Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0001242

Physical Location & Seq

Genomic Coordinates Forward (+)

10885903 .. 10889144

Gene Structure 3242 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1076500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGGAAATTTGTATGAGGCATCAAATGGCCACATGGTTGTGAGACAATCCAAGGTCTCACTGCCCTGGCTTGATGTAAGAGTCTTTTATGTCAGAATTAGCAAATGTGAGATTGATGATTCCGCTCCGGAGTTCCTCACAGTAAATCACATTCCATTGGATCCTGATACCCTTCTTGAAGTCAATGGTGTTAGAACTAGCATCTATTCAGATGGGGCGACAACCCTTCTTAGAAGGGATAGGTTAGATAAGAAGTCCGAAGAAGCCACATTTGTGAGCACTGACAGCATAAGGATGACTGGAAGTGTGAAGTTTGAGGTTTTGGACAAAGACGTTGTGGTCTTATCTGGCGTTCTAGAACTGTGTAATAGTAATGGTTTCGTTGCGGAAACAGATCATCATGGTCAGAGATGGAGCATGAGTTGTGAATCAGATATAGTTGCAAGCACTGGCTTCTTTAAAGGAAGGCAATTTATGGGGCCAGAGTCTGCTTCGCCTTCGATTGAGGTATACATTGCCGGGTCCTTCTCGGGCACTCCAATAATTTTAACGAAGACTTTACAGCTCGGTCTTTGCAAGAGGCATGTGAGGAAAGGGTTGCTGGATTCCATACCGGAGTATGAGGCAACTGAAGACCAGAAAAACAATCCTCATAGGTTCGCTTTTCAGGAGTCGGAGTACTCGGACTACAAACCGGACAACGGAGAAAACCACTTGTACTCCGGGACCTATTTAGAAGGTGAAGACGGTGAGCTTTCATGGTTCAATGCCGGTGTGAGAGTGGGTGTCGGGATCGGCATGAGCATCTGCGTTGGAGTAGGGCTAGGAGTCGGGTTGCTCGTACGAACCTACCAAGGCACCACCCGCAACTTTAGACGCCGGCTACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

297

Amino Acids

32.86

Weight (kDa)

5.45

Isoelectric Point (pI)

35.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19400 AT1G19400 AT1G19400 AT1G19400 AT1G75180 AT1G75180 AT1G75180 AT1G75180
fragaria_vesca	FvH4_2g08760 FvH4_2g39840 FvH4_2g39840 FvH4_2g39840
malus_domestica	MD08G1032000.v1.1 MD10G1076500.v1.1 MD15G1028000.v1.1
prunus_persica	Prupe.1G379700_v2.0.a1 Prupe.1G379700_v2.0.a1 Prupe.1G379700_v2.0.a1 Prupe.1G379700_v2.0.a1 Prupe.8G097300_v2.0.a1 Prupe.8G097300_v2.0.a1 Prupe.8G097300_v2.0.a1 Prupe.8G097300_v2.0.a1
pyrus_communis	pycom08g02530 pycom15g02400
rosa_chinensis	RchiOBHm_Chr6g0264221 RchiOBHm_Chr6g0301001
rosa_laevigata	RLG00000011286 RLG00000014279
rosa_multiflora	Rmu_co8302127.1_g000001 Rmu_sc0003168.1_g000005 Rmu_sc0005114.1_g000014
rosa_roxburghii	Rroxscaffold_176G00431620 Rroxscaffold_7G00167270 Rroxscaffold_7G00203390
rosa_rugosa	Rorug06G0010200 Rorug06G0010300 Rorug06G0010400 Rorug06G0010500.1 Rorug06G0010600 Rorug06G0010600 Rorug06G0010700 Rorug06G0010800 Rorug06G0010900 Rorug06G0011000 Rorug06G0299900
rosa_samantha	Rh6AG130300 Rh6AG413800 Rh6BG127600 Rh6BG420700 Rh6CG126200 Rh6CG428300 Rh6DG112900 Rh6DG413700
rosa_wichuraiana	Rw6G011350 Rw6G011410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	338
AccB1I	GGYRCC	1 cut(s)	857
AccBSI	CCGCTC	1 cut(s)	125
AccI	GTMKAC	1 cut(s)	510
AccIII	TCCGGA	1 cut(s)	127
AciI	CCGC	3 cut(s)	123, 386, 865
AclWI	GGATC	3 cut(s)	155, 168, 800
AcoI	YGGCCR	1 cut(s)	28
AcsI	RAATTY	1 cut(s)	7
AcuI	CTGAAG	1 cut(s)	651
AcyI	GRCGYC	1 cut(s)	877
AfaI	GTAC	3 cut(s)	680, 719, 843
AfiI	CCNNNNNNNGG	1 cut(s)	701
AgsI	TTSAA	2 cut(s)	179, 766
AjnI	CCWGG	1 cut(s)	65
AleI	CACNNNNGTG	1 cut(s)	272
AluBI	AGCT	2 cut(s)	565, 754
AluI	AGCT	2 cut(s)	565, 754
Alw21I	GWGCWC	1 cut(s)	281
Alw26I	GTCTC	2 cut(s)	37, 61
AlwI	GGATC	3 cut(s)	155, 168, 800
AlwNI	CAGNNNCTG	1 cut(s)	488
Ama87I	CYCGRG	1 cut(s)	529
Aor13HI	TCCGGA	1 cut(s)	127
AoxI	GGCC	2 cut(s)	28, 479
ApoI	RAATTY	1 cut(s)	7
AspS9I	GGNCC	3 cut(s)	479, 522, 726
AsuC2I	CCSGG	2 cut(s)	520, 724
AsuHPI	GGTGA	2 cut(s)	752, 761
AvaI	CYCGRG	1 cut(s)	529
AvaII	GGWCC	2 cut(s)	522, 726
BaeGI	GKGCMC	1 cut(s)	536
BalI	TGGCCA	1 cut(s)	30
BamHI	GGATCC	1 cut(s)	160
BanI	GGYRCC	1 cut(s)	857
BbsI	GAAGAC	3 cut(s)	560, 639, 750
Bbv12I	GWGCWC	1 cut(s)	281
BccI	CCATC	2 cut(s)	206, 405
BciT130I	CCWGG	1 cut(s)	67
BcnI	CCSGG	2 cut(s)	520, 724
BcoDI	GTCTC	2 cut(s)	37, 61
BfaI	CTAG	3 cut(s)	198, 356, 824
BmcAI	AGTACT	1 cut(s)	680
Bme1390I	CCNGG	3 cut(s)	67, 520, 724
Bme18I	GGWCC	2 cut(s)	522, 726
BmeT110I	CYCGRG	1 cut(s)	529
BmgT120I	GGNCC	3 cut(s)	479, 522, 726
BmiI	GGNNCC	5 cut(s)	162, 480, 523, 727, 859
BmrFI	CCNGG	3 cut(s)	67, 520, 724
BmsI	GCATC	3 cut(s)	29, 210, 813
BpiI	GAAGAC	3 cut(s)	560, 639, 750
BpuMI	CCSGG	2 cut(s)	520, 724
BsaHI	GRCGYC	1 cut(s)	877
BsaI	GGTCTC	1 cut(s)	61
BsaJI	CCNNGG	3 cut(s)	51, 65, 853
BsaWI	WCCGGW	3 cut(s)	127, 613, 694
BsaXI	ACNNNNNCTCC	6 cut(s)	406, 436, 662, 692, 704, 734
Bsc4I	CCNNNNNNNGG	1 cut(s)	701
Bse118I	RCCGGY	2 cut(s)	770, 879
Bse1I	ACTGG	2 cut(s)	304, 454
Bse3DI	GCAATG	1 cut(s)	513
BseAI	TCCGGA	1 cut(s)	127
BseBI	CCWGG	1 cut(s)	67
BseDI	CCNNGG	3 cut(s)	51, 65, 853
BseGI	GGATG	1 cut(s)	300
BseLI	CCNNNNNNNGG	1 cut(s)	701
BseMI	GCAATG	1 cut(s)	513
BseNI	ACTGG	2 cut(s)	304, 454
BseSI	GKGCMC	1 cut(s)	536
BshFI	GGCC	2 cut(s)	30, 481
BshNI	GGYRCC	1 cut(s)	857
BsiHKAI	GWGCWC	1 cut(s)	281
BsiHKCI	CYCGRG	1 cut(s)	529
BsiSI	CCGG	7 cut(s)	128, 519, 614, 695, 723, 771, 880
BsiWI	CGTACG	1 cut(s)	841
BslFI	GGGAC	1 cut(s)	739
BslI	CCNNNNNNNGG	1 cut(s)	701
BsmAI	GTCTC	2 cut(s)	37, 61
BsmFI	GGGAC	1 cut(s)	739
BsnI	GGCC	2 cut(s)	30, 481
Bso31I	GGTCTC	1 cut(s)	61
BsoBI	CYCGRG	1 cut(s)	529
Bsp1286I	GDGCHC	2 cut(s)	281, 536
Bsp13I	TCCGGA	1 cut(s)	127
Bsp143I	GATC	3 cut(s)	160, 394, 792
BspACI	CCGC	3 cut(s)	123, 386, 865
BspANI	GGCC	2 cut(s)	30, 481
BspEI	TCCGGA	1 cut(s)	127
BspLI	GGNNCC	5 cut(s)	162, 480, 523, 727, 859
BspPI	GGATC	3 cut(s)	155, 168, 800
BspT107I	GGYRCC	1 cut(s)	857
BspTNI	GGTCTC	1 cut(s)	61
BsrBI	CCGCTC	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	513
BsrFI	RCCGGY	2 cut(s)	770, 879
BsrI	ACTGG	2 cut(s)	304, 454
BssAI	RCCGGY	2 cut(s)	770, 879
BssECI	CCNNGG	3 cut(s)	51, 65, 853
BssMI	GATC	3 cut(s)	160, 394, 792
BssNAI	GTATAC	1 cut(s)	511
BssNI	GRCGYC	1 cut(s)	877
BssT1I	CCWWGG	2 cut(s)	51, 853
Bst1107I	GTATAC	1 cut(s)	511
Bst2UI	CCWGG	1 cut(s)	67
Bst4CI	ACNGT	4 cut(s)	142, 363, 749, 888
BstACI	GRCGYC	1 cut(s)	877
BstC8I	GCNNGC	2 cut(s)	445, 881
BstDEI	CTNAG	1 cut(s)	230
BstF5I	GGATG	1 cut(s)	300
BstKTI	GATC	3 cut(s)	163, 397, 795
BstMAI	GTCTC	2 cut(s)	37, 61
BstMBI	GATC	3 cut(s)	160, 394, 792
BstMWI	GCNNNNNNNGC	2 cut(s)	285, 864
BstNI	CCWGG	1 cut(s)	67
BstNSI	RCATGY	1 cut(s)	587
BstSCI	CCNGG	3 cut(s)	65, 518, 722
BstSLI	GKGCMC	1 cut(s)	536
BstV2I	GAAGAC	3 cut(s)	560, 639, 750
BstX2I	RGATCY	1 cut(s)	160
BstYI	RGATCY	1 cut(s)	160
BstZ17I	GTATAC	1 cut(s)	511
BsuRI	GGCC	2 cut(s)	30, 481
BtsCI	GGATG	1 cut(s)	300
BtsI	GCAGTG	1 cut(s)	59
BtsIMutI	CAGTG	3 cut(s)	59, 279, 447
Cac8I	GCNNGC	2 cut(s)	445, 881
CaiI	CAGNNNCTG	1 cut(s)	488
Cfr10I	RCCGGY	2 cut(s)	770, 879
Cfr13I	GGNCC	3 cut(s)	479, 522, 726
CseI	GACGC	1 cut(s)	885
Csp6I	GTAC	3 cut(s)	679, 718, 842
CviAII	CATG	6 cut(s)	34, 401, 418, 584, 759, 799
CviJI	RGCY	9 cut(s)	30, 70, 266, 453, 481, 565, 754, 823, 883
CviKI_1	RGCY	9 cut(s)	30, 70, 266, 453, 481, 565, 754, 823, 883
CviQI	GTAC	3 cut(s)	679, 718, 842
DdeI	CTNAG	1 cut(s)	230
DpnI	GATC	3 cut(s)	162, 396, 794
DpnII	GATC	3 cut(s)	160, 394, 792
DraI	TTTAAA	1 cut(s)	460
DrdI	GACNNNNNNGTC	1 cut(s)	338
DseDI	GACNNNNNNGTC	1 cut(s)	338
EaeI	YGGCCR	1 cut(s)	28
Eco130I	CCWWGG	2 cut(s)	51, 853
Eco31I	GGTCTC	1 cut(s)	61
Eco47I	GGWCC	2 cut(s)	522, 726
Eco57I	CTGAAG	1 cut(s)	651
Eco88I	CYCGRG	1 cut(s)	529
EcoO109I	RGGNCCY	2 cut(s)	522, 726
EcoRII	CCWGG	1 cut(s)	65
EcoT14I	CCWWGG	2 cut(s)	51, 853
ErhI	CCWWGG	2 cut(s)	51, 853
FaeI	CATG	6 cut(s)	37, 404, 421, 587, 762, 802
FaqI	GGGAC	1 cut(s)	739
FatI	CATG	6 cut(s)	33, 400, 417, 583, 758, 798
FauI	CCCGC	1 cut(s)	872
FblI	GTMKAC	1 cut(s)	510
FokI	GGATG	1 cut(s)	307
FspBI	CTAG	3 cut(s)	198, 356, 824
HaeIII	GGCC	2 cut(s)	30, 481
HapII	CCGG	7 cut(s)	128, 519, 614, 695, 723, 771, 880
HgaI	GACGC	1 cut(s)	885
Hin1I	GRCGYC	1 cut(s)	877
Hin1II	CATG	6 cut(s)	37, 404, 421, 587, 762, 802
HinfI	GANTC	7 cut(s)	81, 119, 428, 485, 605, 671, 828
HpaII	CCGG	7 cut(s)	128, 519, 614, 695, 723, 771, 880
HphI	GGTGA	2 cut(s)	752, 761
Hpy166II	GTNNAC	1 cut(s)	511
Hpy188I	TCNGA	7 cut(s)	95, 211, 259, 408, 433, 676, 685
Hpy188III	TCNNGA	6 cut(s)	128, 164, 176, 356, 668, 790
Hpy8I	GTNNAC	1 cut(s)	511
HpyAV	CCTTC	7 cut(s)	182, 228, 236, 459, 507, 535, 731
HpyCH4III	ACNGT	4 cut(s)	142, 363, 749, 888
HpyCH4IV	ACGT	1 cut(s)	333
HpyCH4V	TGCA	2 cut(s)	443, 576
HpyF10VI	GCNNNNNNNGC	2 cut(s)	285, 864
HpyF3I	CTNAG	1 cut(s)	230
HpySE526I	ACGT	1 cut(s)	333
Hsp92I	GRCGYC	1 cut(s)	877
Hsp92II	CATG	6 cut(s)	37, 404, 421, 587, 762, 802
Kpn2I	TCCGGA	1 cut(s)	127
KroI	GCCGGC	1 cut(s)	879
KroNI	GCCGGC	1 cut(s)	881
Kzo9I	GATC	3 cut(s)	160, 394, 792
LmnI	GCTCC	2 cut(s)	130, 414
LweI	GCATC	3 cut(s)	29, 210, 813
MaeI	CTAG	3 cut(s)	198, 356, 824
MaeII	ACGT	1 cut(s)	333
MalI	GATC	3 cut(s)	162, 396, 794
MbiI	CCGCTC	1 cut(s)	125
MboI	GATC	3 cut(s)	160, 394, 792
MboII	GAAGA	4 cut(s)	272, 565, 644, 755
MflI	RGATCY	1 cut(s)	160
MhlI	GDGCHC	2 cut(s)	281, 536
MlsI	TGGCCA	1 cut(s)	30
MluCI	AATT	4 cut(s)	7, 96, 470, 543
MluNI	TGGCCA	1 cut(s)	30
MlyI	GAGTC	4 cut(s)	90, 494, 680, 837
MmeI	TCCRAC	2 cut(s)	654, 793
MnlI	CCTC	8 cut(s)	10, 146, 310, 499, 573, 582, 616, 660
Mox20I	TGGCCA	1 cut(s)	30
MroI	TCCGGA	1 cut(s)	127
MroNI	GCCGGC	1 cut(s)	879
MscI	TGGCCA	1 cut(s)	30
MseI	TTAA	2 cut(s)	459, 548
MslI	CAYNNNNRTG	3 cut(s)	38, 272, 293
Msp20I	TGGCCA	1 cut(s)	30
MspI	CCGG	7 cut(s)	128, 519, 614, 695, 723, 771, 880
MspR9I	CCNGG	3 cut(s)	67, 520, 724
MvaI	CCWGG	1 cut(s)	67
MwoI	GCNNNNNNNGC	2 cut(s)	285, 864
NaeI	GCCGGC	1 cut(s)	881
NciI	CCSGG	2 cut(s)	520, 724
NdeII	GATC	3 cut(s)	160, 394, 792
NgoMIV	GCCGGC	1 cut(s)	879
NlaIII	CATG	6 cut(s)	37, 404, 421, 587, 762, 802
NlaIV	GGNNCC	5 cut(s)	162, 480, 523, 727, 859
NspI	RCATGY	1 cut(s)	587
OliI	CACNNNNGTG	1 cut(s)	272
PcsI	WCGNNNNNNNCGW	1 cut(s)	837
PdiI	GCCGGC	1 cut(s)	881
PfeI	GAWTC	3 cut(s)	119, 428, 605
Pfl23II	CGTACG	1 cut(s)	841
PfoI	TCCNGGA	1 cut(s)	722
PleI	GAGTC	4 cut(s)	89, 493, 679, 836
PpsI	GAGTC	4 cut(s)	89, 493, 679, 836
PpuMI	RGGWCCY	2 cut(s)	522, 726
Psp5II	RGGWCCY	2 cut(s)	522, 726
Psp6I	CCWGG	1 cut(s)	65
PspGI	CCWGG	1 cut(s)	65
PspLI	CGTACG	1 cut(s)	841
PspN4I	GGNNCC	5 cut(s)	162, 480, 523, 727, 859
PspPI	GGNCC	3 cut(s)	479, 522, 726
PspPPI	RGGWCCY	2 cut(s)	522, 726
PstNI	CAGNNNCTG	1 cut(s)	488
PsuI	RGATCY	1 cut(s)	160
RsaI	GTAC	3 cut(s)	680, 719, 843
RsaNI	GTAC	3 cut(s)	679, 718, 842
RseI	CAYNNNNRTG	3 cut(s)	38, 272, 293
SaqAI	TTAA	2 cut(s)	459, 548
Sau3AI	GATC	3 cut(s)	160, 394, 792
Sau96I	GGNCC	3 cut(s)	479, 522, 726
ScaI	AGTACT	1 cut(s)	680
SchI	GAGTC	4 cut(s)	90, 494, 680, 837
ScrFI	CCNGG	3 cut(s)	67, 520, 724
SduI	GDGCHC	2 cut(s)	281, 536
SfaNI	GCATC	3 cut(s)	29, 210, 813
SinI	GGWCC	2 cut(s)	522, 726
SmiMI	CAYNNNNRTG	3 cut(s)	38, 272, 293
Sse9I	AATT	4 cut(s)	7, 96, 470, 543
SsiI	CCGC	3 cut(s)	123, 386, 865
SspMI	CTAG	3 cut(s)	198, 356, 824
StyD4I	CCNGG	3 cut(s)	65, 518, 722
StyI	CCWWGG	2 cut(s)	51, 853
TaaI	ACNGT	4 cut(s)	142, 363, 749, 888
TaiI	ACGT	1 cut(s)	336
TaqI	TCGA	1 cut(s)	500
TaqII	GACCGA	1 cut(s)	557
TasI	AATT	4 cut(s)	7, 96, 470, 543
TatI	WGTACW	2 cut(s)	678, 717
TfiI	GAWTC	3 cut(s)	119, 428, 605
Tru1I	TTAA	2 cut(s)	459, 548
Tru9I	TTAA	2 cut(s)	459, 548
TscAI	CASTG	3 cut(s)	66, 286, 454
TspDTI	ATGAA	1 cut(s)	747
TspGWI	ACGGA	1 cut(s)	717
TspRI	CASTG	3 cut(s)	66, 286, 454
VpaK11BI	GGWCC	2 cut(s)	522, 726
XapI	RAATTY	1 cut(s)	7
XbaI	TCTAGA	1 cut(s)	355
XceI	RCATGY	1 cut(s)	587
XmiI	GTMKAC	1 cut(s)	510
XspI	CTAG	3 cut(s)	198, 356, 824
ZrmI	AGTACT	1 cut(s)	680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.