Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005114.1

Orthogroup ID

OG0001242

Physical Location & Seq

Genomic Coordinates Reverse (-)

30140 .. 33018

Gene Structure 2879 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005114.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

atggaaaattcttatgagacatcaaacagccacacacctattttcaatggttatgcacctacttcaaatggccatggacctatttcaaatggtcgtgggtcaactggtggtggccacatgattgggagacaatccacctaccaacccaaggtgtcactactaccttggcttgatgtaagagttttctatgttaggattagcaaatgtgagattgatgattcggctccagaattcctcacggtaaatcacattccattggatgctgatacccttcttgaagtcaatggtgttagaactagcatgtattcagatggggaaacaactcttcttcgaagagaccggttagataagaagtcagaagaagctacgtttgtcagcactgatagtataaggatgactggaagtgtgaagtttgaggtttttgacaaggatgttattgtgctatctggggttttagagttgtgtaataatattggtttcattgcggaaacagatcatcatggtccgagatggagcatgaattgtgaaacaaatataattgcaagcactggcttctttaaaccaaagcagtttacgggttcagagtctgcaacaccttcaattgaagtatacattgcagggtccttcttgggaactccaataattctaacaaagactttacagctgagtccttggaagaagcatacgaggaaggggttattggattcaataccagagtatgatgcaactgaagacgagaacaataatccttctatgttcatgtttcagaggaaacaagcaagaaacttgatcattcaggtgggaaatgcatctatgtgcactacagcactcaaactaaaggctgagcactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

283

Amino Acids

31.4

Weight (kDa)

5.92

Isoelectric Point (pI)

34.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19400 AT1G19400 AT1G19400 AT1G19400 AT1G75180 AT1G75180 AT1G75180 AT1G75180
fragaria_vesca	FvH4_2g08760 FvH4_2g39840 FvH4_2g39840 FvH4_2g39840
malus_domestica	MD08G1032000.v1.1 MD10G1076500.v1.1 MD15G1028000.v1.1
prunus_persica	Prupe.1G379700_v2.0.a1 Prupe.1G379700_v2.0.a1 Prupe.1G379700_v2.0.a1 Prupe.1G379700_v2.0.a1 Prupe.8G097300_v2.0.a1 Prupe.8G097300_v2.0.a1 Prupe.8G097300_v2.0.a1 Prupe.8G097300_v2.0.a1
pyrus_communis	pycom08g02530 pycom15g02400
rosa_chinensis	RchiOBHm_Chr6g0264221 RchiOBHm_Chr6g0301001
rosa_laevigata	RLG00000011286 RLG00000014279
rosa_multiflora	Rmu_co8302127.1_g000001 Rmu_sc0003168.1_g000005 Rmu_sc0005114.1_g000014
rosa_roxburghii	Rroxscaffold_176G00431620 Rroxscaffold_7G00167270 Rroxscaffold_7G00203390
rosa_rugosa	Rorug06G0010200 Rorug06G0010300 Rorug06G0010400 Rorug06G0010500.1 Rorug06G0010600 Rorug06G0010600 Rorug06G0010700 Rorug06G0010800 Rorug06G0010900 Rorug06G0011000 Rorug06G0299900
rosa_samantha	Rh6AG130300 Rh6AG413800 Rh6BG127600 Rh6BG420700 Rh6CG126200 Rh6CG428300 Rh6DG112900 Rh6DG413700
rosa_wichuraiana	Rw6G011350 Rw6G011410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	609
AciI	CCGC	1 cut(s)	485
AcoI	YGGCCR	2 cut(s)	70, 112
AcsI	RAATTY	2 cut(s)	7, 230
AcuI	CTGAAG	1 cut(s)	750
AfiI	CCNNNNNNNGG	1 cut(s)	148
AgeI	ACCGGT	1 cut(s)	339
AgsI	TTSAA	7 cut(s)	46, 66, 87, 278, 600, 605, 708
AjuI	GAANNNNNNNTTGG	2 cut(s)	683, 715
AluBI	AGCT	2 cut(s)	365, 664
AluI	AGCT	2 cut(s)	365, 664
Alw21I	GWGCWC	2 cut(s)	821, 849
Alw26I	GTCTC	3 cut(s)	11, 121, 330
Alw44I	GTGCAC	1 cut(s)	817
AlwNI	CAGNNNCTG	1 cut(s)	587
AoxI	GGCC	2 cut(s)	70, 112
ApaLI	GTGCAC	1 cut(s)	817
ApoI	RAATTY	2 cut(s)	7, 230
AsiGI	ACCGGT	1 cut(s)	339
AspS9I	GGNCC	3 cut(s)	77, 503, 621
AsuII	TTCGAA	1 cut(s)	331
AvaII	GGWCC	3 cut(s)	77, 503, 621
BaeGI	GKGCMC	1 cut(s)	821
BalI	TGGCCA	2 cut(s)	72, 114
BbsI	GAAGAC	1 cut(s)	738
Bbv12I	GWGCWC	2 cut(s)	821, 849
BccI	CCATC	2 cut(s)	305, 504
BclI	TGATCA	1 cut(s)	789
BcoDI	GTCTC	3 cut(s)	11, 121, 330
BfaI	CTAG	2 cut(s)	297, 850
BfmI	CTRYAG	1 cut(s)	822
BlpI	GCTNAGC	1 cut(s)	843
Bme18I	GGWCC	3 cut(s)	77, 503, 621
BmgT120I	GGNCC	3 cut(s)	77, 503, 621
BmiI	GGNNCC	2 cut(s)	225, 622
BmsI	GCATC	3 cut(s)	250, 712, 818
BpiI	GAAGAC	1 cut(s)	738
BpmI	CTGGAG	1 cut(s)	210
Bpu1102I	GCTNAGC	1 cut(s)	843
Bpu14I	TTCGAA	1 cut(s)	331
BsaI	GGTCTC	1 cut(s)	330
BsaJI	CCNNGG	4 cut(s)	73, 147, 164, 671
BsaWI	WCCGGW	1 cut(s)	339
Bsc4I	CCNNNNNNNGG	1 cut(s)	148
Bse118I	RCCGGY	1 cut(s)	339
Bse1I	ACTGG	3 cut(s)	109, 403, 553
Bse3DI	GCAATG	2 cut(s)	480, 612
BseDI	CCNNGG	4 cut(s)	73, 147, 164, 671
BseGI	GGATG	3 cut(s)	265, 399, 436
BseLI	CCNNNNNNNGG	1 cut(s)	148
BseMI	GCAATG	2 cut(s)	480, 612
BseMII	CTCAG	2 cut(s)	656, 834
BseNI	ACTGG	3 cut(s)	109, 403, 553
BseSI	GKGCMC	1 cut(s)	821
BshFI	GGCC	2 cut(s)	72, 114
BshTI	ACCGGT	1 cut(s)	339
BsiHKAI	GWGCWC	2 cut(s)	821, 849
BsiSI	CCGG	1 cut(s)	340
BslI	CCNNNNNNNGG	1 cut(s)	148
BsmAI	GTCTC	3 cut(s)	11, 121, 330
BsnI	GGCC	2 cut(s)	72, 114
Bso31I	GGTCTC	1 cut(s)	330
Bsp119I	TTCGAA	1 cut(s)	331
Bsp1286I	GDGCHC	2 cut(s)	821, 849
Bsp143I	GATC	2 cut(s)	493, 789
Bsp1720I	GCTNAGC	1 cut(s)	843
Bsp19I	CCATGG	1 cut(s)	73
BspACI	CCGC	1 cut(s)	485
BspANI	GGCC	2 cut(s)	72, 114
BspCNI	CTCAG	2 cut(s)	657, 835
BspLI	GGNNCC	2 cut(s)	225, 622
BspT104I	TTCGAA	1 cut(s)	331
BspTNI	GGTCTC	1 cut(s)	330
BsrDI	GCAATG	2 cut(s)	480, 612
BsrFI	RCCGGY	1 cut(s)	339
BsrI	ACTGG	3 cut(s)	109, 403, 553
BssAI	RCCGGY	1 cut(s)	339
BssECI	CCNNGG	4 cut(s)	73, 147, 164, 671
BssMI	GATC	2 cut(s)	493, 789
BssNAI	GTATAC	1 cut(s)	610
BssT1I	CCWWGG	4 cut(s)	73, 147, 164, 671
Bst1107I	GTATAC	1 cut(s)	610
Bst4CI	ACNGT	1 cut(s)	241
Bst6I	CTCTTC	2 cut(s)	328, 330
BstBI	TTCGAA	1 cut(s)	331
BstC8I	GCNNGC	1 cut(s)	544
BstDEI	CTNAG	2 cut(s)	665, 843
BstDSI	CCRYGG	1 cut(s)	73
BstF5I	GGATG	3 cut(s)	265, 399, 436
BstKTI	GATC	2 cut(s)	496, 792
BstMAI	GTCTC	3 cut(s)	11, 121, 330
BstMBI	GATC	2 cut(s)	493, 789
BstNSI	RCATGY	1 cut(s)	304
BstSFI	CTRYAG	1 cut(s)	822
BstSLI	GKGCMC	1 cut(s)	821
BstV2I	GAAGAC	1 cut(s)	738
BstXI	CCANNNNNNTGG	1 cut(s)	122
BstZ17I	GTATAC	1 cut(s)	610
BsuRI	GGCC	2 cut(s)	72, 114
BtgI	CCRYGG	1 cut(s)	73
BtsCI	GGATG	3 cut(s)	265, 399, 436
BtsIMutI	CAGTG	2 cut(s)	378, 546
Cac8I	GCNNGC	1 cut(s)	544
CaiI	CAGNNNCTG	1 cut(s)	587
Cfr10I	RCCGGY	1 cut(s)	339
Cfr13I	GGNCC	3 cut(s)	77, 503, 621
CspAI	ACCGGT	1 cut(s)	339
CviAII	CATG	6 cut(s)	74, 118, 301, 500, 517, 760
CviJI	RGCY	9 cut(s)	30, 72, 114, 169, 224, 365, 552, 664, 842
CviKI_1	RGCY	9 cut(s)	30, 72, 114, 169, 224, 365, 552, 664, 842
DdeI	CTNAG	2 cut(s)	665, 843
DpnI	GATC	2 cut(s)	495, 791
DpnII	GATC	2 cut(s)	493, 789
DraI	TTTAAA	1 cut(s)	559
EaeI	YGGCCR	2 cut(s)	70, 112
Eam1104I	CTCTTC	2 cut(s)	328, 330
EarI	CTCTTC	2 cut(s)	328, 330
Eco130I	CCWWGG	4 cut(s)	73, 147, 164, 671
Eco31I	GGTCTC	1 cut(s)	330
Eco47I	GGWCC	3 cut(s)	77, 503, 621
Eco57I	CTGAAG	1 cut(s)	750
EcoO109I	RGGNCCY	1 cut(s)	621
EcoRI	GAATTC	1 cut(s)	230
EcoT14I	CCWWGG	4 cut(s)	73, 147, 164, 671
EcoT22I	ATGCAT	1 cut(s)	811
ErhI	CCWWGG	4 cut(s)	73, 147, 164, 671
FaeI	CATG	6 cut(s)	77, 121, 304, 503, 520, 763
FatI	CATG	6 cut(s)	73, 117, 300, 499, 516, 759
FbaI	TGATCA	1 cut(s)	789
FblI	GTMKAC	1 cut(s)	609
FokI	GGATG	3 cut(s)	272, 406, 443
FspBI	CTAG	2 cut(s)	297, 850
GsuI	CTGGAG	1 cut(s)	210
HaeIII	GGCC	2 cut(s)	72, 114
HapII	CCGG	1 cut(s)	340
Hin1II	CATG	6 cut(s)	77, 121, 304, 503, 520, 763
HincII	GTYRAC	1 cut(s)	102
HindII	GTYRAC	1 cut(s)	102
HinfI	GANTC	4 cut(s)	218, 584, 667, 704
HpaII	CCGG	1 cut(s)	340
Hpy166II	GTNNAC	4 cut(s)	102, 573, 610, 819
Hpy188I	TCNGA	5 cut(s)	310, 358, 507, 583, 768
Hpy188III	TCNNGA	2 cut(s)	227, 275
Hpy8I	GTNNAC	4 cut(s)	102, 573, 610, 819
HpyAV	CCTTC	5 cut(s)	281, 606, 634, 685, 759
HpyCH4III	ACNGT	1 cut(s)	241
HpyCH4IV	ACGT	1 cut(s)	368
HpyCH4V	TGCA	7 cut(s)	56, 542, 590, 617, 725, 809, 819
HpyF3I	CTNAG	2 cut(s)	665, 843
HpySE526I	ACGT	1 cut(s)	368
Hsp92II	CATG	6 cut(s)	77, 121, 304, 503, 520, 763
Ksp22I	TGATCA	1 cut(s)	789
Kzo9I	GATC	2 cut(s)	493, 789
LmnI	GCTCC	2 cut(s)	229, 513
LpnPI	CCDG	9 cut(s)	90, 240, 353, 384, 432, 534, 603, 726, 782
LweI	GCATC	3 cut(s)	250, 712, 818
MaeI	CTAG	2 cut(s)	297, 850
MaeII	ACGT	1 cut(s)	368
MaeIII	GTNAC	1 cut(s)	153
MalI	GATC	2 cut(s)	495, 791
MboI	GATC	2 cut(s)	493, 789
MboII	GAAGA	6 cut(s)	317, 320, 345, 371, 688, 743
MfeI	CAATTG	1 cut(s)	600
MhlI	GDGCHC	2 cut(s)	821, 849
MlsI	TGGCCA	2 cut(s)	72, 114
MluCI	AATT	6 cut(s)	7, 230, 520, 537, 600, 642
MluNI	TGGCCA	2 cut(s)	72, 114
MlyI	GAGTC	2 cut(s)	593, 676
MnlI	CCTC	4 cut(s)	245, 409, 681, 762
Mox20I	TGGCCA	2 cut(s)	72, 114
Mph1103I	ATGCAT	1 cut(s)	811
MscI	TGGCCA	2 cut(s)	72, 114
MseI	TTAA	1 cut(s)	558
MslI	CAYNNNNRTG	2 cut(s)	797, 814
Msp20I	TGGCCA	2 cut(s)	72, 114
MspA1I	CMGCKG	1 cut(s)	664
MspI	CCGG	1 cut(s)	340
MunI	CAATTG	1 cut(s)	600
NcoI	CCATGG	1 cut(s)	73
NdeII	GATC	2 cut(s)	493, 789
NlaIII	CATG	6 cut(s)	77, 121, 304, 503, 520, 763
NlaIV	GGNNCC	2 cut(s)	225, 622
NmuCI	GTSAC	1 cut(s)	153
NsiI	ATGCAT	1 cut(s)	811
NspI	RCATGY	1 cut(s)	304
NspV	TTCGAA	1 cut(s)	331
PfeI	GAWTC	2 cut(s)	218, 704
PinAI	ACCGGT	1 cut(s)	339
PleI	GAGTC	2 cut(s)	592, 675
PpsI	GAGTC	2 cut(s)	592, 675
PpuMI	RGGWCCY	1 cut(s)	621
Psp5II	RGGWCCY	1 cut(s)	621
PspN4I	GGNNCC	2 cut(s)	225, 622
PspPI	GGNCC	3 cut(s)	77, 503, 621
PspPPI	RGGWCCY	1 cut(s)	621
PstNI	CAGNNNCTG	1 cut(s)	587
PvuII	CAGCTG	1 cut(s)	664
RseI	CAYNNNNRTG	2 cut(s)	797, 814
SaqAI	TTAA	1 cut(s)	558
Sau3AI	GATC	2 cut(s)	493, 789
Sau96I	GGNCC	3 cut(s)	77, 503, 621
SchI	GAGTC	2 cut(s)	593, 676
SduI	GDGCHC	2 cut(s)	821, 849
SfaNI	GCATC	3 cut(s)	250, 712, 818
SfcI	CTRYAG	1 cut(s)	822
SfuI	TTCGAA	1 cut(s)	331
SinI	GGWCC	3 cut(s)	77, 503, 621
SmiMI	CAYNNNNRTG	2 cut(s)	797, 814
Sse9I	AATT	6 cut(s)	7, 230, 520, 537, 600, 642
SsiI	CCGC	1 cut(s)	485
SspI	AATATT	1 cut(s)	472
SspMI	CTAG	2 cut(s)	297, 850
StyI	CCWWGG	4 cut(s)	73, 147, 164, 671
TaaI	ACNGT	1 cut(s)	241
TaiI	ACGT	1 cut(s)	371
TaqI	TCGA	1 cut(s)	331
TasI	AATT	6 cut(s)	7, 230, 520, 537, 600, 642
TfiI	GAWTC	2 cut(s)	218, 704
Tru1I	TTAA	1 cut(s)	558
Tru9I	TTAA	1 cut(s)	558
TscAI	CASTG	2 cut(s)	385, 553
TseFI	GTSAC	1 cut(s)	153
Tsp45I	GTSAC	1 cut(s)	153
TspDTI	ATGAA	3 cut(s)	469, 533, 748
TspRI	CASTG	2 cut(s)	385, 553
VneI	GTGCAC	1 cut(s)	817
VpaK11BI	GGWCC	3 cut(s)	77, 503, 621
XapI	RAATTY	2 cut(s)	7, 230
XceI	RCATGY	1 cut(s)	304
XmiI	GTMKAC	1 cut(s)	609
XspI	CTAG	2 cut(s)	297, 850
Zsp2I	ATGCAT	1 cut(s)	811

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.