Prupe.1G379700_v2.0.a1

At1g01500-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0001242
Physical Location & Seq
Forward (+)
34278230 .. 34282123
3894 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G379700.1

Sequence Viewer

Length: 942 bp
ATGGATGATTTGAATGGAAGAGCGAACAATGGGGAAATTGCCAATCCTGACCTCCAGATTATTAGATACTCTCCTTACCAGCCCTGCAGTAAATTAGCTTCATCCTGGTTTGATCTGAGAGTATTCTATGTGAGGGTTAGCAACTTTAAGGTCGATGATTCGACCCCAAAGCATCTTACTCTCAACCACATTCCTCTATTCCCAGATACCCTTTTGGAAATCAATGGTGCTAAAAGTAGCATTTTTTCTGAAGGTGTCTCTTCACATCTTAGAAGGGATCGGGTCGATAAGAAATCTGAAGAAGCCACATTTGTGAATACAGACAGCATAAGGCTGACGGGAAGTGCGAAATTTGAAGTGTTTGACAAAGAAGATCTCATCCTGTCTGGGGTGTTAGATATGTCTAATAGCAATGGTTTCACTGGTGAATCAAAAAGCAATGCCAAGCGATGGAGCATGAATTGTGAATCAGAGATTACCGCTGGCACTGGATTTTTGAAGGGGAAACAACTTGGTGGCGCTGAATTACCTGCACCAACCATTGAGGTTTACATCACAGGCTGCTTCTCTGGGACACCAATCATCTTAACCAAGACCCTGCAGCTTAATTTCCGGAAGAAACATAATAGAATGAGCACGCTGGATGCAATCCCCGAGTACGAGACAACTGAATGCCAGAAAGATGTCTCTCCTGGGCTTGATATGGAGATAGCAGAATACGGAAACTACAAGCCAGAGAATGAGGAAGAGTACAGCAACCTGTACTGGAGGAGGACAGAATATATGGATGGGGAAGATGGCGAGCTCTCATGGTTCAATGCTGGTGTGAGAGTTGGTGTCGGTATCGGACTCGGCGTTTGTCTTGGAATTGGTATCGGGGTCGGTTTGCTGGTCCGTACTTACCAAACGACCACTCGAACTTTCAAGAGGCGACTGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

314

Amino Acids

34.96

Weight (kDa)

5.44

Isoelectric Point (pI)

43.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 538
AccB7I CCANNNNNTGG 1 cut(s) 450
AccIII TCCGGA 1 cut(s) 612
AciI CCGC 1 cut(s) 480
AclWI GGATC 1 cut(s) 285
AcsI RAATTY 1 cut(s) 350
AcuI CTGAAG 2 cut(s) 270, 318
AfaI GTAC 4 cut(s) 659, 752, 764, 898
AfiI CCNNNNNNNGG 2 cut(s) 388, 450
AgsI TTSAA 5 cut(s) 13, 356, 499, 817, 925
AjnI CCWGG 2 cut(s) 104, 691
AleI CACNNNNGTG 1 cut(s) 311
AluBI AGCT 3 cut(s) 98, 604, 805
AluI AGCT 3 cut(s) 98, 604, 805
Alw21I GWGCWC 2 cut(s) 638, 807
Alw26I GTCTC 3 cut(s) 262, 656, 691
AlwI GGATC 1 cut(s) 285
Ama87I CYCGRG 1 cut(s) 653
Aor13HI TCCGGA 1 cut(s) 612
ApeKI GCWGC 2 cut(s) 561, 601
ApoI RAATTY 1 cut(s) 350
ArsI GACNNNNNNTTYG 2 cut(s) 840, 872
AspLEI GCGC 1 cut(s) 521
AspS9I GGNCC 1 cut(s) 892
AsuHPI GGTGA 1 cut(s) 437
AvaI CYCGRG 1 cut(s) 653
AvaII GGWCC 1 cut(s) 892
BanII GRGCYC 1 cut(s) 807
BarI GAAGNNNNNNTAC 2 cut(s) 82, 114
Bbv12I GWGCWC 2 cut(s) 638, 807
BbvI GCAGC 2 cut(s) 548, 613
BccI CCATC 3 cut(s) 444, 782, 791
BciT130I CCWGG 2 cut(s) 106, 693
BcoDI GTCTC 3 cut(s) 262, 656, 691
BfmI CTRYAG 2 cut(s) 85, 599
BfoI RGCGCY 1 cut(s) 522
BfuAI ACCTGC 1 cut(s) 538
BglII AGATCT 1 cut(s) 373
BisI GCNGC 2 cut(s) 562, 602
BlsI GCNGC 2 cut(s) 563, 603
Bme1390I CCNGG 2 cut(s) 106, 693
Bme18I GGWCC 1 cut(s) 892
BmeT110I CYCGRG 1 cut(s) 653
BmgT120I GGNCC 1 cut(s) 892
BmrFI CCNGG 2 cut(s) 106, 693
BmsI GCATC 2 cut(s) 181, 634
BpmI CTGGAG 2 cut(s) 38, 787
BsaJI CCNNGG 1 cut(s) 692
BsaWI WCCGGW 1 cut(s) 612
Bsc4I CCNNNNNNNGG 2 cut(s) 388, 450
Bse1I ACTGG 4 cut(s) 427, 493, 770, 939
Bse3DI GCAATG 2 cut(s) 418, 445
BseAI TCCGGA 1 cut(s) 612
BseBI CCWGG 2 cut(s) 106, 693
BseDI CCNNGG 1 cut(s) 692
BseGI GGATG 5 cut(s) 10, 101, 378, 649, 793
BseLI CCNNNNNNNGG 2 cut(s) 388, 450
BseMI GCAATG 2 cut(s) 418, 445
BseMII CTCAG 1 cut(s) 107
BseNI ACTGG 4 cut(s) 427, 493, 770, 939
BseRI GAGGAG 1 cut(s) 784
BseXI GCAGC 2 cut(s) 548, 613
BsgI GTGCAG 1 cut(s) 516
BsiHKAI GWGCWC 2 cut(s) 638, 807
BsiHKCI CYCGRG 1 cut(s) 653
BsiSI CCGG 1 cut(s) 613
BslFI GGGAC 1 cut(s) 586
BslI CCNNNNNNNGG 2 cut(s) 388, 450
BsmAI GTCTC 3 cut(s) 262, 656, 691
BsmFI GGGAC 1 cut(s) 586
BsmI GAATGC 1 cut(s) 677
BsoBI CYCGRG 1 cut(s) 653
Bsp1286I GDGCHC 2 cut(s) 638, 807
Bsp13I TCCGGA 1 cut(s) 612
Bsp143I GATC 3 cut(s) 112, 277, 373
BspACI CCGC 1 cut(s) 480
BspCNI CTCAG 1 cut(s) 108
BspEI TCCGGA 1 cut(s) 612
BspMAI CTGCAG 2 cut(s) 89, 603
BspMI ACCTGC 1 cut(s) 538
BspPI GGATC 1 cut(s) 285
BspQI GCTCTTC 1 cut(s) 13
BsrDI GCAATG 2 cut(s) 418, 445
BsrI ACTGG 4 cut(s) 427, 493, 770, 939
BssECI CCNNGG 1 cut(s) 692
BssMI GATC 3 cut(s) 112, 277, 373
Bst2UI CCWGG 2 cut(s) 106, 693
Bst6I CTCTTC 3 cut(s) 13, 265, 741
BstC8I GCNNGC 3 cut(s) 484, 638, 803
BstDEI CTNAG 2 cut(s) 116, 269
BstF5I GGATG 5 cut(s) 10, 101, 378, 649, 793
BstH2I RGCGCY 1 cut(s) 522
BstHHI GCGC 1 cut(s) 521
BstKTI GATC 3 cut(s) 115, 280, 376
BstMAI GTCTC 3 cut(s) 262, 656, 691
BstMBI GATC 3 cut(s) 112, 277, 373
BstNI CCWGG 2 cut(s) 106, 693
BstSCI CCNGG 2 cut(s) 104, 691
BstSFI CTRYAG 2 cut(s) 85, 599
BstV1I GCAGC 2 cut(s) 548, 613
BstX2I RGATCY 1 cut(s) 373
BstYI RGATCY 1 cut(s) 373
BtgZI GCGATG 1 cut(s) 463
BtsCI GGATG 5 cut(s) 10, 101, 378, 649, 793
BtsIMutI CAGTG 2 cut(s) 420, 486
BveI ACCTGC 1 cut(s) 538
Cac8I GCNNGC 3 cut(s) 484, 638, 803
CfoI GCGC 1 cut(s) 521
Cfr13I GGNCC 1 cut(s) 892
Csp6I GTAC 4 cut(s) 658, 751, 763, 897
CviAII CATG 2 cut(s) 457, 810
CviJI RGCY 9 cut(s) 82, 98, 305, 334, 561, 604, 697, 733, 805
CviKI_1 RGCY 9 cut(s) 82, 98, 305, 334, 561, 604, 697, 733, 805
CviQI GTAC 4 cut(s) 658, 751, 763, 897
DdeI CTNAG 2 cut(s) 116, 269
DpnI GATC 3 cut(s) 114, 279, 375
DpnII GATC 3 cut(s) 112, 277, 373
Eam1104I CTCTTC 3 cut(s) 13, 265, 741
EarI CTCTTC 3 cut(s) 13, 265, 741
Ecl136II GAGCTC 1 cut(s) 805
Eco24I GRGCYC 1 cut(s) 807
Eco47I GGWCC 1 cut(s) 892
Eco53kI GAGCTC 1 cut(s) 805
Eco57I CTGAAG 2 cut(s) 270, 318
Eco88I CYCGRG 1 cut(s) 653
EcoICRI GAGCTC 1 cut(s) 805
EcoRII CCWGG 2 cut(s) 104, 691
EcoT38I GRGCYC 1 cut(s) 807
FaeI CATG 2 cut(s) 460, 813
FaiI YATR 9 cut(s) 129, 329, 401, 458, 624, 704, 783, 785, 811
FaqI GGGAC 1 cut(s) 586
FatI CATG 2 cut(s) 456, 809
Fnu4HI GCNGC 2 cut(s) 562, 602
FokI GGATG 5 cut(s) 17, 88, 365, 656, 800
FriOI GRGCYC 1 cut(s) 807
Fsp4HI GCNGC 2 cut(s) 562, 602
GlaI GCGC 1 cut(s) 520
GluI GCNGC 2 cut(s) 562, 602
GsuI CTGGAG 2 cut(s) 38, 787
HaeII RGCGCY 1 cut(s) 522
HapII CCGG 1 cut(s) 613
HhaI GCGC 1 cut(s) 521
Hin1II CATG 2 cut(s) 460, 813
Hin6I GCGC 1 cut(s) 519
HinP1I GCGC 1 cut(s) 519
HinfI GANTC 4 cut(s) 158, 428, 467, 849
HpaII CCGG 1 cut(s) 613
HphI GGTGA 1 cut(s) 437
Hpy166II GTNNAC 1 cut(s) 550
Hpy188I TCNGA 5 cut(s) 117, 250, 298, 472, 848
Hpy188III TCNNGA 4 cut(s) 47, 55, 613, 925
Hpy8I GTNNAC 1 cut(s) 550
HpyAV CCTTC 3 cut(s) 245, 267, 493
HpyCH4V TGCA 4 cut(s) 87, 533, 601, 647
HpyF3I CTNAG 2 cut(s) 116, 269
Hsp92II CATG 2 cut(s) 460, 813
HspAI GCGC 1 cut(s) 519
Kpn2I TCCGGA 1 cut(s) 612
Kzo9I GATC 3 cut(s) 112, 277, 373
LguI GCTCTTC 1 cut(s) 13
LmnI GCTCC 1 cut(s) 453
Lsp1109I GCAGC 2 cut(s) 548, 613
LweI GCATC 2 cut(s) 181, 634
MalI GATC 3 cut(s) 114, 279, 375
MboI GATC 3 cut(s) 112, 277, 373
MboII GAAGA 7 cut(s) 30, 252, 311, 383, 628, 758, 806
MflI RGATCY 1 cut(s) 373
MhlI GDGCHC 2 cut(s) 638, 807
MluCI AATT 7 cut(s) 36, 92, 350, 460, 524, 607, 867
MlyI GAGTC 1 cut(s) 843
MnlI CCTC 8 cut(s) 62, 126, 204, 538, 736, 762, 765, 921
MroI TCCGGA 1 cut(s) 612
MseI TTAA 3 cut(s) 147, 587, 606
MslI CAYNNNNRTG 1 cut(s) 311
MspA1I CMGCKG 1 cut(s) 482
MspI CCGG 1 cut(s) 613
MspR9I CCNGG 2 cut(s) 106, 693
Mva1269I GAATGC 1 cut(s) 677
MvaI CCWGG 2 cut(s) 106, 693
NdeII GATC 3 cut(s) 112, 277, 373
NlaIII CATG 2 cut(s) 460, 813
NmeAIII GCCGAG 1 cut(s) 831
OliI CACNNNNGTG 1 cut(s) 311
PciSI GCTCTTC 1 cut(s) 13
PcsI WCGNNNNNNNCGW 2 cut(s) 344, 852
PctI GAATGC 1 cut(s) 677
PfeI GAWTC 3 cut(s) 158, 428, 467
PflMI CCANNNNNTGG 1 cut(s) 450
PkrI GCNGC 2 cut(s) 563, 603
PleI GAGTC 1 cut(s) 843
PpsI GAGTC 1 cut(s) 843
Psp124BI GAGCTC 1 cut(s) 807
Psp6I CCWGG 2 cut(s) 104, 691
PspGI CCWGG 2 cut(s) 104, 691
PspPI GGNCC 1 cut(s) 892
PstI CTGCAG 2 cut(s) 89, 603
PsuI RGATCY 1 cut(s) 373
RsaI GTAC 4 cut(s) 659, 752, 764, 898
RsaNI GTAC 4 cut(s) 658, 751, 763, 897
RseI CAYNNNNRTG 1 cut(s) 311
SacI GAGCTC 1 cut(s) 807
SapI GCTCTTC 1 cut(s) 13
SaqAI TTAA 3 cut(s) 147, 587, 606
SatI GCNGC 2 cut(s) 562, 602
Sau3AI GATC 3 cut(s) 112, 277, 373
Sau96I GGNCC 1 cut(s) 892
SchI GAGTC 1 cut(s) 843
ScrFI CCNGG 2 cut(s) 106, 693
SduI GDGCHC 2 cut(s) 638, 807
SetI ASST 9 cut(s) 54, 100, 153, 256, 532, 549, 606, 762, 807
SfaNI GCATC 2 cut(s) 181, 634
SfcI CTRYAG 2 cut(s) 85, 599
SinI GGWCC 1 cut(s) 892
SmiMI CAYNNNNRTG 1 cut(s) 311
Sse9I AATT 7 cut(s) 36, 92, 350, 460, 524, 607, 867
SsiI CCGC 1 cut(s) 480
SstI GAGCTC 1 cut(s) 807
StyD4I CCNGG 2 cut(s) 104, 691
TaqI TCGA 4 cut(s) 153, 161, 285, 916
TasI AATT 7 cut(s) 36, 92, 350, 460, 524, 607, 867
TatI WGTACW 2 cut(s) 750, 762
TfiI GAWTC 3 cut(s) 158, 428, 467
Tru1I TTAA 3 cut(s) 147, 587, 606
Tru9I TTAA 3 cut(s) 147, 587, 606
TscAI CASTG 2 cut(s) 427, 493
TseI GCWGC 2 cut(s) 561, 601
TspDTI ATGAA 2 cut(s) 90, 473
TspGWI ACGGA 2 cut(s) 735, 884
TspRI CASTG 2 cut(s) 427, 493
Van91I CCANNNNNTGG 1 cut(s) 450
VpaK11BI GGWCC 1 cut(s) 892
XapI RAATTY 1 cut(s) 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.