Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006634.1

Orthogroup ID

OG0003654

Physical Location & Seq

Genomic Coordinates Forward (+)

11401 .. 12621

Gene Structure 1221 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006634.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

atggttcgtggtacttttatgatgaacttggtattcatagctttgtatgctttcatggctatttcaaattctcaagccgaaggcacgagtacttcagcgattctcataacagttgaccaatcgggcaaaggtgattacaagaaaatacaagaagccattgattcagtggcgtcgaacaacgcagagctcgtgtttattagggttaagcccggagtatatgtagaaaaagttatggttccggcggacaagccgtttataaccttaagtggcacaaaggcagctgacacggttataacatggaacgatagtggggacatattcgagtctccaactttctctgtcctggcctctgatttcatagggcgttacctcacaattcagaatacatatggagctggtgtgaaagcggtggcattacgggtgtctggagatagagcagcattctatgggtgcagaattttgtctcatcaagacaccctcctagatgatactgggaggcactactacaacaactgttacattgaaggagatgtagacttcatatgtggaaatgctgcttctttctttgagaagtgccatttgcattctctttcggtaggaaccggggccataacggcccaacggagaatgtccccggctgaggacaccgggttcatgttcttcgggtgcaagatcaccggtgtcaaaacagcagtgttgggaaggccttggggtacatattcaagagtggtctttgccttcacttacatgactagcgccatactgccacaaggttgggacgattggggaaactcagccgaccaattaagaaccgtatactatgggcagtataaatgttctggacggggagcaactacatcgaaacgagtagaatgggcacgcgaccttacgagcgaagaagtcgaacccttcttgactaaggacatgattgatgccaatgcttggttaaggtcagcaccaaccagtttcaagaagaaagcactcagtgccaatgacaccaaaaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Pectinesterase

Protein Analysis

335

Amino Acids

36.82

Weight (kDa)

6.89

Isoelectric Point (pI)

28.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003654)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21610 AT2G21610
fragaria_vesca	FvH4_2g39830 FvH4_3g36820 FvH4_3g36820
malus_domestica	MD08G1029800.v1.1 MD13G1062700.v1.1 MD15G1014700.v1.1 MD15G1025000.v1.1 MD15G1025100.v1.1 MD15G1025200.v1.1
prunus_persica	Prupe.1G377100_v2.0.a1 Prupe.1G377500_v2.0.a1 Prupe.1G377600_v2.0.a1
pyrus_communis	pycom15g02160
rosa_chinensis	RchiOBHm_Chr5g0065901 RchiOBHm_Chr6g0301011
rosa_laevigata	RLG00000011285 RLG00000035826
rosa_multiflora	Rmu_sc0003168.1_g000006 Rmu_sc0006634.1_g000003 Rmu_sc0024042.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015260 Rroxscaffold_7G00167260
rosa_rugosa	Rorug05G0375500 Rorug06G0299900
rosa_samantha	Rh5AG433500 Rh5BG449700 Rh5CG472300 Rh5DG463300 Rh6AG413900 Rh6BG420800 Rh6CG428400 Rh6DG413800
rosa_wichuraiana	Rw5G040630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	257, 293
AccB7I	CCANNNNNTGG	1 cut(s)	942
AccI	GTMKAC	2 cut(s)	534, 816
AccII	CGCG	1 cut(s)	882
AciI	CCGC	2 cut(s)	242, 407
AcsI	RAATTY	2 cut(s)	67, 456
AcuI	CTGAAG	1 cut(s)	78
AcyI	GRCGYC	1 cut(s)	170
AdeI	CACNNNGTG	1 cut(s)	986
AfaI	GTAC	3 cut(s)	13, 91, 715
AfiI	CCNNNNNNNGG	2 cut(s)	640, 942
AflII	CTTAAG	1 cut(s)	262
AgeI	ACCGGT	1 cut(s)	677
AgsI	TTSAA	4 cut(s)	66, 524, 723, 970
AjnI	CCWGG	1 cut(s)	342
AloI	GAACNNNNNNTCC	2 cut(s)	635, 667
AluBI	AGCT	4 cut(s)	41, 187, 281, 395
AluI	AGCT	4 cut(s)	41, 187, 281, 395
Alw21I	GWGCWC	1 cut(s)	189
Alw26I	GTCTC	2 cut(s)	330, 468
AoxI	GGCC	4 cut(s)	345, 606, 615, 704
ApeKI	GCWGC	3 cut(s)	278, 437, 554
ApoI	RAATTY	2 cut(s)	67, 456
AsiGI	ACCGGT	1 cut(s)	677
AspLEI	GCGC	1 cut(s)	758
AspS9I	GGNCC	2 cut(s)	606, 616
AsuC2I	CCSGG	4 cut(s)	210, 604, 635, 649
AsuHPI	GGTGA	2 cut(s)	143, 667
BaeGI	GKGCMC	1 cut(s)	880
BanII	GRGCYC	1 cut(s)	189
BauI	CACGAG	2 cut(s)	85, 188
Bbv12I	GWGCWC	1 cut(s)	189
BbvCI	CCTCAGC	1 cut(s)	639
BbvI	GCAGC	3 cut(s)	290, 449, 541
BceAI	ACGGC	2 cut(s)	235, 630
BcgI	CGANNNNNNTGC	2 cut(s)	840, 874
BciT130I	CCWGG	1 cut(s)	344
BcnI	CCSGG	4 cut(s)	210, 604, 635, 649
BcoDI	GTCTC	2 cut(s)	330, 468
BfaI	CTAG	2 cut(s)	482, 753
BfoI	RGCGCY	1 cut(s)	759
BfrI	CTTAAG	1 cut(s)	262
BglI	GCCNNNNNGGC	1 cut(s)	614
BisI	GCNGC	3 cut(s)	279, 438, 555
BlsI	GCNGC	3 cut(s)	280, 439, 556
BmcAI	AGTACT	1 cut(s)	91
Bme1390I	CCNGG	5 cut(s)	210, 344, 604, 635, 649
BmgT120I	GGNCC	2 cut(s)	606, 616
BmiI	GGNNCC	3 cut(s)	237, 601, 607
BmrFI	CCNGG	5 cut(s)	210, 344, 604, 635, 649
BmrI	ACTGGG	1 cut(s)	501
BmsI	GCATC	1 cut(s)	922
BmuI	ACTGGG	1 cut(s)	501
BpmI	CTGGAG	1 cut(s)	447
Bpu10I	CCTNAGC	1 cut(s)	639
BpuEI	CTTGAG	1 cut(s)	57
BpuMI	CCSGG	4 cut(s)	210, 604, 635, 649
BsaHI	GRCGYC	1 cut(s)	170
BsaJI	CCNNGG	3 cut(s)	603, 633, 707
BsaWI	WCCGGW	1 cut(s)	677
BsaXI	ACNNNNNCTCC	4 cut(s)	204, 234, 384, 414
Bsc4I	CCNNNNNNNGG	2 cut(s)	640, 942
Bse118I	RCCGGY	1 cut(s)	677
Bse1I	ACTGG	2 cut(s)	496, 963
BseBI	CCWGG	1 cut(s)	344
BseDI	CCNNGG	3 cut(s)	603, 633, 707
BseLI	CCNNNNNNNGG	2 cut(s)	640, 942
BseMII	CTCAG	3 cut(s)	630, 807, 997
BseNI	ACTGG	2 cut(s)	496, 963
BseSI	GKGCMC	1 cut(s)	880
BseXI	GCAGC	3 cut(s)	290, 449, 541
BsgI	GTGCAG	1 cut(s)	472
Bsh1236I	CGCG	1 cut(s)	882
BshFI	GGCC	4 cut(s)	347, 608, 617, 706
BshTI	ACCGGT	1 cut(s)	677
BsiHKAI	GWGCWC	1 cut(s)	189
BsiSI	CCGG	6 cut(s)	210, 239, 603, 635, 648, 678
BslFI	GGGAC	3 cut(s)	326, 616, 791
BslI	CCNNNNNNNGG	2 cut(s)	640, 942
BsmAI	GTCTC	2 cut(s)	330, 468
BsmFI	GGGAC	3 cut(s)	326, 616, 791
BsmI	GAATGC	2 cut(s)	440, 583
BsnI	GGCC	4 cut(s)	347, 608, 617, 706
Bsp1286I	GDGCHC	2 cut(s)	189, 880
Bsp143I	GATC	1 cut(s)	672
BspACI	CCGC	2 cut(s)	242, 407
BspANI	GGCC	4 cut(s)	347, 608, 617, 706
BspCNI	CTCAG	3 cut(s)	631, 806, 996
BspFNI	CGCG	1 cut(s)	882
BspLI	GGNNCC	3 cut(s)	237, 601, 607
BspTI	CTTAAG	1 cut(s)	262
BsrFI	RCCGGY	1 cut(s)	677
BsrI	ACTGG	2 cut(s)	496, 963
BssAI	RCCGGY	1 cut(s)	677
BssECI	CCNNGG	3 cut(s)	603, 633, 707
BssMI	GATC	1 cut(s)	672
BssNAI	GTATAC	1 cut(s)	817
BssNI	GRCGYC	1 cut(s)	170
BssSI	CACGAG	2 cut(s)	85, 188
BssT1I	CCWWGG	1 cut(s)	707
Bst1107I	GTATAC	1 cut(s)	817
Bst2BI	CACGAG	2 cut(s)	85, 188
Bst2UI	CCWGG	1 cut(s)	344
Bst4CI	ACNGT	4 cut(s)	112, 289, 515, 814
BstACI	GRCGYC	1 cut(s)	170
BstAFI	CTTAAG	1 cut(s)	262
BstAPI	GCANNNNNTGC	1 cut(s)	986
BstC8I	GCNNGC	1 cut(s)	880
BstDEI	CTNAG	4 cut(s)	639, 793, 918, 983
BstFNI	CGCG	1 cut(s)	882
BstH2I	RGCGCY	1 cut(s)	759
BstHHI	GCGC	1 cut(s)	758
BstKTI	GATC	1 cut(s)	675
BstMAI	GTCTC	2 cut(s)	330, 468
BstMBI	GATC	1 cut(s)	672
BstMWI	GCNNNNNNNGC	4 cut(s)	47, 56, 614, 986
BstNI	CCWGG	1 cut(s)	344
BstSCI	CCNGG	5 cut(s)	208, 342, 602, 633, 647
BstSLI	GKGCMC	1 cut(s)	880
BstUI	CGCG	1 cut(s)	882
BstV1I	GCAGC	3 cut(s)	290, 449, 541
BstXI	CCANNNNNNTGG	1 cut(s)	774
BstZ17I	GTATAC	1 cut(s)	817
BsuRI	GGCC	4 cut(s)	347, 608, 617, 706
BtsI	GCAGTG	1 cut(s)	699
BtsIMutI	CAGTG	3 cut(s)	171, 699, 991
Cac8I	GCNNGC	1 cut(s)	880
CfoI	GCGC	1 cut(s)	758
Cfr10I	RCCGGY	1 cut(s)	677
Cfr13I	GGNCC	2 cut(s)	606, 616
CseI	GACGC	1 cut(s)	159
Csp6I	GTAC	3 cut(s)	12, 90, 714
CspAI	ACCGGT	1 cut(s)	677
CviAII	CATG	5 cut(s)	55, 297, 655, 748, 925
CviQI	GTAC	3 cut(s)	12, 90, 714
DdeI	CTNAG	4 cut(s)	639, 793, 918, 983
DpnI	GATC	1 cut(s)	674
DpnII	GATC	1 cut(s)	672
DraIII	CACNNNGTG	1 cut(s)	986
EciI	GGCGGA	1 cut(s)	257
Ecl136II	GAGCTC	1 cut(s)	187
Eco130I	CCWWGG	1 cut(s)	707
Eco147I	AGGCCT	1 cut(s)	706
Eco24I	GRGCYC	1 cut(s)	189
Eco53kI	GAGCTC	1 cut(s)	187
Eco57I	CTGAAG	1 cut(s)	78
EcoICRI	GAGCTC	1 cut(s)	187
EcoRII	CCWGG	1 cut(s)	342
EcoT14I	CCWWGG	1 cut(s)	707
EcoT38I	GRGCYC	1 cut(s)	189
ErhI	CCWWGG	1 cut(s)	707
FaeI	CATG	5 cut(s)	58, 300, 658, 751, 928
FaqI	GGGAC	3 cut(s)	326, 616, 791
FatI	CATG	5 cut(s)	54, 296, 654, 747, 924
FauNDI	CATATG	2 cut(s)	388, 542
FblI	GTMKAC	2 cut(s)	534, 816
Fnu4HI	GCNGC	3 cut(s)	279, 438, 555
FriOI	GRGCYC	1 cut(s)	189
Fsp4HI	GCNGC	3 cut(s)	279, 438, 555
FspBI	CTAG	2 cut(s)	482, 753
GlaI	GCGC	1 cut(s)	757
GluI	GCNGC	3 cut(s)	279, 438, 555
GsuI	CTGGAG	1 cut(s)	447
HaeII	RGCGCY	1 cut(s)	759
HaeIII	GGCC	4 cut(s)	347, 608, 617, 706
HapII	CCGG	6 cut(s)	210, 239, 603, 635, 648, 678
HgaI	GACGC	1 cut(s)	159
HhaI	GCGC	1 cut(s)	758
Hin1I	GRCGYC	1 cut(s)	170
Hin1II	CATG	5 cut(s)	58, 300, 658, 751, 928
Hin6I	GCGC	1 cut(s)	756
HinP1I	GCGC	1 cut(s)	756
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HinfI	GANTC	3 cut(s)	100, 161, 323
HpaII	CCGG	6 cut(s)	210, 239, 603, 635, 648, 678
HphI	GGTGA	2 cut(s)	143, 667
Hpy166II	GTNNAC	3 cut(s)	115, 535, 817
Hpy188I	TCNGA	2 cut(s)	352, 381
Hpy188III	TCNNGA	6 cut(s)	426, 470, 723, 840, 913, 970
Hpy8I	GTNNAC	3 cut(s)	115, 535, 817
Hpy99I	CGWCG	1 cut(s)	175
HpyAV	CCTTC	5 cut(s)	74, 518, 696, 748, 919
HpyCH4III	ACNGT	4 cut(s)	112, 289, 515, 814
HpyCH4V	TGCA	3 cut(s)	453, 583, 669
HpyF10VI	GCNNNNNNNGC	4 cut(s)	47, 56, 614, 986
HpyF3I	CTNAG	4 cut(s)	639, 793, 918, 983
Hsp92I	GRCGYC	1 cut(s)	170
Hsp92II	CATG	5 cut(s)	58, 300, 658, 751, 928
HspAI	GCGC	1 cut(s)	756
Kzo9I	GATC	1 cut(s)	672
LmnI	GCTCC	2 cut(s)	392, 848
Lsp1109I	GCAGC	3 cut(s)	290, 449, 541
LweI	GCATC	1 cut(s)	922
MaeI	CTAG	2 cut(s)	482, 753
MaeIII	GTNAC	2 cut(s)	365, 515
MalI	GATC	1 cut(s)	674
MboI	GATC	1 cut(s)	672
MboII	GAAGA	3 cut(s)	652, 908, 985
MhlI	GDGCHC	2 cut(s)	189, 880
MluCI	AATT	5 cut(s)	67, 375, 456, 803, 1003
MlyI	GAGTC	1 cut(s)	332
MmeI	TCCRAC	1 cut(s)	353
MnlI	CCTC	5 cut(s)	358, 380, 488, 489, 634
MseI	TTAA	5 cut(s)	204, 263, 806, 947, 1006
MslI	CAYNNNNRTG	1 cut(s)	746
MspA1I	CMGCKG	1 cut(s)	281
MspCI	CTTAAG	1 cut(s)	262
MspI	CCGG	6 cut(s)	210, 239, 603, 635, 648, 678
MspR9I	CCNGG	5 cut(s)	210, 344, 604, 635, 649
Mva1269I	GAATGC	2 cut(s)	440, 583
MvaI	CCWGG	1 cut(s)	344
MvnI	CGCG	1 cut(s)	882
MwoI	GCNNNNNNNGC	4 cut(s)	47, 56, 614, 986
NciI	CCSGG	4 cut(s)	210, 604, 635, 649
NdeI	CATATG	2 cut(s)	388, 542
NdeII	GATC	1 cut(s)	672
NlaIII	CATG	5 cut(s)	58, 300, 658, 751, 928
NlaIV	GGNNCC	3 cut(s)	237, 601, 607
PceI	AGGCCT	1 cut(s)	706
PcsI	WCGNNNNNNNCGW	1 cut(s)	186
PctI	GAATGC	2 cut(s)	440, 583
PfeI	GAWTC	2 cut(s)	100, 161
PflMI	CCANNNNNTGG	1 cut(s)	942
PinAI	ACCGGT	1 cut(s)	677
PkrI	GCNGC	3 cut(s)	280, 439, 556
PleI	GAGTC	1 cut(s)	331
PpsI	GAGTC	1 cut(s)	331
PsiI	TTATAA	2 cut(s)	257, 293
Psp124BI	GAGCTC	1 cut(s)	189
Psp6I	CCWGG	1 cut(s)	342
PspGI	CCWGG	1 cut(s)	342
PspN4I	GGNNCC	3 cut(s)	237, 601, 607
PspPI	GGNCC	2 cut(s)	606, 616
PvuII	CAGCTG	1 cut(s)	281
RsaI	GTAC	3 cut(s)	13, 91, 715
RsaNI	GTAC	3 cut(s)	12, 90, 714
RseI	CAYNNNNRTG	1 cut(s)	746
SacI	GAGCTC	1 cut(s)	189
SaqAI	TTAA	5 cut(s)	204, 263, 806, 947, 1006
SatI	GCNGC	3 cut(s)	279, 438, 555
Sau3AI	GATC	1 cut(s)	672
Sau96I	GGNCC	2 cut(s)	606, 616
ScaI	AGTACT	1 cut(s)	91
SchI	GAGTC	1 cut(s)	332
ScrFI	CCNGG	5 cut(s)	210, 344, 604, 635, 649
SduI	GDGCHC	2 cut(s)	189, 880
SfaNI	GCATC	1 cut(s)	922
SfiI	GGCCNNNNNGGCC	1 cut(s)	614
SgrAI	CRCCGGYG	1 cut(s)	677
SmiMI	CAYNNNNRTG	1 cut(s)	746
SmlI	CTYRAG	2 cut(s)	72, 262
SmoI	CTYRAG	2 cut(s)	72, 262
Sse9I	AATT	5 cut(s)	67, 375, 456, 803, 1003
SseBI	AGGCCT	1 cut(s)	706
SsiI	CCGC	2 cut(s)	242, 407
SspMI	CTAG	2 cut(s)	482, 753
SstI	GAGCTC	1 cut(s)	189
StuI	AGGCCT	1 cut(s)	706
StyD4I	CCNGG	5 cut(s)	208, 342, 602, 633, 647
StyI	CCWWGG	1 cut(s)	707
TaaI	ACNGT	4 cut(s)	112, 289, 515, 814
TaqI	TCGA	4 cut(s)	173, 321, 860, 903
TasI	AATT	5 cut(s)	67, 375, 456, 803, 1003
TatI	WGTACW	1 cut(s)	89
TfiI	GAWTC	2 cut(s)	100, 161
Tru1I	TTAA	5 cut(s)	204, 263, 806, 947, 1006
Tru9I	TTAA	5 cut(s)	204, 263, 806, 947, 1006
TscAI	CASTG	3 cut(s)	171, 699, 991
TseI	GCWGC	3 cut(s)	278, 437, 554
TspDTI	ATGAA	6 cut(s)	25, 38, 43, 346, 529, 643
TspGWI	ACGGA	1 cut(s)	637
TspRI	CASTG	3 cut(s)	171, 699, 991
Van91I	CCANNNNNTGG	1 cut(s)	942
Vha464I	CTTAAG	1 cut(s)	262
XapI	RAATTY	2 cut(s)	67, 456
XcmI	CCANNNNNNNNNTGG	1 cut(s)	163
XmiI	GTMKAC	2 cut(s)	534, 816
XspI	CTAG	2 cut(s)	482, 753
ZrmI	AGTACT	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.