Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0001242

Physical Location & Seq

Genomic Coordinates Forward (+)

2295949 .. 2299888

Gene Structure 3940 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1032000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGATGGTCCAAGGAATGGTGAAGTTGAGAATCATGACCTCCAGATTATCCGGTACTCTCCTTACCAGCCCTGGAGTAATTTGTCTTCATCTTGGTTTGATTTAAGAGTCTTCTATGTGAGGATCAGCAACTTTAAGGTGGATGATTCGACCCCAAAGTTTCTGACTCTCCATCATATTCCTGTAAGCCCGGATACCCTTTTGGAAGTAAATGGTGCGAAAACTAGCATTCACTCTGAAGGTGTTTCTTCACATCTTAGAAGGGATCGGGTAGATAAGAAATCTGAAGAGGCCACATTTGTGAATACAGACAGCATAAGGTTGACGGGGAGTGCAAGATTTGAGGTGTATGACAAAGAAGATCTCATCCTATCTGGGGTGTTAGAGATGTCTAATAGCAACGGTTTCGTTGGGGAATCAAAAAACAATGCCAAGCGATGGAGCATGAATTGTGAATCAGATATCAGTGCTTGTACTGGATTTTTGAAAGGGAAACATCTTGGTGGCGCTGAATTACCTGCACCAACCATTGAAGTCTACATCACAGGGTGCTTCTCCGGCACACCGATCATCTTAACCAAGACCCTGCAGCTTCATTTTAGAAAGAAACACAATAAGAAGAGCATGTTGGATGCTATACCTGAATACGAGACAACTGAATGCCAGAAAGATGTCTTGCCCGGAGTTGATATGGAGGTAGCAGAATACAGAAACTACAAGCCGGAGAACGAGGAAGAGTACAACAATATGTACTGGAGGAGGACGGAATATATGGATGGTGAAGACGGAGAACTCTCATGGTTCAATGCTGGTGTTAGAGTTGGCGTGGGTATCGGACTGGGCGTTTGTCTTGGAGTTGGTATAGGGGTTGGGTTGCTGGTTCGTACTTACCAAACGACCACACGAACTTTCAAGAGGCGCATGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

310

Amino Acids

34.95

Weight (kDa)

5.95

Isoelectric Point (pI)

45.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19400 AT1G19400 AT1G19400 AT1G19400 AT1G75180 AT1G75180 AT1G75180 AT1G75180
fragaria_vesca	FvH4_2g08760 FvH4_2g39840 FvH4_2g39840 FvH4_2g39840
malus_domestica	MD08G1032000.v1.1 MD10G1076500.v1.1 MD15G1028000.v1.1
prunus_persica	Prupe.1G379700_v2.0.a1 Prupe.1G379700_v2.0.a1 Prupe.1G379700_v2.0.a1 Prupe.1G379700_v2.0.a1 Prupe.8G097300_v2.0.a1 Prupe.8G097300_v2.0.a1 Prupe.8G097300_v2.0.a1 Prupe.8G097300_v2.0.a1
pyrus_communis	pycom08g02530 pycom15g02400
rosa_chinensis	RchiOBHm_Chr6g0264221 RchiOBHm_Chr6g0301001
rosa_laevigata	RLG00000011286 RLG00000014279
rosa_multiflora	Rmu_co8302127.1_g000001 Rmu_sc0003168.1_g000005 Rmu_sc0005114.1_g000014
rosa_roxburghii	Rroxscaffold_176G00431620 Rroxscaffold_7G00167270 Rroxscaffold_7G00203390
rosa_rugosa	Rorug06G0010200 Rorug06G0010300 Rorug06G0010400 Rorug06G0010500.1 Rorug06G0010600 Rorug06G0010600 Rorug06G0010700 Rorug06G0010800 Rorug06G0010900 Rorug06G0011000 Rorug06G0299900
rosa_samantha	Rh6AG130300 Rh6AG413800 Rh6BG127600 Rh6BG420700 Rh6CG126200 Rh6CG428300 Rh6DG112900 Rh6DG413700
rosa_wichuraiana	Rw6G011350 Rw6G011410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	526
AccB7I	CCANNNNNTGG	2 cut(s)	17, 438
AccI	GTMKAC	1 cut(s)	537
AclWI	GGATC	2 cut(s)	131, 273
AcuI	CTGAAG	2 cut(s)	258, 306
AdeI	CACNNNGTG	1 cut(s)	549
AfaI	GTAC	5 cut(s)	56, 475, 740, 752, 886
AfiI	CCNNNNNNNGG	3 cut(s)	17, 376, 438
AgsI	TTSAA	4 cut(s)	487, 533, 805, 913
AjnI	CCWGG	1 cut(s)	71
AjuI	GAANNNNNNNTTGG	2 cut(s)	611, 643
AleI	CACNNNNGTG	1 cut(s)	299
AluBI	AGCT	1 cut(s)	592
AluI	AGCT	1 cut(s)	592
Alw26I	GTCTC	1 cut(s)	644
AlwI	GGATC	2 cut(s)	131, 273
AoxI	GGCC	1 cut(s)	291
ApeKI	GCWGC	1 cut(s)	589
ArsI	GACNNNNNNTTYG	2 cut(s)	828, 860
AspLEI	GCGC	2 cut(s)	509, 921
AspS9I	GGNCC	1 cut(s)	8
AsuC2I	CCSGG	2 cut(s)	191, 681
AsuHPI	GGTGA	2 cut(s)	32, 791
AvaII	GGWCC	1 cut(s)	8
BarI	GAAGNNNNNNTAC	2 cut(s)	70, 102
BbsI	GAAGAC	3 cut(s)	78, 103, 789
BbvI	GCAGC	1 cut(s)	601
BccI	CCATC	3 cut(s)	180, 432, 770
BcgI	CGANNNNNNTGC	2 cut(s)	388, 422
BciT130I	CCWGG	1 cut(s)	73
BciVI	GTATCC	1 cut(s)	187
BcnI	CCSGG	2 cut(s)	191, 681
BcoDI	GTCTC	1 cut(s)	644
BfaI	CTAG	1 cut(s)	225
BfmI	CTRYAG	1 cut(s)	587
BfoI	RGCGCY	1 cut(s)	510
BfuAI	ACCTGC	1 cut(s)	526
BfuI	GTATCC	1 cut(s)	187
BglII	AGATCT	1 cut(s)	361
BisI	GCNGC	1 cut(s)	590
BlsI	GCNGC	1 cut(s)	591
Bme1390I	CCNGG	3 cut(s)	73, 191, 681
Bme18I	GGWCC	1 cut(s)	8
BmgT120I	GGNCC	1 cut(s)	8
BmrFI	CCNGG	3 cut(s)	73, 191, 681
BmrI	ACTGGG	1 cut(s)	848
BmsI	GCATC	1 cut(s)	622
BmuI	ACTGGG	1 cut(s)	848
BpiI	GAAGAC	3 cut(s)	78, 103, 789
BpmI	CTGGAG	3 cut(s)	26, 94, 775
BpuMI	CCSGG	2 cut(s)	191, 681
BsaJI	CCNNGG	2 cut(s)	11, 71
BsaWI	WCCGGW	1 cut(s)	51
Bsc4I	CCNNNNNNNGG	3 cut(s)	17, 376, 438
Bse1I	ACTGG	3 cut(s)	481, 758, 843
BseBI	CCWGG	1 cut(s)	73
BseDI	CCNNGG	2 cut(s)	11, 71
BseGI	GGATG	5 cut(s)	10, 148, 366, 637, 781
BseLI	CCNNNNNNNGG	3 cut(s)	17, 376, 438
BseNI	ACTGG	3 cut(s)	481, 758, 843
BseRI	GAGGAG	1 cut(s)	772
BseXI	GCAGC	1 cut(s)	601
BsgI	GTGCAG	1 cut(s)	504
BshFI	GGCC	1 cut(s)	293
BsiSI	CCGG	5 cut(s)	52, 191, 558, 681, 722
BslI	CCNNNNNNNGG	3 cut(s)	17, 376, 438
BsmAI	GTCTC	1 cut(s)	644
BsmI	GAATGC	2 cut(s)	228, 665
BsnI	GGCC	1 cut(s)	293
Bsp143I	GATC	4 cut(s)	123, 265, 361, 567
BspANI	GGCC	1 cut(s)	293
BspHI	TCATGA	1 cut(s)	34
BspMAI	CTGCAG	1 cut(s)	591
BspMI	ACCTGC	1 cut(s)	526
BspPI	GGATC	2 cut(s)	131, 273
BspQI	GCTCTTC	1 cut(s)	614
BsrI	ACTGG	3 cut(s)	481, 758, 843
BssECI	CCNNGG	2 cut(s)	11, 71
BssMI	GATC	4 cut(s)	123, 265, 361, 567
BssT1I	CCWWGG	1 cut(s)	11
Bst2UI	CCWGG	1 cut(s)	73
Bst4CI	ACNGT	1 cut(s)	404
Bst6I	CTCTTC	3 cut(s)	282, 614, 729
BstDEI	CTNAG	1 cut(s)	257
BstF5I	GGATG	5 cut(s)	10, 148, 366, 637, 781
BstH2I	RGCGCY	1 cut(s)	510
BstHHI	GCGC	2 cut(s)	509, 921
BstKTI	GATC	4 cut(s)	126, 268, 364, 570
BstMAI	GTCTC	1 cut(s)	644
BstMBI	GATC	4 cut(s)	123, 265, 361, 567
BstMWI	GCNNNNNNNGC	1 cut(s)	558
BstNI	CCWGG	1 cut(s)	73
BstNSI	RCATGY	2 cut(s)	628, 925
BstSCI	CCNGG	3 cut(s)	71, 189, 679
BstSFI	CTRYAG	1 cut(s)	587
BstV1I	GCAGC	1 cut(s)	601
BstV2I	GAAGAC	3 cut(s)	78, 103, 789
BstX2I	RGATCY	1 cut(s)	361
BstYI	RGATCY	1 cut(s)	361
BsuI	GTATCC	1 cut(s)	187
BsuRI	GGCC	1 cut(s)	293
BtgZI	GCGATG	1 cut(s)	451
BtsCI	GGATG	5 cut(s)	10, 148, 366, 637, 781
BtsIMutI	CAGTG	1 cut(s)	472
BveI	ACCTGC	1 cut(s)	526
CciI	TCATGA	1 cut(s)	34
CfoI	GCGC	2 cut(s)	509, 921
Cfr13I	GGNCC	1 cut(s)	8
Csp6I	GTAC	5 cut(s)	55, 474, 739, 751, 885
CviAII	CATG	5 cut(s)	35, 445, 625, 798, 922
CviJI	RGCY	5 cut(s)	70, 189, 293, 592, 721
CviKI_1	RGCY	5 cut(s)	70, 189, 293, 592, 721
CviQI	GTAC	5 cut(s)	55, 474, 739, 751, 885
DdeI	CTNAG	1 cut(s)	257
DpnI	GATC	4 cut(s)	125, 267, 363, 569
DpnII	GATC	4 cut(s)	123, 265, 361, 567
DraIII	CACNNNGTG	1 cut(s)	549
Eam1104I	CTCTTC	3 cut(s)	282, 614, 729
EarI	CTCTTC	3 cut(s)	282, 614, 729
Eco130I	CCWWGG	1 cut(s)	11
Eco32I	GATATC	1 cut(s)	463
Eco47I	GGWCC	1 cut(s)	8
Eco57I	CTGAAG	2 cut(s)	258, 306
EcoRII	CCWGG	1 cut(s)	71
EcoRV	GATATC	1 cut(s)	463
EcoT14I	CCWWGG	1 cut(s)	11
ErhI	CCWWGG	1 cut(s)	11
FaeI	CATG	5 cut(s)	38, 448, 628, 801, 925
FatI	CATG	5 cut(s)	34, 444, 624, 797, 921
FblI	GTMKAC	1 cut(s)	537
Fnu4HI	GCNGC	1 cut(s)	590
FokI	GGATG	5 cut(s)	17, 155, 353, 644, 788
Fsp4HI	GCNGC	1 cut(s)	590
FspBI	CTAG	1 cut(s)	225
GlaI	GCGC	2 cut(s)	508, 920
GluI	GCNGC	1 cut(s)	590
GsuI	CTGGAG	3 cut(s)	26, 94, 775
HaeII	RGCGCY	1 cut(s)	510
HaeIII	GGCC	1 cut(s)	293
HapII	CCGG	5 cut(s)	52, 191, 558, 681, 722
HhaI	GCGC	2 cut(s)	509, 921
Hin1II	CATG	5 cut(s)	38, 448, 628, 801, 925
Hin6I	GCGC	2 cut(s)	507, 919
HinP1I	GCGC	2 cut(s)	507, 919
HincII	GTYRAC	1 cut(s)	324
HindII	GTYRAC	1 cut(s)	324
HinfI	GANTC	6 cut(s)	31, 108, 146, 166, 416, 455
HpaII	CCGG	5 cut(s)	52, 191, 558, 681, 722
HphI	GGTGA	2 cut(s)	32, 791
Hpy166II	GTNNAC	2 cut(s)	324, 538
Hpy188I	TCNGA	5 cut(s)	165, 238, 286, 460, 836
Hpy188III	TCNNGA	3 cut(s)	35, 43, 913
Hpy8I	GTNNAC	2 cut(s)	324, 538
HpyAV	CCTTC	2 cut(s)	233, 255
HpyCH4III	ACNGT	1 cut(s)	404
HpyCH4V	TGCA	3 cut(s)	335, 521, 589
HpyF10VI	GCNNNNNNNGC	1 cut(s)	558
HpyF3I	CTNAG	1 cut(s)	257
Hsp92II	CATG	5 cut(s)	38, 448, 628, 801, 925
HspAI	GCGC	2 cut(s)	507, 919
Kzo9I	GATC	4 cut(s)	123, 265, 361, 567
LguI	GCTCTTC	1 cut(s)	614
LmnI	GCTCC	1 cut(s)	441
Lsp1109I	GCAGC	1 cut(s)	601
LweI	GCATC	1 cut(s)	622
MaeI	CTAG	1 cut(s)	225
MalI	GATC	4 cut(s)	125, 267, 363, 569
MboI	GATC	4 cut(s)	123, 265, 361, 567
MboII	GAAGA	8 cut(s)	78, 103, 240, 299, 371, 631, 746, 794
MflI	RGATCY	1 cut(s)	361
MluCI	AATT	3 cut(s)	79, 448, 512
MlyI	GAGTC	2 cut(s)	117, 160
MmeI	TCCRAC	1 cut(s)	609
MnlI	CCTC	9 cut(s)	50, 114, 283, 337, 688, 724, 750, 753, 909
MseI	TTAA	3 cut(s)	104, 135, 575
MslI	CAYNNNNRTG	2 cut(s)	299, 501
MspI	CCGG	5 cut(s)	52, 191, 558, 681, 722
MspR9I	CCNGG	3 cut(s)	73, 191, 681
Mva1269I	GAATGC	2 cut(s)	228, 665
MvaI	CCWGG	1 cut(s)	73
MwoI	GCNNNNNNNGC	1 cut(s)	558
NciI	CCSGG	2 cut(s)	191, 681
NdeII	GATC	4 cut(s)	123, 265, 361, 567
NlaIII	CATG	5 cut(s)	38, 448, 628, 801, 925
NspI	RCATGY	2 cut(s)	628, 925
OliI	CACNNNNGTG	1 cut(s)	299
PagI	TCATGA	1 cut(s)	34
PciSI	GCTCTTC	1 cut(s)	614
PcsI	WCGNNNNNNNCGW	1 cut(s)	840
PctI	GAATGC	2 cut(s)	228, 665
PfeI	GAWTC	4 cut(s)	31, 146, 416, 455
PflMI	CCANNNNNTGG	2 cut(s)	17, 438
PkrI	GCNGC	1 cut(s)	591
PleI	GAGTC	2 cut(s)	116, 160
PpsI	GAGTC	2 cut(s)	116, 160
Psp6I	CCWGG	1 cut(s)	71
PspGI	CCWGG	1 cut(s)	71
PspPI	GGNCC	1 cut(s)	8
PstI	CTGCAG	1 cut(s)	591
PsuI	RGATCY	1 cut(s)	361
RsaI	GTAC	5 cut(s)	56, 475, 740, 752, 886
RsaNI	GTAC	5 cut(s)	55, 474, 739, 751, 885
RseI	CAYNNNNRTG	2 cut(s)	299, 501
SapI	GCTCTTC	1 cut(s)	614
SaqAI	TTAA	3 cut(s)	104, 135, 575
SatI	GCNGC	1 cut(s)	590
Sau3AI	GATC	4 cut(s)	123, 265, 361, 567
Sau96I	GGNCC	1 cut(s)	8
SchI	GAGTC	2 cut(s)	117, 160
ScrFI	CCNGG	3 cut(s)	73, 191, 681
SetI	ASST	9 cut(s)	42, 141, 244, 323, 348, 520, 594, 643, 699
SfaNI	GCATC	1 cut(s)	622
SfcI	CTRYAG	1 cut(s)	587
SinI	GGWCC	1 cut(s)	8
SmiMI	CAYNNNNRTG	2 cut(s)	299, 501
Sse9I	AATT	3 cut(s)	79, 448, 512
SspMI	CTAG	1 cut(s)	225
StyD4I	CCNGG	3 cut(s)	71, 189, 679
StyI	CCWWGG	1 cut(s)	11
TaaI	ACNGT	1 cut(s)	404
TaqI	TCGA	1 cut(s)	149
TasI	AATT	3 cut(s)	79, 448, 512
TatI	WGTACW	3 cut(s)	473, 738, 750
TfiI	GAWTC	4 cut(s)	31, 146, 416, 455
Tru1I	TTAA	3 cut(s)	104, 135, 575
Tru9I	TTAA	3 cut(s)	104, 135, 575
TscAI	CASTG	1 cut(s)	472
TseI	GCWGC	1 cut(s)	589
TspDTI	ATGAA	3 cut(s)	78, 461, 584
TspGWI	ACGGA	2 cut(s)	779, 801
TspRI	CASTG	1 cut(s)	472
Van91I	CCANNNNNTGG	2 cut(s)	17, 438
VpaK11BI	GGWCC	1 cut(s)	8
XceI	RCATGY	2 cut(s)	628, 925
XmiI	GTMKAC	1 cut(s)	537
XspI	CTAG	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.