Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001242

Physical Location & Seq

Genomic Coordinates Reverse (-)

15041367 .. 15053211

Gene Structure 11845 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG126200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGAAAATTCTTATGAGACATCAAACAGCCACACACCTATTTTCAATGGCTATGCACCTACTTCAAATGGCTATGGACCTATTTCAAATGGTCGTGGGTCAACTGGTGATGGCCACATGATTGGGAGACAATCCACCTACCAACCCAAGGTGTCACTACCTTGGCTTGATGTAAGAGTTTTCTATGTTAGGATTAGCAAATGTGAGATTGATGATTCGGCTCCAGAATTCCTCACGGTAAATCACATTCCATTGGATGCTGATACCCTTCTTGAAGTCAATGGTGTTAGAACTAGCATGTATTCAGATGGGGAAACAACTCTTCTTCGAAGAGACCGGTTAGATAAGAAGTCAGAAGAAGCTACGTTTGTCAGCACTGATAGTATAAGGATGACTGGAAGTGTGAAGTTTGAGGTTTTTGACAAGGATGTTATCGTGCTATCTGGGGTTTTAGAGTTGTGTAATAATATTGGTTTCATTGCGGAAACAGATCATCATGGCCCGAGATGGAGCATGAATTGTGAAACAAATATAGTTGCAAGCACTGGCTTCTTTAAACCAAAGCAGTTTACGGGTTCAGAGTCTGCAACACCCTCAATTGAAGTATACATTGCAGGGTCCTTCTTGGGAACTCCAATAATTCTAACAAAGACTTTACAGCTGAGTCCTTGGAAGAAGCATACGAGGAAGGGGTTATTGGATTCAATACCAGAGTATGATGCAACTGAAGACGAGAACAATAATCCTTCTAGGTTCATGTTTCAGGTATTTATATGCTCCCTATTTAGTATGGTTGCAGACTTAATTATACGTAATCTGCTAGTTGGATTTGTCCTGCCCTTTGTTGTGACAATGTTTCATTTACCATGCTCATGCTTGATACAGAGTTTGTTACTGGTCATACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

302

Amino Acids

33.64

Weight (kDa)

5.28

Isoelectric Point (pI)

36.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0001242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19400 AT1G19400 AT1G19400 AT1G19400 AT1G75180 AT1G75180 AT1G75180 AT1G75180
fragaria_vesca	FvH4_2g08760 FvH4_2g39840 FvH4_2g39840 FvH4_2g39840
malus_domestica	MD08G1032000.v1.1 MD10G1076500.v1.1 MD15G1028000.v1.1
prunus_persica	Prupe.1G379700_v2.0.a1 Prupe.1G379700_v2.0.a1 Prupe.1G379700_v2.0.a1 Prupe.1G379700_v2.0.a1 Prupe.8G097300_v2.0.a1 Prupe.8G097300_v2.0.a1 Prupe.8G097300_v2.0.a1 Prupe.8G097300_v2.0.a1
pyrus_communis	pycom08g02530 pycom15g02400
rosa_chinensis	RchiOBHm_Chr6g0264221 RchiOBHm_Chr6g0301001
rosa_laevigata	RLG00000011286 RLG00000014279
rosa_multiflora	Rmu_co8302127.1_g000001 Rmu_sc0003168.1_g000005 Rmu_sc0005114.1_g000014
rosa_roxburghii	Rroxscaffold_176G00431620 Rroxscaffold_7G00167270 Rroxscaffold_7G00203390
rosa_rugosa	Rorug06G0010200 Rorug06G0010300 Rorug06G0010400 Rorug06G0010500.1 Rorug06G0010600 Rorug06G0010600 Rorug06G0010700 Rorug06G0010800 Rorug06G0010900 Rorug06G0011000 Rorug06G0299900
rosa_samantha	Rh6AG130300 Rh6AG413800 Rh6BG127600 Rh6BG420700 Rh6CG126200 Rh6CG428300 Rh6DG112900 Rh6DG413700
rosa_wichuraiana	Rw6G011350 Rw6G011410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	606
AciI	CCGC	1 cut(s)	482
AcoI	YGGCCR	1 cut(s)	112
AcsI	RAATTY	2 cut(s)	7, 227
AcuI	CTGAAG	1 cut(s)	747
AfiI	CCNNNNNNNGG	1 cut(s)	148
AgeI	ACCGGT	1 cut(s)	336
AgsI	TTSAA	6 cut(s)	46, 66, 87, 275, 602, 705
AjuI	GAANNNNNNNTTGG	2 cut(s)	680, 712
AluBI	AGCT	2 cut(s)	362, 661
AluI	AGCT	2 cut(s)	362, 661
Alw26I	GTCTC	3 cut(s)	11, 121, 327
AlwNI	CAGNNNCTG	1 cut(s)	584
Ama87I	CYCGRG	1 cut(s)	502
AoxI	GGCC	2 cut(s)	112, 499
ApoI	RAATTY	2 cut(s)	7, 227
AsiGI	ACCGGT	1 cut(s)	336
AspS9I	GGNCC	3 cut(s)	77, 500, 618
AsuHPI	GGTGA	1 cut(s)	119
AsuII	TTCGAA	1 cut(s)	328
AvaI	CYCGRG	1 cut(s)	502
AvaII	GGWCC	2 cut(s)	77, 618
BalI	TGGCCA	1 cut(s)	114
BbsI	GAAGAC	1 cut(s)	735
BccI	CCATC	3 cut(s)	104, 302, 501
BcoDI	GTCTC	3 cut(s)	11, 121, 327
BfaI	CTAG	3 cut(s)	294, 750, 821
Bme18I	GGWCC	2 cut(s)	77, 618
BmeT110I	CYCGRG	1 cut(s)	502
BmgT120I	GGNCC	3 cut(s)	77, 500, 618
BmiI	GGNNCC	2 cut(s)	222, 619
BmsI	GCATC	2 cut(s)	247, 709
BpiI	GAAGAC	1 cut(s)	735
BpmI	CTGGAG	1 cut(s)	207
Bpu14I	TTCGAA	1 cut(s)	328
BsaAI	YACGTR	1 cut(s)	812
BsaI	GGTCTC	1 cut(s)	327
BsaJI	CCNNGG	3 cut(s)	147, 161, 668
BsaWI	WCCGGW	1 cut(s)	336
Bsc4I	CCNNNNNNNGG	1 cut(s)	148
Bse118I	RCCGGY	1 cut(s)	336
Bse1I	ACTGG	4 cut(s)	109, 400, 550, 900
Bse3DI	GCAATG	2 cut(s)	477, 609
BseDI	CCNNGG	3 cut(s)	147, 161, 668
BseGI	GGATG	3 cut(s)	262, 396, 433
BseLI	CCNNNNNNNGG	1 cut(s)	148
BseMI	GCAATG	2 cut(s)	477, 609
BseMII	CTCAG	1 cut(s)	653
BseNI	ACTGG	4 cut(s)	109, 400, 550, 900
BshFI	GGCC	2 cut(s)	114, 501
BshTI	ACCGGT	1 cut(s)	336
BsiHKCI	CYCGRG	1 cut(s)	502
BsiSI	CCGG	1 cut(s)	337
BslI	CCNNNNNNNGG	1 cut(s)	148
BsmAI	GTCTC	3 cut(s)	11, 121, 327
BsnI	GGCC	2 cut(s)	114, 501
Bso31I	GGTCTC	1 cut(s)	327
BsoBI	CYCGRG	1 cut(s)	502
Bsp119I	TTCGAA	1 cut(s)	328
Bsp143I	GATC	1 cut(s)	490
BspACI	CCGC	1 cut(s)	482
BspANI	GGCC	2 cut(s)	114, 501
BspCNI	CTCAG	1 cut(s)	654
BspLI	GGNNCC	2 cut(s)	222, 619
BspT104I	TTCGAA	1 cut(s)	328
BspTNI	GGTCTC	1 cut(s)	327
BsrDI	GCAATG	2 cut(s)	477, 609
BsrFI	RCCGGY	1 cut(s)	336
BsrI	ACTGG	4 cut(s)	109, 400, 550, 900
BssAI	RCCGGY	1 cut(s)	336
BssECI	CCNNGG	3 cut(s)	147, 161, 668
BssMI	GATC	1 cut(s)	490
BssNAI	GTATAC	1 cut(s)	607
BssT1I	CCWWGG	3 cut(s)	147, 161, 668
Bst1107I	GTATAC	1 cut(s)	607
Bst4CI	ACNGT	2 cut(s)	238, 906
Bst6I	CTCTTC	2 cut(s)	325, 327
BstBAI	YACGTR	1 cut(s)	812
BstBI	TTCGAA	1 cut(s)	328
BstC8I	GCNNGC	1 cut(s)	541
BstDEI	CTNAG	1 cut(s)	662
BstF5I	GGATG	3 cut(s)	262, 396, 433
BstKTI	GATC	1 cut(s)	493
BstMAI	GTCTC	3 cut(s)	11, 121, 327
BstMBI	GATC	1 cut(s)	490
BstNSI	RCATGY	1 cut(s)	301
BstSNI	TACGTA	1 cut(s)	812
BstV2I	GAAGAC	1 cut(s)	735
BstXI	CCANNNNNNTGG	1 cut(s)	122
BstZ17I	GTATAC	1 cut(s)	607
BsuRI	GGCC	2 cut(s)	114, 501
BtsCI	GGATG	3 cut(s)	262, 396, 433
BtsIMutI	CAGTG	2 cut(s)	375, 543
Cac8I	GCNNGC	1 cut(s)	541
CaiI	CAGNNNCTG	1 cut(s)	584
Cfr10I	RCCGGY	1 cut(s)	336
Cfr13I	GGNCC	3 cut(s)	77, 500, 618
CspAI	ACCGGT	1 cut(s)	336
CviAII	CATG	7 cut(s)	118, 298, 497, 514, 757, 867, 873
DdeI	CTNAG	1 cut(s)	662
DpnI	GATC	1 cut(s)	492
DpnII	GATC	1 cut(s)	490
DraI	TTTAAA	1 cut(s)	556
EaeI	YGGCCR	1 cut(s)	112
Eam1104I	CTCTTC	2 cut(s)	325, 327
EarI	CTCTTC	2 cut(s)	325, 327
Eco105I	TACGTA	1 cut(s)	812
Eco130I	CCWWGG	3 cut(s)	147, 161, 668
Eco31I	GGTCTC	1 cut(s)	327
Eco47I	GGWCC	2 cut(s)	77, 618
Eco57I	CTGAAG	1 cut(s)	747
Eco88I	CYCGRG	1 cut(s)	502
EcoO109I	RGGNCCY	1 cut(s)	618
EcoRI	GAATTC	1 cut(s)	227
EcoT14I	CCWWGG	3 cut(s)	147, 161, 668
ErhI	CCWWGG	3 cut(s)	147, 161, 668
FaeI	CATG	7 cut(s)	121, 301, 500, 517, 760, 870, 876
FatI	CATG	7 cut(s)	117, 297, 496, 513, 756, 866, 872
FblI	GTMKAC	1 cut(s)	606
FokI	GGATG	3 cut(s)	269, 403, 440
FspBI	CTAG	3 cut(s)	294, 750, 821
GsuI	CTGGAG	1 cut(s)	207
HaeIII	GGCC	2 cut(s)	114, 501
HapII	CCGG	1 cut(s)	337
Hin1II	CATG	7 cut(s)	121, 301, 500, 517, 760, 870, 876
HincII	GTYRAC	1 cut(s)	102
HindII	GTYRAC	1 cut(s)	102
HinfI	GANTC	4 cut(s)	215, 581, 664, 701
HpaII	CCGG	1 cut(s)	337
HphI	GGTGA	1 cut(s)	119
Hpy166II	GTNNAC	3 cut(s)	102, 570, 607
Hpy188I	TCNGA	3 cut(s)	307, 355, 580
Hpy188III	TCNNGA	2 cut(s)	224, 272
Hpy8I	GTNNAC	3 cut(s)	102, 570, 607
HpyAV	CCTTC	4 cut(s)	278, 631, 682, 756
HpyCH4III	ACNGT	2 cut(s)	238, 906
HpyCH4IV	ACGT	2 cut(s)	365, 811
HpyCH4V	TGCA	6 cut(s)	56, 539, 587, 614, 722, 797
HpyF3I	CTNAG	1 cut(s)	662
HpySE526I	ACGT	2 cut(s)	365, 811
Hsp92II	CATG	7 cut(s)	121, 301, 500, 517, 760, 870, 876
Kzo9I	GATC	1 cut(s)	490
LmnI	GCTCC	3 cut(s)	226, 510, 782
LweI	GCATC	2 cut(s)	247, 709
MaeI	CTAG	3 cut(s)	294, 750, 821
MaeII	ACGT	2 cut(s)	365, 811
MaeIII	GTNAC	3 cut(s)	153, 847, 891
MalI	GATC	1 cut(s)	492
MboI	GATC	1 cut(s)	490
MboII	GAAGA	6 cut(s)	314, 317, 342, 368, 685, 740
MfeI	CAATTG	1 cut(s)	597
MlsI	TGGCCA	1 cut(s)	114
MluCI	AATT	6 cut(s)	7, 227, 517, 597, 639, 804
MluNI	TGGCCA	1 cut(s)	114
MlyI	GAGTC	2 cut(s)	590, 673
MmeI	TCCRAC	1 cut(s)	805
MnlI	CCTC	4 cut(s)	242, 406, 604, 678
Mox20I	TGGCCA	1 cut(s)	114
MscI	TGGCCA	1 cut(s)	114
MseI	TTAA	2 cut(s)	555, 803
MslI	CAYNNNNRTG	1 cut(s)	871
Msp20I	TGGCCA	1 cut(s)	114
MspA1I	CMGCKG	1 cut(s)	661
MspI	CCGG	1 cut(s)	337
MunI	CAATTG	1 cut(s)	597
NdeII	GATC	1 cut(s)	490
NlaIII	CATG	7 cut(s)	121, 301, 500, 517, 760, 870, 876
NlaIV	GGNNCC	2 cut(s)	222, 619
NmuCI	GTSAC	2 cut(s)	153, 847
NspI	RCATGY	1 cut(s)	301
NspV	TTCGAA	1 cut(s)	328
PfeI	GAWTC	2 cut(s)	215, 701
PinAI	ACCGGT	1 cut(s)	336
PleI	GAGTC	2 cut(s)	589, 672
PpsI	GAGTC	2 cut(s)	589, 672
Ppu21I	YACGTR	1 cut(s)	812
PpuMI	RGGWCCY	1 cut(s)	618
Psp5II	RGGWCCY	1 cut(s)	618
PspN4I	GGNNCC	2 cut(s)	222, 619
PspPI	GGNCC	3 cut(s)	77, 500, 618
PspPPI	RGGWCCY	1 cut(s)	618
PstNI	CAGNNNCTG	1 cut(s)	584
PvuII	CAGCTG	1 cut(s)	661
RseI	CAYNNNNRTG	1 cut(s)	871
SaqAI	TTAA	2 cut(s)	555, 803
Sau3AI	GATC	1 cut(s)	490
Sau96I	GGNCC	3 cut(s)	77, 500, 618
SchI	GAGTC	2 cut(s)	590, 673
SfaNI	GCATC	2 cut(s)	247, 709
SfuI	TTCGAA	1 cut(s)	328
SinI	GGWCC	2 cut(s)	77, 618
SmiMI	CAYNNNNRTG	1 cut(s)	871
SnaBI	TACGTA	1 cut(s)	812
Sse9I	AATT	6 cut(s)	7, 227, 517, 597, 639, 804
SsiI	CCGC	1 cut(s)	482
SspI	AATATT	1 cut(s)	469
SspMI	CTAG	3 cut(s)	294, 750, 821
StyI	CCWWGG	3 cut(s)	147, 161, 668
TaaI	ACNGT	2 cut(s)	238, 906
TaiI	ACGT	2 cut(s)	368, 814
TaqI	TCGA	1 cut(s)	328
TasI	AATT	6 cut(s)	7, 227, 517, 597, 639, 804
TfiI	GAWTC	2 cut(s)	215, 701
Tru1I	TTAA	2 cut(s)	555, 803
Tru9I	TTAA	2 cut(s)	555, 803
TscAI	CASTG	2 cut(s)	382, 550
TseFI	GTSAC	2 cut(s)	153, 847
Tsp45I	GTSAC	2 cut(s)	153, 847
TspDTI	ATGAA	4 cut(s)	466, 530, 745, 848
TspRI	CASTG	2 cut(s)	382, 550
VpaK11BI	GGWCC	2 cut(s)	77, 618
XapI	RAATTY	2 cut(s)	7, 227
XceI	RCATGY	1 cut(s)	301
XmiI	GTMKAC	1 cut(s)	606
XspI	CTAG	3 cut(s)	294, 750, 821

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.