Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001242

Physical Location & Seq

Genomic Coordinates Forward (+)

45194147 .. 45197460

Gene Structure 3314 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0299900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGAACATCTTCTCCAAGAAGCCAAACGCCAAAGAGGCGCTTCGGGAAAGCAAGAGAGAAATGACTAATGCTACTAGAGGGATAGAGAAGGAAATTGGAGCATTGCAATTAGAAGAAAAAAAGCTCGTTGCTGAGATAAAGAGAACTGCTAAAACAGGAAATGAGGCAGCAACTAAAATACTGGCCAGGCAGCTAATCAGGCTTAGGCAACAGGTAGCTAACTTACAAGGAAGTAGGGCTCAAATGAGAGGAATAGCAACTCATACACAGGCAATGCACGCACAGTCATCAGTTGCTGTTGGCATGAAAGGTGCTAGTAAGGCAATGGCAGCTATGAATAAGCAAATGGATCCTGCAAAGCAAGCAAAGGTGATACGTGACTTTCAGAAGCAGTCTGCACAGATGGATATGACTACTGAAATGATGTCTGACACTATAGATGATGCCATAGATAGTGATGAGGCAGAAGAGGAAACTGAGGAGCTGACAAACCAGGTGCTAGATGAAATTGGTGTCGATGTTGCCTCACAGTTGTCAGCAGCTCCAAAAGGAAGAATTGCAGCAAAGAACTCTCAGGGTGTTGGCAGTTCTAGCACTGACGAGCTGGAGAAAAGATTGGCAGCTCTCAGAAATCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

212

Amino Acids

23.1

Weight (kDa)

8.75

Isoelectric Point (pI)

49.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Snf7	PF03357	16 - 185	1.2e-41	Snf7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19400 AT1G19400 AT1G19400 AT1G19400 AT1G75180 AT1G75180 AT1G75180 AT1G75180
fragaria_vesca	FvH4_2g08760 FvH4_2g39840 FvH4_2g39840 FvH4_2g39840
malus_domestica	MD08G1032000.v1.1 MD10G1076500.v1.1 MD15G1028000.v1.1
prunus_persica	Prupe.1G379700_v2.0.a1 Prupe.1G379700_v2.0.a1 Prupe.1G379700_v2.0.a1 Prupe.1G379700_v2.0.a1 Prupe.8G097300_v2.0.a1 Prupe.8G097300_v2.0.a1 Prupe.8G097300_v2.0.a1 Prupe.8G097300_v2.0.a1
pyrus_communis	pycom08g02530 pycom15g02400
rosa_chinensis	RchiOBHm_Chr6g0264221 RchiOBHm_Chr6g0301001
rosa_laevigata	RLG00000011286 RLG00000014279
rosa_multiflora	Rmu_co8302127.1_g000001 Rmu_sc0003168.1_g000005 Rmu_sc0005114.1_g000014
rosa_roxburghii	Rroxscaffold_176G00431620 Rroxscaffold_7G00167270 Rroxscaffold_7G00203390
rosa_rugosa	Rorug06G0010200 Rorug06G0010300 Rorug06G0010400 Rorug06G0010500.1 Rorug06G0010600 Rorug06G0010600 Rorug06G0010700 Rorug06G0010800 Rorug06G0010900 Rorug06G0011000 Rorug06G0299900
rosa_samantha	Rh6AG130300 Rh6AG413800 Rh6BG127600 Rh6BG420700 Rh6CG126200 Rh6CG428300 Rh6DG112900 Rh6DG413700
rosa_wichuraiana	Rw6G011350 Rw6G011410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	344, 357
AcoI	YGGCCR	1 cut(s)	183
AjnI	CCWGG	2 cut(s)	185, 492
AloI	GAACNNNNNNTCC	1 cut(s)	28
AluBI	AGCT	8 cut(s)	124, 193, 218, 332, 484, 542, 604, 623
AluI	AGCT	8 cut(s)	124, 193, 218, 332, 484, 542, 604, 623
AlwI	GGATC	2 cut(s)	344, 357
AlwNI	CAGNNNCTG	1 cut(s)	296
AoxI	GGCC	1 cut(s)	183
ApeKI	GCWGC	6 cut(s)	167, 190, 329, 539, 560, 620
Asp700I	GAANNNNTTC	1 cut(s)	8
AspLEI	GCGC	1 cut(s)	40
AsuHPI	GGTGA	1 cut(s)	382
BalI	TGGCCA	1 cut(s)	185
BamHI	GGATCC	1 cut(s)	349
BanII	GRGCYC	1 cut(s)	241
BbvI	GCAGC	6 cut(s)	179, 202, 341, 551, 572, 632
BccI	CCATC	1 cut(s)	397
BciT130I	CCWGG	2 cut(s)	187, 494
BfaI	CTAG	4 cut(s)	75, 315, 500, 591
BfmI	CTRYAG	1 cut(s)	435
BfoI	RGCGCY	1 cut(s)	41
BglI	GCCNNNNNGGC	1 cut(s)	35
BisI	GCNGC	6 cut(s)	168, 191, 330, 540, 561, 621
BlsI	GCNGC	6 cut(s)	169, 192, 331, 541, 562, 622
Bme1390I	CCNGG	2 cut(s)	187, 494
BmiI	GGNNCC	1 cut(s)	351
BmrFI	CCNGG	2 cut(s)	187, 494
BmsI	GCATC	1 cut(s)	433
BpmI	CTGGAG	1 cut(s)	626
Bpu10I	CCTNAGC	1 cut(s)	203
BsaAI	YACGTR	1 cut(s)	377
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	186
Bse3DI	GCAATG	3 cut(s)	101, 279, 330
BseBI	CCWGG	2 cut(s)	187, 494
BseMI	GCAATG	3 cut(s)	101, 279, 330
BseMII	CTCAG	3 cut(s)	123, 468, 587
BseNI	ACTGG	1 cut(s)	186
BseRI	GAGGAG	1 cut(s)	494
BseXI	GCAGC	6 cut(s)	179, 202, 341, 551, 572, 632
BsgI	GTGCAG	1 cut(s)	381
BshFI	GGCC	1 cut(s)	185
BsnI	GGCC	1 cut(s)	185
Bsp1286I	GDGCHC	1 cut(s)	241
Bsp143I	GATC	1 cut(s)	349
BspANI	GGCC	1 cut(s)	185
BspCNI	CTCAG	4 cut(s)	124, 469, 586, 639
BspLI	GGNNCC	1 cut(s)	351
BspPI	GGATC	2 cut(s)	344, 357
BsrDI	GCAATG	3 cut(s)	101, 279, 330
BsrI	ACTGG	1 cut(s)	186
BssMI	GATC	1 cut(s)	349
Bst2UI	CCWGG	2 cut(s)	187, 494
Bst4CI	ACNGT	2 cut(s)	285, 531
Bst6I	CTCTTC	1 cut(s)	462
BstBAI	YACGTR	1 cut(s)	377
BstC8I	GCNNGC	2 cut(s)	279, 363
BstDEI	CTNAG	5 cut(s)	132, 203, 477, 573, 626
BstH2I	RGCGCY	1 cut(s)	41
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	1 cut(s)	352
BstMBI	GATC	1 cut(s)	349
BstMWI	GCNNNNNNNGC	7 cut(s)	35, 199, 278, 320, 329, 362, 591
BstNI	CCWGG	2 cut(s)	187, 494
BstSCI	CCNGG	2 cut(s)	185, 492
BstSFI	CTRYAG	1 cut(s)	435
BstV1I	GCAGC	6 cut(s)	179, 202, 341, 551, 572, 632
BstX2I	RGATCY	1 cut(s)	349
BstYI	RGATCY	1 cut(s)	349
BsuRI	GGCC	1 cut(s)	185
BtsIMutI	CAGTG	1 cut(s)	594
Cac8I	GCNNGC	2 cut(s)	279, 363
CaiI	CAGNNNCTG	1 cut(s)	296
CfoI	GCGC	1 cut(s)	40
CsiI	ACCWGGT	1 cut(s)	492
CviAII	CATG	2 cut(s)	304, 636
DdeI	CTNAG	5 cut(s)	132, 203, 477, 573, 626
DpnI	GATC	1 cut(s)	351
DpnII	GATC	1 cut(s)	349
EaeI	YGGCCR	1 cut(s)	183
Eam1104I	CTCTTC	1 cut(s)	462
EarI	CTCTTC	1 cut(s)	462
Eco24I	GRGCYC	1 cut(s)	241
EcoRII	CCWGG	2 cut(s)	185, 492
EcoT38I	GRGCYC	1 cut(s)	241
FaeI	CATG	2 cut(s)	307, 639
FaiI	YATR	7 cut(s)	264, 305, 335, 410, 437, 449, 637
FalI	AAGNNNNNCTT	2 cut(s)	24, 56
FatI	CATG	2 cut(s)	303, 635
Fnu4HI	GCNGC	6 cut(s)	168, 191, 330, 540, 561, 621
FriOI	GRGCYC	1 cut(s)	241
Fsp4HI	GCNGC	6 cut(s)	168, 191, 330, 540, 561, 621
FspBI	CTAG	4 cut(s)	75, 315, 500, 591
GlaI	GCGC	1 cut(s)	39
GluI	GCNGC	6 cut(s)	168, 191, 330, 540, 561, 621
GsuI	CTGGAG	1 cut(s)	626
HaeII	RGCGCY	1 cut(s)	41
HaeIII	GGCC	1 cut(s)	185
HhaI	GCGC	1 cut(s)	40
Hin1II	CATG	2 cut(s)	307, 639
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HphI	GGTGA	1 cut(s)	382
Hpy188I	TCNGA	3 cut(s)	387, 430, 629
Hpy188III	TCNNGA	1 cut(s)	44
HpyAV	CCTTC	1 cut(s)	82
HpyCH4III	ACNGT	2 cut(s)	285, 531
HpyCH4IV	ACGT	1 cut(s)	376
HpyCH4V	TGCA	5 cut(s)	106, 277, 356, 398, 560
HpyF10VI	GCNNNNNNNGC	7 cut(s)	35, 199, 278, 320, 329, 362, 591
HpyF3I	CTNAG	5 cut(s)	132, 203, 477, 573, 626
HpySE526I	ACGT	1 cut(s)	376
Hsp92II	CATG	2 cut(s)	307, 639
HspAI	GCGC	1 cut(s)	38
Kzo9I	GATC	1 cut(s)	349
LmnI	GCTCC	3 cut(s)	98, 481, 547
Lsp1109I	GCAGC	6 cut(s)	179, 202, 341, 551, 572, 632
LweI	GCATC	1 cut(s)	433
MabI	ACCWGGT	1 cut(s)	492
MaeI	CTAG	4 cut(s)	75, 315, 500, 591
MaeII	ACGT	1 cut(s)	376
MaeIII	GTNAC	1 cut(s)	377
MalI	GATC	1 cut(s)	351
MboI	GATC	1 cut(s)	349
MboII	GAAGA	3 cut(s)	125, 479, 564
MflI	RGATCY	1 cut(s)	349
MhlI	GDGCHC	1 cut(s)	241
MlsI	TGGCCA	1 cut(s)	185
MluCI	AATT	4 cut(s)	93, 107, 507, 555
MluNI	TGGCCA	1 cut(s)	185
MnlI	CCTC	8 cut(s)	28, 71, 157, 242, 454, 463, 472, 535
Mox20I	TGGCCA	1 cut(s)	185
MroXI	GAANNNNTTC	1 cut(s)	8
MscI	TGGCCA	1 cut(s)	185
Msp20I	TGGCCA	1 cut(s)	185
MspR9I	CCNGG	2 cut(s)	187, 494
MvaI	CCWGG	2 cut(s)	187, 494
MwoI	GCNNNNNNNGC	7 cut(s)	35, 199, 278, 320, 329, 362, 591
NdeII	GATC	1 cut(s)	349
NlaIII	CATG	2 cut(s)	307, 639
NlaIV	GGNNCC	1 cut(s)	351
NmuCI	GTSAC	1 cut(s)	377
PdmI	GAANNNNTTC	1 cut(s)	8
PkrI	GCNGC	6 cut(s)	169, 192, 331, 541, 562, 622
Ppu21I	YACGTR	1 cut(s)	377
Psp6I	CCWGG	2 cut(s)	185, 492
PspGI	CCWGG	2 cut(s)	185, 492
PspN4I	GGNNCC	1 cut(s)	351
PstNI	CAGNNNCTG	1 cut(s)	296
PsuI	RGATCY	1 cut(s)	349
SatI	GCNGC	6 cut(s)	168, 191, 330, 540, 561, 621
Sau3AI	GATC	1 cut(s)	349
ScrFI	CCNGG	2 cut(s)	187, 494
SduI	GDGCHC	1 cut(s)	241
SexAI	ACCWGGT	1 cut(s)	492
SfaNI	GCATC	1 cut(s)	433
SfcI	CTRYAG	1 cut(s)	435
Sse9I	AATT	4 cut(s)	93, 107, 507, 555
SspMI	CTAG	4 cut(s)	75, 315, 500, 591
StyD4I	CCNGG	2 cut(s)	185, 492
TaaI	ACNGT	2 cut(s)	285, 531
TaiI	ACGT	1 cut(s)	379
TaqI	TCGA	1 cut(s)	516
TasI	AATT	4 cut(s)	93, 107, 507, 555
TscAI	CASTG	1 cut(s)	601
TseFI	GTSAC	1 cut(s)	377
TseI	GCWGC	6 cut(s)	167, 190, 329, 539, 560, 620
Tsp45I	GTSAC	1 cut(s)	377
TspDTI	ATGAA	4 cut(s)	17, 320, 350, 519
TspRI	CASTG	1 cut(s)	601
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	4 cut(s)	75, 315, 500, 591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.