, 104, 113
Bst6I	CTCTTC	2 cut(s)	595, 1243
BstACI	GRCGYC	1 cut(s)	983
BstC8I	GCNNGC	2 cut(s)	343, 1278
BstDEI	CTNAG	1 cut(s)	395
BstDSI	CCRYGG	2 cut(s)	686, 1151
BstENI	CCTNNNNNAGG	2 cut(s)	573, 703
BstF5I	GGATG	3 cut(s)	848, 1062, 1232
BstFNI	CGCG	2 cut(s)	7, 871
BstH2I	RGCGCY	1 cut(s)	534
BstHHI	GCGC	5 cut(s)	7, 394, 533, 595, 871
BstKTI	GATC	6 cut(s)	91, 160, 177, 283, 698, 779
BstMAI	GTCTC	4 cut(s)	406, 765, 974, 1089
BstMBI	GATC	6 cut(s)	88, 157, 174, 280, 695, 776
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 991
BstNI	CCWGG	2 cut(s)	183, 375
BstNSI	RCATGY	1 cut(s)	733
BstSCI	CCNGG	4 cut(s)	181, 373, 1065, 1101
BstSFI	CTRYAG	2 cut(s)	249, 570
BstUI	CGCG	2 cut(s)	7, 871
BstV2I	GAAGAC	1 cut(s)	688
BstX2I	RGATCY	3 cut(s)	157, 695, 776
BstXI	CCANNNNNNTGG	1 cut(s)	756
BstYI	RGATCY	3 cut(s)	157, 695, 776
BsuI	GTATCC	2 cut(s)	445, 1003
BsuRI	GGCC	2 cut(s)	373, 1313
BtgI	CCRYGG	2 cut(s)	686, 1151
BtsCI	GGATG	3 cut(s)	848, 1062, 1232
BtsI	GCAGTG	1 cut(s)	1143
BtsIMutI	CAGTG	2 cut(s)	886, 1143
Cac8I	GCNNGC	2 cut(s)	343, 1278
CfoI	GCGC	5 cut(s)	7, 394, 533, 595, 871
Cfr10I	RCCGGY	3 cut(s)	949, 1057, 1132
Cfr13I	GGNCC	1 cut(s)	371
CseI	GACGC	3 cut(s)	597, 991, 1282
Csp6I	GTAC	2 cut(s)	243, 1004
CspAI	ACCGGT	1 cut(s)	1057
CviAII	CATG	6 cut(s)	317, 687, 730, 1039, 1174, 1210
CviQI	GTAC	2 cut(s)	243, 1004
DdeI	CTNAG	1 cut(s)	395
DpnI	GATC	6 cut(s)	90, 159, 176, 282, 697, 778
DpnII	GATC	6 cut(s)	88, 157, 174, 280, 695, 776
DraI	TTTAAA	1 cut(s)	1249
Eam1104I	CTCTTC	2 cut(s)	595, 1243
EarI	CTCTTC	2 cut(s)	595, 1243
Ecl136II	GAGCTC	1 cut(s)	1187
Eco130I	CCWWGG	1 cut(s)	686
Eco24I	GRGCYC	2 cut(s)	16, 1189
Eco31I	GGTCTC	2 cut(s)	406, 765
Eco53kI	GAGCTC	1 cut(s)	1187
Eco88I	CYCGRG	1 cut(s)	1225
EcoICRI	GAGCTC	1 cut(s)	1187
EcoNI	CCTNNNNNAGG	2 cut(s)	573, 703
EcoRI	GAATTC	1 cut(s)	875
EcoRII	CCWGG	2 cut(s)	181, 373
EcoT14I	CCWWGG	1 cut(s)	686
EcoT38I	GRGCYC	2 cut(s)	16, 1189
ErhI	CCWWGG	1 cut(s)	686
Esp3I	CGTCTC	2 cut(s)	974, 1089
FaeI	CATG	6 cut(s)	320, 690, 733, 1042, 1177, 1213
FaqI	GGGAC	3 cut(s)	199, 305, 1285
FatI	CATG	6 cut(s)	316, 686, 729, 1038, 1173, 1209
FbaI	TGATCA	1 cut(s)	88
FblI	GTMKAC	1 cut(s)	944
Fnu4HI	GCNGC	1 cut(s)	1264
FokI	GGATG	3 cut(s)	835, 1049, 1219
FriOI	GRGCYC	2 cut(s)	16, 1189
Fsp4HI	GCNGC	1 cut(s)	1264
FspBI	CTAG	3 cut(s)	17, 705, 752
GlaI	GCGC	5 cut(s)	6, 393, 532, 594, 870
GluI	GCNGC	1 cut(s)	1264
GsuI	CTGGAG	1 cut(s)	198
HaeII	RGCGCY	1 cut(s)	534
HaeIII	GGCC	2 cut(s)	373, 1313
HapII	CCGG	7 cut(s)	96, 405, 950, 1058, 1067, 1103, 1133
HgaI	GACGC	3 cut(s)	597, 991, 1282
HhaI	GCGC	5 cut(s)	7, 394, 533, 595, 871
Hin1I	GRCGYC	1 cut(s)	983
Hin1II	CATG	6 cut(s)	320, 690, 733, 1042, 1177, 1213
Hin6I	GCGC	5 cut(s)	5, 392, 531, 593, 869
HinP1I	GCGC	5 cut(s)	5, 392, 531, 593, 869
HincII	GTYRAC	1 cut(s)	612
HindII	GTYRAC	1 cut(s)	612
HinfI	GANTC	2 cut(s)	134, 1108
HpaII	CCGG	7 cut(s)	96, 405, 950, 1058, 1067, 1103, 1133
HphI	GGTGA	3 cut(s)	1017, 1117, 1208
Hpy166II	GTNNAC	4 cut(s)	612, 815, 945, 1199
Hpy188I	TCNGA	3 cut(s)	285, 331, 772
Hpy188III	TCNNGA	4 cut(s)	215, 449, 1190, 1270
Hpy8I	GTNNAC	4 cut(s)	612, 815, 945, 1199
Hpy99I	CGWCG	2 cut(s)	833, 964
HpyAV	CCTTC	2 cut(s)	497, 1187
HpyCH4III	ACNGT	3 cut(s)	85, 104, 113
HpyCH4IV	ACGT	2 cut(s)	275, 959
HpyCH4V	TGCA	3 cut(s)	733, 896, 1052
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 991
HpyF3I	CTNAG	1 cut(s)	395
HpySE526I	ACGT	2 cut(s)	275, 959
Hsp92I	GRCGYC	1 cut(s)	983
Hsp92II	CATG	6 cut(s)	320, 690, 733, 1042, 1177, 1213
HspAI	GCGC	5 cut(s)	5, 392, 531, 593, 869
Ksp22I	TGATCA	1 cut(s)	88
Kzo9I	GATC	6 cut(s)	88, 157, 174, 280, 695, 776
LmnI	GCTCC	1 cut(s)	839
LweI	GCATC	3 cut(s)	115, 1241, 1275
MaeI	CTAG	3 cut(s)	17, 705, 752
MaeII	ACGT	2 cut(s)	275, 959
MaeIII	GTNAC	6 cut(s)	52, 98, 304, 494, 554, 952
MalI	GATC	6 cut(s)	90, 159, 176, 282, 697, 778
MboI	GATC	6 cut(s)	88, 157, 174, 280, 695, 776
MboII	GAAGA	3 cut(s)	612, 693, 1230
MflI	RGATCY	3 cut(s)	157, 695, 776
MhlI	GDGCHC	2 cut(s)	16, 1189
MmeI	TCCRAC	2 cut(s)	354, 876
MseI	TTAA	5 cut(s)	236, 639, 794, 861, 1248
MslI	CAYNNNNRTG	2 cut(s)	483, 728
MspA1I	CMGCKG	1 cut(s)	1263
MspI	CCGG	7 cut(s)	96, 405, 950, 1058, 1067, 1103, 1133
MspR9I	CCNGG	4 cut(s)	183, 375, 1067, 1103
MvaI	CCWGG	2 cut(s)	183, 375
MvnI	CGCG	2 cut(s)	7, 871
MwoI	GCNNNNNNNGC	2 cut(s)	11, 991
NciI	CCSGG	2 cut(s)	1067, 1103
NcoI	CCATGG	1 cut(s)	686
NdeII	GATC	6 cut(s)	88, 157, 174, 280, 695, 776
NlaIII	CATG	6 cut(s)	320, 690, 733, 1042, 1177, 1213
NlaIV	GGNNCC	4 cut(s)	159, 697, 778, 1071
NmeAIII	GCCGAG	1 cut(s)	1268
NmuCI	GTSAC	2 cut(s)	52, 554
NspI	RCATGY	1 cut(s)	733
PfeI	GAWTC	2 cut(s)	134, 1108
PflFI	GACNNNGTC	1 cut(s)	985
PinAI	ACCGGT	1 cut(s)	1057
PkrI	GCNGC	1 cut(s)	1265
PshBI	ATTAAT	1 cut(s)	794
PsiI	TTATAA	1 cut(s)	1145
Psp124BI	GAGCTC	1 cut(s)	1189
Psp6I	CCWGG	2 cut(s)	181, 373
PspGI	CCWGG	2 cut(s)	181, 373
PspN4I	GGNNCC	4 cut(s)	159, 697, 778, 1071
PspPI	GGNCC	1 cut(s)	371
PsuI	RGATCY	3 cut(s)	157, 695, 776
PsyI	GACNNNGTC	1 cut(s)	985
RsaI	GTAC	2 cut(s)	244, 1005
RsaNI	GTAC	2 cut(s)	243, 1004
RseI	CAYNNNNRTG	2 cut(s)	483, 728
SacI	GAGCTC	1 cut(s)	1189
SaqAI	TTAA	5 cut(s)	236, 639, 794, 861, 1248
SatI	GCNGC	1 cut(s)	1264
Sau3AI	GATC	6 cut(s)	88, 157, 174, 280, 695, 776
Sau96I	GGNCC	1 cut(s)	371
ScrFI	CCNGG	4 cut(s)	183, 375, 1067, 1103
SduI	GDGCHC	2 cut(s)	16, 1189
SfaNI	GCATC	3 cut(s)	115, 1241, 1275
SfcI	CTRYAG	2 cut(s)	249, 570
SmiMI	CAYNNNNRTG	2 cut(s)	483, 728
SmlI	CTYRAG	2 cut(s)	63, 1188
SmoI	CTYRAG	2 cut(s)	63, 1188
SsiI	CCGC	4 cut(s)	68, 324, 1016, 1263
SspMI	CTAG	3 cut(s)	17, 705, 752
SstI	GAGCTC	1 cut(s)	1189
StyD4I	CCNGG	4 cut(s)	181, 373, 1065, 1101
StyI	CCWWGG	1 cut(s)	686
TaaI	ACNGT	3 cut(s)	85, 104, 113
TaiI	ACGT	2 cut(s)	278, 962
TaqI	TCGA	1 cut(s)	173
TauI	GCSGC	1 cut(s)	1266
TfiI	GAWTC	2 cut(s)	134, 1108
Tru1I	TTAA	5 cut(s)	236, 639, 794, 861, 1248
Tru9I	TTAA	5 cut(s)	236, 639, 794, 861, 1248
TscAI	CASTG	2 cut(s)	886, 1143
TseFI	GTSAC	2 cut(s)	52, 554
Tsp45I	GTSAC	2 cut(s)	52, 554
TspDTI	ATGAA	4 cut(s)	217, 305, 501, 1055
TspGWI	ACGGA	3 cut(s)	132, 846, 1140
TspRI	CASTG	2 cut(s)	886, 1143
Tth111I	GACNNNGTC	1 cut(s)	985
VspI	ATTAAT	1 cut(s)	794
XagI	CCTNNNNNAGG	2 cut(s)	573, 703
XapI	RAATTY	3 cut(s)	875, 898, 1251
XceI	RCATGY	1 cut(s)	733
XmiI	GTMKAC	1 cut(s)	944
XspI	CTAG	3 cut(s)	17, 705, 752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.