Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001242

Physical Location & Seq

Genomic Coordinates Reverse (-)

59866537 .. 59870046

Gene Structure 3510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG413700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGATGTTCCTTATGAAACAACACCAAGCAATGGTGAAGTGGCCAATCACGGCCTTCAGATTATTAGATACTCTCCTTACCAGCACAACAGTAAATTATCATCACCCTGGTTTGATCTGAGAGTCTTCTATGTAAGGATCAGCAACTTTATGGTGGATGAATCTACCCCCAAGTTTCTGACCCTCATCCATATTCCTCTAAGCCCAGATACCCTTTTGGAAGTAAACGGTGCAAAAACTAGCATGTACTCTGATGGTGTATCTTCACATCTTAGAAGGGATCGGGTGGACAAGAAATCCGAAGAAGTCACATTTGTGAATACAGACAGCATAAGGTTCACAGGGAGTGTGAAATTTGAGGTGTTTGATAAAGATGATCTTATTCTCTCCGGGGTGTTAGATATGTCTAATAGCAATGGTTTCGTTGGGGAATCAAAGAACAATGCCAAGCGATGGAGCATGAATTGTGAATCGGAGATCACTGCTGGCACTGGATTTTTCAAGGGAAAACAACTTAATGGCACTGAATCACCTGCACCGAGCATTGAGGTTTACGTTGCTGGCTCCTTCTCTGGAACACCAATCATCTTAACCAAGACCCTGCAGATTAGTTTCCGAAAGAAGCACAATAGGAAGAGCACTTTGGATGCAATTCCGGAGTATGAAGCAACTGAATTGCAGAAAGATGAGTCTCCTGACCTTGATACGGAGGTACATAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

240

Amino Acids

26.87

Weight (kDa)

5.42

Isoelectric Point (pI)

47.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19400 AT1G19400 AT1G19400 AT1G19400 AT1G75180 AT1G75180 AT1G75180 AT1G75180
fragaria_vesca	FvH4_2g08760 FvH4_2g39840 FvH4_2g39840 FvH4_2g39840
malus_domestica	MD08G1032000.v1.1 MD10G1076500.v1.1 MD15G1028000.v1.1
prunus_persica	Prupe.1G379700_v2.0.a1 Prupe.1G379700_v2.0.a1 Prupe.1G379700_v2.0.a1 Prupe.1G379700_v2.0.a1 Prupe.8G097300_v2.0.a1 Prupe.8G097300_v2.0.a1 Prupe.8G097300_v2.0.a1 Prupe.8G097300_v2.0.a1
pyrus_communis	pycom08g02530 pycom15g02400
rosa_chinensis	RchiOBHm_Chr6g0264221 RchiOBHm_Chr6g0301001
rosa_laevigata	RLG00000011286 RLG00000014279
rosa_multiflora	Rmu_co8302127.1_g000001 Rmu_sc0003168.1_g000005 Rmu_sc0005114.1_g000014
rosa_roxburghii	Rroxscaffold_176G00431620 Rroxscaffold_7G00167270 Rroxscaffold_7G00203390
rosa_rugosa	Rorug06G0010200 Rorug06G0010300 Rorug06G0010400 Rorug06G0010500.1 Rorug06G0010600 Rorug06G0010600 Rorug06G0010700 Rorug06G0010800 Rorug06G0010900 Rorug06G0011000 Rorug06G0299900
rosa_samantha	Rh6AG130300 Rh6AG413800 Rh6BG127600 Rh6BG420700 Rh6CG126200 Rh6CG428300 Rh6DG112900 Rh6DG413700
rosa_wichuraiana	Rw6G011350 Rw6G011410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	541
Acc36I	ACCTGC	1 cut(s)	541
AccB7I	CCANNNNNTGG	2 cut(s)	32, 453
AccIII	TCCGGA	1 cut(s)	655
AclWI	GGATC	2 cut(s)	146, 288
AcoI	YGGCCR	1 cut(s)	42
AcsI	RAATTY	1 cut(s)	353
AcuI	CTGAAG	1 cut(s)	41
AfaI	GTAC	2 cut(s)	248, 714
AfiI	CCNNNNNNNGG	3 cut(s)	32, 453, 706
AgsI	TTSAA	1 cut(s)	502
AjnI	CCWGG	1 cut(s)	107
AjuI	GAANNNNNNNTTGG	2 cut(s)	626, 658
AleI	CACNNNNGTG	1 cut(s)	314
Alw21I	GWGCWC	1 cut(s)	641
Alw26I	GTCTC	1 cut(s)	696
AlwI	GGATC	2 cut(s)	146, 288
Aor13HI	TCCGGA	1 cut(s)	655
AoxI	GGCC	2 cut(s)	42, 52
ApoI	RAATTY	1 cut(s)	353
AsuC2I	CCSGG	1 cut(s)	391
AsuHPI	GGTGA	3 cut(s)	47, 96, 522
BaeI	ACNNNNGTAYC	1 cut(s)	696
BalI	TGGCCA	1 cut(s)	44
BbsI	GAAGAC	1 cut(s)	118
Bbv12I	GWGCWC	1 cut(s)	641
BccI	CCATC	2 cut(s)	248, 447
BceAI	ACGGC	1 cut(s)	67
BcgI	CGANNNNNNTGC	2 cut(s)	403, 437
BciT130I	CCWGG	1 cut(s)	109
BcnI	CCSGG	1 cut(s)	391
BcoDI	GTCTC	1 cut(s)	696
BfaI	CTAG	1 cut(s)	240
BfmI	CTRYAG	1 cut(s)	602
BfuAI	ACCTGC	1 cut(s)	541
Bme1390I	CCNGG	2 cut(s)	109, 391
BmiI	GGNNCC	1 cut(s)	565
BmrFI	CCNGG	2 cut(s)	109, 391
BmsI	GCATC	1 cut(s)	637
BpiI	GAAGAC	1 cut(s)	118
BpuMI	CCSGG	1 cut(s)	391
BsaJI	CCNNGG	2 cut(s)	107, 390
BsaWI	WCCGGW	1 cut(s)	655
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 453, 706
Bse1I	ACTGG	1 cut(s)	496
Bse3DI	GCAATG	2 cut(s)	37, 421
BseAI	TCCGGA	1 cut(s)	655
BseBI	CCWGG	1 cut(s)	109
BseDI	CCNNGG	2 cut(s)	107, 390
BseGI	GGATG	4 cut(s)	10, 163, 186, 652
BseLI	CCNNNNNNNGG	3 cut(s)	32, 453, 706
BseMI	GCAATG	2 cut(s)	37, 421
BseMII	CTCAG	1 cut(s)	110
BseNI	ACTGG	1 cut(s)	496
BsgI	GTGCAG	1 cut(s)	519
BshFI	GGCC	2 cut(s)	44, 54
BsiHKAI	GWGCWC	1 cut(s)	641
BsiSI	CCGG	2 cut(s)	390, 656
BslI	CCNNNNNNNGG	3 cut(s)	32, 453, 706
BsmAI	GTCTC	1 cut(s)	696
BsnI	GGCC	2 cut(s)	44, 54
Bsp1286I	GDGCHC	1 cut(s)	641
Bsp13I	TCCGGA	1 cut(s)	655
Bsp143I	GATC	5 cut(s)	115, 138, 280, 376, 477
BspANI	GGCC	2 cut(s)	44, 54
BspCNI	CTCAG	1 cut(s)	111
BspEI	TCCGGA	1 cut(s)	655
BspLI	GGNNCC	1 cut(s)	565
BspMAI	CTGCAG	1 cut(s)	606
BspMI	ACCTGC	1 cut(s)	541
BspPI	GGATC	2 cut(s)	146, 288
BspQI	GCTCTTC	1 cut(s)	629
BsrDI	GCAATG	2 cut(s)	37, 421
BsrI	ACTGG	1 cut(s)	496
BssECI	CCNNGG	2 cut(s)	107, 390
BssMI	GATC	5 cut(s)	115, 138, 280, 376, 477
Bst2UI	CCWGG	1 cut(s)	109
Bst4CI	ACNGT	2 cut(s)	92, 230
Bst6I	CTCTTC	1 cut(s)	629
BstC8I	GCNNGC	2 cut(s)	487, 562
BstDEI	CTNAG	3 cut(s)	119, 200, 272
BstF5I	GGATG	4 cut(s)	10, 163, 186, 652
BstKTI	GATC	5 cut(s)	118, 141, 283, 379, 480
BstMAI	GTCTC	1 cut(s)	696
BstMBI	GATC	5 cut(s)	115, 138, 280, 376, 477
BstNI	CCWGG	1 cut(s)	109
BstNSI	RCATGY	1 cut(s)	247
BstSCI	CCNGG	2 cut(s)	107, 389
BstSFI	CTRYAG	1 cut(s)	602
BstV2I	GAAGAC	1 cut(s)	118
BsuRI	GGCC	2 cut(s)	44, 54
BtgZI	GCGATG	1 cut(s)	466
BtsCI	GGATG	4 cut(s)	10, 163, 186, 652
BtsI	GCAGTG	1 cut(s)	480
BtsIMutI	CAGTG	3 cut(s)	480, 489, 522
BveI	ACCTGC	1 cut(s)	541
Cac8I	GCNNGC	2 cut(s)	487, 562
Csp6I	GTAC	2 cut(s)	247, 713
CviAII	CATG	2 cut(s)	244, 460
CviJI	RGCY	4 cut(s)	44, 54, 204, 564
CviKI_1	RGCY	4 cut(s)	44, 54, 204, 564
CviQI	GTAC	2 cut(s)	247, 713
DdeI	CTNAG	3 cut(s)	119, 200, 272
DpnI	GATC	5 cut(s)	117, 140, 282, 378, 479
DpnII	GATC	5 cut(s)	115, 138, 280, 376, 477
EaeI	YGGCCR	1 cut(s)	42
Eam1104I	CTCTTC	1 cut(s)	629
EarI	CTCTTC	1 cut(s)	629
Eco57I	CTGAAG	1 cut(s)	41
EcoRII	CCWGG	1 cut(s)	107
FaeI	CATG	2 cut(s)	247, 463
FalI	AAGNNNNNCTT	2 cut(s)	363, 395
FatI	CATG	2 cut(s)	243, 459
FokI	GGATG	4 cut(s)	17, 170, 173, 659
FspBI	CTAG	1 cut(s)	240
HaeIII	GGCC	2 cut(s)	44, 54
HapII	CCGG	2 cut(s)	390, 656
Hin1II	CATG	2 cut(s)	247, 463
HinfI	GANTC	6 cut(s)	123, 161, 431, 470, 527, 689
HpaII	CCGG	2 cut(s)	390, 656
HphI	GGTGA	3 cut(s)	47, 96, 522
Hpy166II	GTNNAC	4 cut(s)	226, 289, 339, 553
Hpy188I	TCNGA	7 cut(s)	60, 120, 180, 253, 301, 475, 617
Hpy188III	TCNNGA	3 cut(s)	573, 656, 695
Hpy8I	GTNNAC	4 cut(s)	226, 289, 339, 553
HpyAV	CCTTC	3 cut(s)	65, 270, 577
HpyCH4III	ACNGT	2 cut(s)	92, 230
HpyCH4IV	ACGT	1 cut(s)	555
HpyCH4V	TGCA	5 cut(s)	233, 536, 604, 650, 679
HpyF3I	CTNAG	3 cut(s)	119, 200, 272
HpySE526I	ACGT	1 cut(s)	555
Hsp92II	CATG	2 cut(s)	247, 463
Kpn2I	TCCGGA	1 cut(s)	655
Kzo9I	GATC	5 cut(s)	115, 138, 280, 376, 477
LguI	GCTCTTC	1 cut(s)	629
LmnI	GCTCC	2 cut(s)	456, 569
LweI	GCATC	1 cut(s)	637
MaeI	CTAG	1 cut(s)	240
MaeII	ACGT	1 cut(s)	555
MaeIII	GTNAC	1 cut(s)	307
MalI	GATC	5 cut(s)	117, 140, 282, 378, 479
MboI	GATC	5 cut(s)	115, 138, 280, 376, 477
MboII	GAAGA	4 cut(s)	118, 255, 314, 646
MhlI	GDGCHC	1 cut(s)	641
MlsI	TGGCCA	1 cut(s)	44
MluCI	AATT	5 cut(s)	95, 353, 463, 651, 674
MluNI	TGGCCA	1 cut(s)	44
MlyI	GAGTC	2 cut(s)	132, 698
MnlI	CCTC	5 cut(s)	194, 207, 352, 541, 703
Mox20I	TGGCCA	1 cut(s)	44
MroI	TCCGGA	1 cut(s)	655
MscI	TGGCCA	1 cut(s)	44
MseI	TTAA	3 cut(s)	516, 590, 721
MslI	CAYNNNNRTG	1 cut(s)	314
Msp20I	TGGCCA	1 cut(s)	44
MspI	CCGG	2 cut(s)	390, 656
MspR9I	CCNGG	2 cut(s)	109, 391
MvaI	CCWGG	1 cut(s)	109
NciI	CCSGG	1 cut(s)	391
NdeII	GATC	5 cut(s)	115, 138, 280, 376, 477
NlaIII	CATG	2 cut(s)	247, 463
NlaIV	GGNNCC	1 cut(s)	565
NmuCI	GTSAC	1 cut(s)	307
NspI	RCATGY	1 cut(s)	247
OliI	CACNNNNGTG	1 cut(s)	314
PaqCI	CACCTGC	1 cut(s)	541
PciSI	GCTCTTC	1 cut(s)	629
PfeI	GAWTC	4 cut(s)	161, 431, 470, 527
PflMI	CCANNNNNTGG	2 cut(s)	32, 453
PleI	GAGTC	2 cut(s)	131, 697
PpsI	GAGTC	2 cut(s)	131, 697
Psp6I	CCWGG	1 cut(s)	107
PspGI	CCWGG	1 cut(s)	107
PspN4I	GGNNCC	1 cut(s)	565
PstI	CTGCAG	1 cut(s)	606
RsaI	GTAC	2 cut(s)	248, 714
RsaNI	GTAC	2 cut(s)	247, 713
RseI	CAYNNNNRTG	1 cut(s)	314
SapI	GCTCTTC	1 cut(s)	629
SaqAI	TTAA	3 cut(s)	516, 590, 721
Sau3AI	GATC	5 cut(s)	115, 138, 280, 376, 477
SchI	GAGTC	2 cut(s)	132, 698
ScrFI	CCNGG	2 cut(s)	109, 391
SduI	GDGCHC	1 cut(s)	641
SetI	ASST	7 cut(s)	338, 363, 535, 552, 558, 702, 714
SfaNI	GCATC	1 cut(s)	637
SfcI	CTRYAG	1 cut(s)	602
SmiMI	CAYNNNNRTG	1 cut(s)	314
Sse9I	AATT	5 cut(s)	95, 353, 463, 651, 674
SspMI	CTAG	1 cut(s)	240
StyD4I	CCNGG	2 cut(s)	107, 389
TaaI	ACNGT	2 cut(s)	92, 230
TaiI	ACGT	1 cut(s)	558
TasI	AATT	5 cut(s)	95, 353, 463, 651, 674
TatI	WGTACW	1 cut(s)	246
TfiI	GAWTC	4 cut(s)	161, 431, 470, 527
Tru1I	TTAA	3 cut(s)	516, 590, 721
Tru9I	TTAA	3 cut(s)	516, 590, 721
TscAI	CASTG	3 cut(s)	487, 496, 529
TseFI	GTSAC	1 cut(s)	307
Tsp45I	GTSAC	1 cut(s)	307
TspDTI	ATGAA	4 cut(s)	30, 174, 476, 678
TspGWI	ACGGA	1 cut(s)	722
TspRI	CASTG	3 cut(s)	487, 496, 529
Van91I	CCANNNNNTGG	2 cut(s)	32, 453
XapI	RAATTY	1 cut(s)	353
XceI	RCATGY	1 cut(s)	247
XspI	CTAG	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.