Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001242

Physical Location & Seq

Genomic Coordinates Forward (+)

28498694 .. 28502183

Gene Structure 3490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g39840.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGATGTTCCATATGACACAACACCAAGCAATGGTGAAGTAGCCAATAACGGCCTTCAGATAATTAGATACTCTCCTTATCAGTACTACCAGCACAATAGTAAATTATCATCATCCTGGTTTGATCTGAGAGTCTTCTATGTAAGGATCAGCAACTTTAAGGTGGATGAATCTACCCCCAAGTTTCTGACCCTCAACCATATTCCTCTATGCCCGGATACCCTTTTGGAAGTAAATGGTGCGAGAACTAGCATGTACTCTGATGGTGTATCTTCACATCTTAGAAGAGATCGGGTGGACAAGAAATCCGAAGAAGTCACATTTGTGAATACAGACAGCATAAGGTTCACAGGGAGTGTGAAATTTGAGGTGTTTGATAAAGATGATCTCATTCTCTCCGGGGTGTTAGATATGTCTAATAGCAATGGTTATGTTGGGGAATCAAAGAACAATGCCAAGCGATGGAGCATGAATTGTGAATCAGAGATCACTTCTGGCACTGGATTCTTCAAAGGAAAACAACTTAATGGCACTGAACCTGCACCGAGCATTGAGGTTTACGTTGCTGGCTCCTTCTCTGGAACACCAATCATCTTAACCAAGACCCTGCAGATTGCTTTCCGAAAGAAGCACAATAGGAAGAGCACTTTGGATGCAATTCCGGAGTATGAAACAACTGAAATGCCAAAAGATGAGTCCGCTGAACTTGATATGGAGGTGGCAGAATATAGAAATTACAAACCAGAAAATGAGGAAGAGTATGGCATGTACTGGAGGAGGACAGAATACGATGGCGAAGATGGTGAACTCTCATGGTTCAATGCTGGTGTGAGAGTTGGCGTTGGAATTGGACTTGGCATTTGTCTTGGAGTTGGTATAGGGGTCGGTTTGCTGGTTCGTACATATCAAACAACCACTCGGACTTTCAAGAGGCGGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

314

Amino Acids

35.41

Weight (kDa)

5.45

Isoelectric Point (pI)

41.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19400 AT1G19400 AT1G19400 AT1G19400 AT1G75180 AT1G75180 AT1G75180 AT1G75180
fragaria_vesca	FvH4_2g08760 FvH4_2g39840 FvH4_2g39840 FvH4_2g39840
malus_domestica	MD08G1032000.v1.1 MD10G1076500.v1.1 MD15G1028000.v1.1
prunus_persica	Prupe.1G379700_v2.0.a1 Prupe.1G379700_v2.0.a1 Prupe.1G379700_v2.0.a1 Prupe.1G379700_v2.0.a1 Prupe.8G097300_v2.0.a1 Prupe.8G097300_v2.0.a1 Prupe.8G097300_v2.0.a1 Prupe.8G097300_v2.0.a1
pyrus_communis	pycom08g02530 pycom15g02400
rosa_chinensis	RchiOBHm_Chr6g0264221 RchiOBHm_Chr6g0301001
rosa_laevigata	RLG00000011286 RLG00000014279
rosa_multiflora	Rmu_co8302127.1_g000001 Rmu_sc0003168.1_g000005 Rmu_sc0005114.1_g000014
rosa_roxburghii	Rroxscaffold_176G00431620 Rroxscaffold_7G00167270 Rroxscaffold_7G00203390
rosa_rugosa	Rorug06G0010200 Rorug06G0010300 Rorug06G0010400 Rorug06G0010500.1 Rorug06G0010600 Rorug06G0010600 Rorug06G0010700 Rorug06G0010800 Rorug06G0010900 Rorug06G0011000 Rorug06G0299900
rosa_samantha	Rh6AG130300 Rh6AG413800 Rh6BG127600 Rh6BG420700 Rh6CG126200 Rh6CG428300 Rh6DG112900 Rh6DG413700
rosa_wichuraiana	Rw6G011350 Rw6G011410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	547
AccB7I	CCANNNNNTGG	2 cut(s)	32, 462
AccIII	TCCGGA	1 cut(s)	661
AciI	CCGC	2 cut(s)	699, 934
AclWI	GGATC	1 cut(s)	155
AcsI	RAATTY	1 cut(s)	362
AcuI	CTGAAG	1 cut(s)	41
AfaI	GTAC	4 cut(s)	86, 257, 770, 901
AfiI	CCNNNNNNNGG	2 cut(s)	32, 462
AgsI	TTSAA	3 cut(s)	511, 820, 928
AjnI	CCWGG	1 cut(s)	116
AjuI	GAANNNNNNNTTGG	2 cut(s)	632, 664
AleI	CACNNNNGTG	1 cut(s)	323
Alw21I	GWGCWC	1 cut(s)	647
AlwI	GGATC	1 cut(s)	155
Aor13HI	TCCGGA	1 cut(s)	661
AoxI	GGCC	1 cut(s)	52
ApoI	RAATTY	1 cut(s)	362
ArsI	GACNNNNNNTTYG	4 cut(s)	680, 712, 843, 875
AsuC2I	CCSGG	2 cut(s)	215, 400
AsuHPI	GGTGA	2 cut(s)	47, 815
BbsI	GAAGAC	1 cut(s)	127
Bbv12I	GWGCWC	1 cut(s)	647
BccI	CCATC	4 cut(s)	257, 456, 785, 794
BceAI	ACGGC	1 cut(s)	67
BciT130I	CCWGG	1 cut(s)	118
BciVI	GTATCC	1 cut(s)	211
BcnI	CCSGG	2 cut(s)	215, 400
BfaI	CTAG	1 cut(s)	249
BfmI	CTRYAG	1 cut(s)	608
BfuAI	ACCTGC	1 cut(s)	547
BfuI	GTATCC	1 cut(s)	211
BisI	GCNGC	1 cut(s)	935
BlsI	GCNGC	1 cut(s)	936
BmcAI	AGTACT	1 cut(s)	86
Bme1390I	CCNGG	3 cut(s)	118, 215, 400
BmiI	GGNNCC	1 cut(s)	571
BmrFI	CCNGG	3 cut(s)	118, 215, 400
BmsI	GCATC	1 cut(s)	643
BpiI	GAAGAC	1 cut(s)	127
BpmI	CTGGAG	1 cut(s)	793
BpuMI	CCSGG	2 cut(s)	215, 400
BsaJI	CCNNGG	1 cut(s)	399
BsaWI	WCCGGW	1 cut(s)	661
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 462
Bse1I	ACTGG	2 cut(s)	505, 776
Bse3DI	GCAATG	2 cut(s)	37, 430
BseAI	TCCGGA	1 cut(s)	661
BseBI	CCWGG	1 cut(s)	118
BseDI	CCNNGG	1 cut(s)	399
BseGI	GGATG	4 cut(s)	10, 113, 172, 658
BseLI	CCNNNNNNNGG	2 cut(s)	32, 462
BseMI	GCAATG	2 cut(s)	37, 430
BseMII	CTCAG	1 cut(s)	119
BseNI	ACTGG	2 cut(s)	505, 776
BseRI	GAGGAG	1 cut(s)	790
BsgI	GTGCAG	1 cut(s)	525
BshFI	GGCC	1 cut(s)	54
BsiHKAI	GWGCWC	1 cut(s)	647
BsiSI	CCGG	3 cut(s)	215, 399, 662
BslI	CCNNNNNNNGG	2 cut(s)	32, 462
BsnI	GGCC	1 cut(s)	54
Bsp1286I	GDGCHC	1 cut(s)	647
Bsp13I	TCCGGA	1 cut(s)	661
Bsp143I	GATC	5 cut(s)	124, 147, 289, 385, 486
BspACI	CCGC	2 cut(s)	699, 934
BspANI	GGCC	1 cut(s)	54
BspCNI	CTCAG	1 cut(s)	120
BspEI	TCCGGA	1 cut(s)	661
BspLI	GGNNCC	1 cut(s)	571
BspMAI	CTGCAG	1 cut(s)	612
BspMI	ACCTGC	1 cut(s)	547
BspPI	GGATC	1 cut(s)	155
BspQI	GCTCTTC	1 cut(s)	635
BsrDI	GCAATG	2 cut(s)	37, 430
BsrI	ACTGG	2 cut(s)	505, 776
BssECI	CCNNGG	1 cut(s)	399
BssMI	GATC	5 cut(s)	124, 147, 289, 385, 486
Bst2UI	CCWGG	1 cut(s)	118
Bst6I	CTCTTC	3 cut(s)	280, 635, 750
BstC8I	GCNNGC	1 cut(s)	568
BstDEI	CTNAG	2 cut(s)	128, 281
BstF5I	GGATG	4 cut(s)	10, 113, 172, 658
BstKTI	GATC	5 cut(s)	127, 150, 292, 388, 489
BstMBI	GATC	5 cut(s)	124, 147, 289, 385, 486
BstNI	CCWGG	1 cut(s)	118
BstNSI	RCATGY	2 cut(s)	256, 769
BstSCI	CCNGG	3 cut(s)	116, 213, 398
BstSFI	CTRYAG	1 cut(s)	608
BstV2I	GAAGAC	1 cut(s)	127
BsuI	GTATCC	1 cut(s)	211
BsuRI	GGCC	1 cut(s)	54
BtgZI	GCGATG	1 cut(s)	475
BtsCI	GGATG	4 cut(s)	10, 113, 172, 658
BtsIMutI	CAGTG	2 cut(s)	498, 531
BveI	ACCTGC	1 cut(s)	547
Cac8I	GCNNGC	1 cut(s)	568
Csp6I	GTAC	4 cut(s)	85, 256, 769, 900
CviAII	CATG	4 cut(s)	253, 469, 766, 813
CviJI	RGCY	4 cut(s)	44, 54, 570, 937
CviKI_1	RGCY	4 cut(s)	44, 54, 570, 937
CviQI	GTAC	4 cut(s)	85, 256, 769, 900
DdeI	CTNAG	2 cut(s)	128, 281
DpnI	GATC	5 cut(s)	126, 149, 291, 387, 488
DpnII	GATC	5 cut(s)	124, 147, 289, 385, 486
Eam1104I	CTCTTC	3 cut(s)	280, 635, 750
EarI	CTCTTC	3 cut(s)	280, 635, 750
Eco57I	CTGAAG	1 cut(s)	41
EcoRII	CCWGG	1 cut(s)	116
FaeI	CATG	4 cut(s)	256, 472, 769, 816
FatI	CATG	4 cut(s)	252, 468, 765, 812
FauNDI	CATATG	1 cut(s)	13
Fnu4HI	GCNGC	1 cut(s)	935
FokI	GGATG	4 cut(s)	17, 100, 179, 665
Fsp4HI	GCNGC	1 cut(s)	935
FspBI	CTAG	1 cut(s)	249
GluI	GCNGC	1 cut(s)	935
GsuI	CTGGAG	1 cut(s)	793
HaeIII	GGCC	1 cut(s)	54
HapII	CCGG	3 cut(s)	215, 399, 662
Hin1II	CATG	4 cut(s)	256, 472, 769, 816
HinfI	GANTC	6 cut(s)	132, 170, 440, 479, 504, 695
HpaII	CCGG	3 cut(s)	215, 399, 662
HphI	GGTGA	2 cut(s)	47, 815
Hpy166II	GTNNAC	4 cut(s)	298, 348, 559, 806
Hpy188I	TCNGA	8 cut(s)	60, 129, 189, 262, 310, 484, 623, 921
Hpy188III	TCNNGA	3 cut(s)	579, 662, 928
Hpy8I	GTNNAC	4 cut(s)	298, 348, 559, 806
HpyAV	CCTTC	2 cut(s)	65, 583
HpyCH4IV	ACGT	1 cut(s)	561
HpyCH4V	TGCA	3 cut(s)	542, 610, 656
HpyF3I	CTNAG	2 cut(s)	128, 281
HpySE526I	ACGT	1 cut(s)	561
Hsp92II	CATG	4 cut(s)	256, 472, 769, 816
Kpn2I	TCCGGA	1 cut(s)	661
Kzo9I	GATC	5 cut(s)	124, 147, 289, 385, 486
LguI	GCTCTTC	1 cut(s)	635
LmnI	GCTCC	2 cut(s)	465, 575
LweI	GCATC	1 cut(s)	643
MaeI	CTAG	1 cut(s)	249
MaeII	ACGT	1 cut(s)	561
MaeIII	GTNAC	1 cut(s)	316
MalI	GATC	5 cut(s)	126, 149, 291, 387, 488
MboI	GATC	5 cut(s)	124, 147, 289, 385, 486
MboII	GAAGA	8 cut(s)	127, 264, 297, 323, 499, 652, 767, 809
MhlI	GDGCHC	1 cut(s)	647
MluCI	AATT	7 cut(s)	63, 104, 362, 472, 657, 733, 846
MlyI	GAGTC	2 cut(s)	141, 704
MmeI	TCCRAC	1 cut(s)	823
MnlI	CCTC	9 cut(s)	203, 216, 361, 547, 709, 745, 768, 771, 924
MroI	TCCGGA	1 cut(s)	661
MseI	TTAA	3 cut(s)	159, 525, 596
MslI	CAYNNNNRTG	1 cut(s)	323
MspA1I	CMGCKG	1 cut(s)	701
MspI	CCGG	3 cut(s)	215, 399, 662
MspR9I	CCNGG	3 cut(s)	118, 215, 400
MvaI	CCWGG	1 cut(s)	118
NciI	CCSGG	2 cut(s)	215, 400
NdeI	CATATG	1 cut(s)	13
NdeII	GATC	5 cut(s)	124, 147, 289, 385, 486
NlaIII	CATG	4 cut(s)	256, 472, 769, 816
NlaIV	GGNNCC	1 cut(s)	571
NmuCI	GTSAC	1 cut(s)	316
NspI	RCATGY	2 cut(s)	256, 769
OliI	CACNNNNGTG	1 cut(s)	323
PciSI	GCTCTTC	1 cut(s)	635
PfeI	GAWTC	4 cut(s)	170, 440, 479, 504
PflMI	CCANNNNNTGG	2 cut(s)	32, 462
PkrI	GCNGC	1 cut(s)	936
PleI	GAGTC	2 cut(s)	140, 703
PpsI	GAGTC	2 cut(s)	140, 703
Psp6I	CCWGG	1 cut(s)	116
PspGI	CCWGG	1 cut(s)	116
PspN4I	GGNNCC	1 cut(s)	571
PstI	CTGCAG	1 cut(s)	612
RsaI	GTAC	4 cut(s)	86, 257, 770, 901
RsaNI	GTAC	4 cut(s)	85, 256, 769, 900
RseI	CAYNNNNRTG	1 cut(s)	323
SapI	GCTCTTC	1 cut(s)	635
SaqAI	TTAA	3 cut(s)	159, 525, 596
SatI	GCNGC	1 cut(s)	935
Sau3AI	GATC	5 cut(s)	124, 147, 289, 385, 486
ScaI	AGTACT	1 cut(s)	86
SchI	GAGTC	2 cut(s)	141, 704
ScrFI	CCNGG	3 cut(s)	118, 215, 400
SduI	GDGCHC	1 cut(s)	647
SetI	ASST	7 cut(s)	165, 347, 372, 541, 558, 564, 720
SfaNI	GCATC	1 cut(s)	643
SfcI	CTRYAG	1 cut(s)	608
SmiMI	CAYNNNNRTG	1 cut(s)	323
Sse9I	AATT	7 cut(s)	63, 104, 362, 472, 657, 733, 846
SsiI	CCGC	2 cut(s)	699, 934
SspMI	CTAG	1 cut(s)	249
StyD4I	CCNGG	3 cut(s)	116, 213, 398
TaiI	ACGT	1 cut(s)	564
TasI	AATT	7 cut(s)	63, 104, 362, 472, 657, 733, 846
TatI	WGTACW	3 cut(s)	84, 255, 768
TauI	GCSGC	1 cut(s)	937
TfiI	GAWTC	4 cut(s)	170, 440, 479, 504
Tru1I	TTAA	3 cut(s)	159, 525, 596
Tru9I	TTAA	3 cut(s)	159, 525, 596
TscAI	CASTG	2 cut(s)	505, 538
TseFI	GTSAC	1 cut(s)	316
Tsp45I	GTSAC	1 cut(s)	316
TspDTI	ATGAA	3 cut(s)	183, 485, 684
TspRI	CASTG	2 cut(s)	505, 538
Van91I	CCANNNNNTGG	2 cut(s)	32, 462
XapI	RAATTY	1 cut(s)	362
XceI	RCATGY	2 cut(s)	256, 769
XspI	CTAG	1 cut(s)	249
ZrmI	AGTACT	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.