Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001242

Physical Location & Seq

Genomic Coordinates Reverse (-)

7670878 .. 7674482

Gene Structure 3605 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g08760.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGAAAATTCTTATGAGACATCAAATGGCCACACACCTGCTTCAAACGGCTATGCACCTACTTCAAATGGCCATGGACCTACTTCAAATGGTCATAGGGCGACTGGAAATGGCCACATGGTTGGGAGACAATCCACCTACCAACCCAAGGTGTCACTACCTTGGCTTGATGTAAGAGTTTTCTATGTTAGGATTAGCAAATGTGAGATTGAAGATTCGACTCCAGAATTCCTCACGGTAAATCACATTCCATTGGATGCGGATACTTTTCTTGAAGTCAATGGCGTCAGAACTAGCATGTATTCAGATGGGGCAACAACTCTCCTTCGAAGAGATCGGTTAGATAAGAAGTCAGAAGAAGCTACATTTGTCAGCACTGATAGTATAAGGATGACTGGAAGTGTGAAGTTTGAGGTTCTTGACAAGGATGTTATCGTGCTATCTGGGATTTTGGAATTGTGTAATACTAATGGTTCAATTGGGGAAACAGATCACCATGGCCAACAATGGATCATGAATTGTGAAACAAATATAATTGCATGTACTGGCTTTTTCAAAACAAAGCAGTTTACAGGTTCAGAATCTGCAACACCCGCGATTGAAGTATACATCGCAGGGTCCTTCTTGGGAACTCCAATAATTTTAACAAAGACTTTACAGCTTAGTCCTTGGAAGAAGCATATGAGGAAAGGGTTATTGGATTCAATACCAGAGTACGCGGCAACTGAAGAACAGAACAGTAATCCTTCTAGGTTGTCTCTTCAGGAGCCAGAGTACTTGGACCTGAAACCAGAATATGGAGAAAACAACTTGTACTATCCTGGGACATATTTAGAAGGTGAAGATGGAGAGCTTTCATGGTTTAATGCTGGCGTGAGAGTCGGTGTAGGGATTGGCTTGAGCATATGCGTTGGGGTTGGTATCGGAGTAGGTTTGCTTGTTCGAACTTACCAAGGCACCACCCAAAGTTTTAGAAGGCGGCTACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

330

Amino Acids

36.25

Weight (kDa)

5.44

Isoelectric Point (pI)

36.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19400 AT1G19400 AT1G19400 AT1G19400 AT1G75180 AT1G75180 AT1G75180 AT1G75180
fragaria_vesca	FvH4_2g08760 FvH4_2g39840 FvH4_2g39840 FvH4_2g39840
malus_domestica	MD08G1032000.v1.1 MD10G1076500.v1.1 MD15G1028000.v1.1
prunus_persica	Prupe.1G379700_v2.0.a1 Prupe.1G379700_v2.0.a1 Prupe.1G379700_v2.0.a1 Prupe.1G379700_v2.0.a1 Prupe.8G097300_v2.0.a1 Prupe.8G097300_v2.0.a1 Prupe.8G097300_v2.0.a1 Prupe.8G097300_v2.0.a1
pyrus_communis	pycom08g02530 pycom15g02400
rosa_chinensis	RchiOBHm_Chr6g0264221 RchiOBHm_Chr6g0301001
rosa_laevigata	RLG00000011286 RLG00000014279
rosa_multiflora	Rmu_co8302127.1_g000001 Rmu_sc0003168.1_g000005 Rmu_sc0005114.1_g000014
rosa_roxburghii	Rroxscaffold_176G00431620 Rroxscaffold_7G00167270 Rroxscaffold_7G00203390
rosa_rugosa	Rorug06G0010200 Rorug06G0010300 Rorug06G0010400 Rorug06G0010500.1 Rorug06G0010600 Rorug06G0010600 Rorug06G0010700 Rorug06G0010800 Rorug06G0010900 Rorug06G0011000 Rorug06G0299900
rosa_samantha	Rh6AG130300 Rh6AG413800 Rh6BG127600 Rh6BG420700 Rh6CG126200 Rh6CG428300 Rh6DG112900 Rh6DG413700
rosa_wichuraiana	Rw6G011350 Rw6G011410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	46
Acc36I	ACCTGC	1 cut(s)	46
AccB1I	GGYRCC	1 cut(s)	956
AccB7I	CCANNNNNTGG	1 cut(s)	797
AccI	GTMKAC	1 cut(s)	606
AccII	CGCG	2 cut(s)	596, 719
AciI	CCGC	4 cut(s)	260, 594, 719, 979
AclWI	GGATC	1 cut(s)	518
AcoI	YGGCCR	4 cut(s)	28, 70, 112, 499
AcsI	RAATTY	2 cut(s)	7, 227
AcuI	CTGAAG	2 cut(s)	746, 747
AcyI	GRCGYC	1 cut(s)	285
AfaI	GTAC	4 cut(s)	544, 716, 776, 815
AfiI	CCNNNNNNNGG	2 cut(s)	148, 797
AgsI	TTSAA	9 cut(s)	45, 66, 87, 212, 275, 477, 556, 602, 705
AjnI	CCWGG	1 cut(s)	820
AjuI	GAANNNNNNNTTGG	2 cut(s)	680, 712
AluBI	AGCT	3 cut(s)	362, 661, 853
AluI	AGCT	3 cut(s)	362, 661, 853
Alw26I	GTCTC	3 cut(s)	11, 121, 762
AlwI	GGATC	1 cut(s)	518
AlwNI	CAGNNNCTG	1 cut(s)	584
AoxI	GGCC	4 cut(s)	28, 70, 112, 499
ApoI	RAATTY	2 cut(s)	7, 227
AspS9I	GGNCC	3 cut(s)	77, 618, 781
AsuHPI	GGTGA	2 cut(s)	485, 851
AsuII	TTCGAA	2 cut(s)	328, 943
AvaII	GGWCC	3 cut(s)	77, 618, 781
BalI	TGGCCA	4 cut(s)	30, 72, 114, 501
BanI	GGYRCC	1 cut(s)	956
BccI	CCATC	2 cut(s)	302, 839
BceAI	ACGGC	1 cut(s)	64
BciT130I	CCWGG	1 cut(s)	822
BciVI	GTATCC	1 cut(s)	256
BcoDI	GTCTC	3 cut(s)	11, 121, 762
BfaI	CTAG	2 cut(s)	294, 750
BfuAI	ACCTGC	1 cut(s)	46
BfuI	GTATCC	1 cut(s)	256
BisI	GCNGC	2 cut(s)	720, 980
BlsI	GCNGC	2 cut(s)	721, 981
BmcAI	AGTACT	1 cut(s)	776
Bme1390I	CCNGG	1 cut(s)	822
Bme18I	GGWCC	3 cut(s)	77, 618, 781
BmgT120I	GGNCC	3 cut(s)	77, 618, 781
BmiI	GGNNCC	3 cut(s)	619, 768, 958
BmrFI	CCNGG	1 cut(s)	822
BmsI	GCATC	1 cut(s)	247
BpmI	CTGGAG	1 cut(s)	207
Bpu14I	TTCGAA	2 cut(s)	328, 943
BpuEI	CTTGAG	1 cut(s)	919
BsaHI	GRCGYC	1 cut(s)	285
BsaJI	CCNNGG	7 cut(s)	73, 147, 161, 496, 668, 821, 952
BsaXI	ACNNNNNCTCC	2 cut(s)	758, 788
Bsc4I	CCNNNNNNNGG	2 cut(s)	148, 797
Bse1I	ACTGG	3 cut(s)	109, 400, 550
BseBI	CCWGG	1 cut(s)	822
BseDI	CCNNGG	7 cut(s)	73, 147, 161, 496, 668, 821, 952
BseGI	GGATG	3 cut(s)	262, 396, 433
BseLI	CCNNNNNNNGG	2 cut(s)	148, 797
BseNI	ACTGG	3 cut(s)	109, 400, 550
Bsh1236I	CGCG	2 cut(s)	596, 719
BshFI	GGCC	4 cut(s)	30, 72, 114, 501
BshNI	GGYRCC	1 cut(s)	956
BslFI	GGGAC	1 cut(s)	838
BslI	CCNNNNNNNGG	2 cut(s)	148, 797
BsmAI	GTCTC	3 cut(s)	11, 121, 762
BsmFI	GGGAC	1 cut(s)	838
BsnI	GGCC	4 cut(s)	30, 72, 114, 501
Bsp119I	TTCGAA	2 cut(s)	328, 943
Bsp143I	GATC	3 cut(s)	334, 490, 510
Bsp19I	CCATGG	2 cut(s)	73, 496
BspACI	CCGC	4 cut(s)	260, 594, 719, 979
BspANI	GGCC	4 cut(s)	30, 72, 114, 501
BspFNI	CGCG	2 cut(s)	596, 719
BspHI	TCATGA	1 cut(s)	513
BspLI	GGNNCC	3 cut(s)	619, 768, 958
BspMI	ACCTGC	1 cut(s)	46
BspPI	GGATC	1 cut(s)	518
BspT104I	TTCGAA	2 cut(s)	328, 943
BspT107I	GGYRCC	1 cut(s)	956
BsrI	ACTGG	3 cut(s)	109, 400, 550
BssECI	CCNNGG	7 cut(s)	73, 147, 161, 496, 668, 821, 952
BssMI	GATC	3 cut(s)	334, 490, 510
BssNAI	GTATAC	1 cut(s)	607
BssNI	GRCGYC	1 cut(s)	285
BssT1I	CCWWGG	6 cut(s)	73, 147, 161, 496, 668, 952
Bst1107I	GTATAC	1 cut(s)	607
Bst2UI	CCWGG	1 cut(s)	822
Bst4CI	ACNGT	3 cut(s)	238, 740, 987
Bst6I	CTCTTC	2 cut(s)	325, 765
BstACI	GRCGYC	1 cut(s)	285
BstBI	TTCGAA	2 cut(s)	328, 943
BstC8I	GCNNGC	1 cut(s)	871
BstDEI	CTNAG	1 cut(s)	662
BstDSI	CCRYGG	2 cut(s)	73, 496
BstF5I	GGATG	3 cut(s)	262, 396, 433
BstFNI	CGCG	2 cut(s)	596, 719
BstKTI	GATC	3 cut(s)	337, 493, 513
BstMAI	GTCTC	3 cut(s)	11, 121, 762
BstMBI	GATC	3 cut(s)	334, 490, 510
BstMWI	GCNNNNNNNGC	1 cut(s)	593
BstNI	CCWGG	1 cut(s)	822
BstNSI	RCATGY	2 cut(s)	301, 543
BstSCI	CCNGG	1 cut(s)	820
BstUI	CGCG	2 cut(s)	596, 719
BstXI	CCANNNNNNTGG	1 cut(s)	122
BstZ17I	GTATAC	1 cut(s)	607
BsuI	GTATCC	1 cut(s)	256
BsuRI	GGCC	4 cut(s)	30, 72, 114, 501
BtgI	CCRYGG	2 cut(s)	73, 496
BtgZI	GCGATG	1 cut(s)	595
BtsCI	GGATG	3 cut(s)	262, 396, 433
BtsIMutI	CAGTG	1 cut(s)	375
BveI	ACCTGC	1 cut(s)	46
Cac8I	GCNNGC	1 cut(s)	871
CaiI	CAGNNNCTG	1 cut(s)	584
CciI	TCATGA	1 cut(s)	513
Cfr13I	GGNCC	3 cut(s)	77, 618, 781
CseI	GACGC	1 cut(s)	274
Csp6I	GTAC	4 cut(s)	543, 715, 775, 814
CviAII	CATG	7 cut(s)	74, 118, 298, 497, 514, 540, 858
CviQI	GTAC	4 cut(s)	543, 715, 775, 814
DdeI	CTNAG	1 cut(s)	662
DpnI	GATC	3 cut(s)	336, 492, 512
DpnII	GATC	3 cut(s)	334, 490, 510
EaeI	YGGCCR	4 cut(s)	28, 70, 112, 499
Eam1104I	CTCTTC	2 cut(s)	325, 765
EarI	CTCTTC	2 cut(s)	325, 765
Eco130I	CCWWGG	6 cut(s)	73, 147, 161, 496, 668, 952
Eco47I	GGWCC	3 cut(s)	77, 618, 781
Eco57I	CTGAAG	2 cut(s)	746, 747
EcoO109I	RGGNCCY	1 cut(s)	618
EcoRI	GAATTC	1 cut(s)	227
EcoRII	CCWGG	1 cut(s)	820
EcoT14I	CCWWGG	6 cut(s)	73, 147, 161, 496, 668, 952
ErhI	CCWWGG	6 cut(s)	73, 147, 161, 496, 668, 952
FaeI	CATG	7 cut(s)	77, 121, 301, 500, 517, 543, 861
FaqI	GGGAC	1 cut(s)	838
FatI	CATG	7 cut(s)	73, 117, 297, 496, 513, 539, 857
FauI	CCCGC	1 cut(s)	601
FauNDI	CATATG	2 cut(s)	681, 905
FblI	GTMKAC	1 cut(s)	606
Fnu4HI	GCNGC	2 cut(s)	720, 980
FokI	GGATG	3 cut(s)	269, 403, 440
Fsp4HI	GCNGC	2 cut(s)	720, 980
FspBI	CTAG	2 cut(s)	294, 750
GluI	GCNGC	2 cut(s)	720, 980
GsuI	CTGGAG	1 cut(s)	207
HaeIII	GGCC	4 cut(s)	30, 72, 114, 501
HgaI	GACGC	1 cut(s)	274
Hin1I	GRCGYC	1 cut(s)	285
Hin1II	CATG	7 cut(s)	77, 121, 301, 500, 517, 543, 861
HinfI	GANTC	5 cut(s)	215, 220, 581, 701, 879
HphI	GGTGA	2 cut(s)	485, 851
Hpy166II	GTNNAC	2 cut(s)	570, 607
Hpy188I	TCNGA	5 cut(s)	290, 307, 355, 580, 926
Hpy188III	TCNNGA	5 cut(s)	224, 272, 419, 514, 764
Hpy8I	GTNNAC	2 cut(s)	570, 607
HpyAV	CCTTC	5 cut(s)	335, 631, 756, 830, 969
HpyCH4III	ACNGT	3 cut(s)	238, 740, 987
HpyCH4V	TGCA	3 cut(s)	56, 539, 587
HpyF10VI	GCNNNNNNNGC	1 cut(s)	593
HpyF3I	CTNAG	1 cut(s)	662
Hsp92I	GRCGYC	1 cut(s)	285
Hsp92II	CATG	7 cut(s)	77, 121, 301, 500, 517, 543, 861
Kzo9I	GATC	3 cut(s)	334, 490, 510
LmnI	GCTCC	1 cut(s)	766
LweI	GCATC	1 cut(s)	247
MaeI	CTAG	2 cut(s)	294, 750
MaeIII	GTNAC	1 cut(s)	153
MalI	GATC	3 cut(s)	336, 492, 512
MboI	GATC	3 cut(s)	334, 490, 510
MboII	GAAGA	7 cut(s)	224, 342, 368, 685, 740, 752, 854
MfeI	CAATTG	1 cut(s)	477
MlsI	TGGCCA	4 cut(s)	30, 72, 114, 501
MluCI	AATT	7 cut(s)	7, 227, 455, 477, 517, 534, 639
MluNI	TGGCCA	4 cut(s)	30, 72, 114, 501
MlyI	GAGTC	2 cut(s)	214, 888
MnlI	CCTC	3 cut(s)	242, 406, 678
Mox20I	TGGCCA	4 cut(s)	30, 72, 114, 501
MscI	TGGCCA	4 cut(s)	30, 72, 114, 501
MseI	TTAA	2 cut(s)	644, 864
Msp20I	TGGCCA	4 cut(s)	30, 72, 114, 501
MspR9I	CCNGG	1 cut(s)	822
MunI	CAATTG	1 cut(s)	477
MvaI	CCWGG	1 cut(s)	822
MvnI	CGCG	2 cut(s)	596, 719
MwoI	GCNNNNNNNGC	1 cut(s)	593
NcoI	CCATGG	2 cut(s)	73, 496
NdeI	CATATG	2 cut(s)	681, 905
NdeII	GATC	3 cut(s)	334, 490, 510
NlaIII	CATG	7 cut(s)	77, 121, 301, 500, 517, 543, 861
NlaIV	GGNNCC	3 cut(s)	619, 768, 958
NmuCI	GTSAC	1 cut(s)	153
NspI	RCATGY	2 cut(s)	301, 543
NspV	TTCGAA	2 cut(s)	328, 943
PagI	TCATGA	1 cut(s)	513
PaqCI	CACCTGC	1 cut(s)	46
PfeI	GAWTC	3 cut(s)	215, 581, 701
PflMI	CCANNNNNTGG	1 cut(s)	797
PkrI	GCNGC	2 cut(s)	721, 981
PleI	GAGTC	2 cut(s)	214, 887
PpsI	GAGTC	2 cut(s)	214, 887
PpuMI	RGGWCCY	1 cut(s)	618
Psp5II	RGGWCCY	1 cut(s)	618
Psp6I	CCWGG	1 cut(s)	820
PspGI	CCWGG	1 cut(s)	820
PspN4I	GGNNCC	3 cut(s)	619, 768, 958
PspPI	GGNCC	3 cut(s)	77, 618, 781
PspPPI	RGGWCCY	1 cut(s)	618
PstNI	CAGNNNCTG	1 cut(s)	584
RsaI	GTAC	4 cut(s)	544, 716, 776, 815
RsaNI	GTAC	4 cut(s)	543, 715, 775, 814
SaqAI	TTAA	2 cut(s)	644, 864
SatI	GCNGC	2 cut(s)	720, 980
Sau3AI	GATC	3 cut(s)	334, 490, 510
Sau96I	GGNCC	3 cut(s)	77, 618, 781
ScaI	AGTACT	1 cut(s)	776
SchI	GAGTC	2 cut(s)	214, 888
ScrFI	CCNGG	1 cut(s)	822
SfaNI	GCATC	1 cut(s)	247
SfuI	TTCGAA	2 cut(s)	328, 943
SinI	GGWCC	3 cut(s)	77, 618, 781
SmlI	CTYRAG	1 cut(s)	898
SmoI	CTYRAG	1 cut(s)	898
Sse9I	AATT	7 cut(s)	7, 227, 455, 477, 517, 534, 639
SsiI	CCGC	4 cut(s)	260, 594, 719, 979
SspMI	CTAG	2 cut(s)	294, 750
StyD4I	CCNGG	1 cut(s)	820
StyI	CCWWGG	6 cut(s)	73, 147, 161, 496, 668, 952
TaaI	ACNGT	3 cut(s)	238, 740, 987
TaqI	TCGA	3 cut(s)	218, 328, 943
TasI	AATT	7 cut(s)	7, 227, 455, 477, 517, 534, 639
TatI	WGTACW	3 cut(s)	542, 774, 813
TauI	GCSGC	2 cut(s)	722, 982
TfiI	GAWTC	3 cut(s)	215, 581, 701
Tru1I	TTAA	2 cut(s)	644, 864
Tru9I	TTAA	2 cut(s)	644, 864
TscAI	CASTG	1 cut(s)	382
TseFI	GTSAC	1 cut(s)	153
Tsp45I	GTSAC	1 cut(s)	153
TspDTI	ATGAA	2 cut(s)	530, 846
TspRI	CASTG	1 cut(s)	382
Van91I	CCANNNNNTGG	1 cut(s)	797
VpaK11BI	GGWCC	3 cut(s)	77, 618, 781
XapI	RAATTY	2 cut(s)	7, 227
XceI	RCATGY	2 cut(s)	301, 543
XmiI	GTMKAC	1 cut(s)	606
XspI	CTAG	2 cut(s)	294, 750
ZrmI	AGTACT	1 cut(s)	776

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.