Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0001242

Physical Location & Seq

Genomic Coordinates Forward (+)

12916465 .. 12919952

Gene Structure 3488 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G097300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGGTAATTTTTATGAGGCATCAAATGGCCATGGGCCAACTGATAATGGCCAACTTGTTGTGAGGCAATCCAACTACCAACCCTGCGTCAAGGTATCACTACCCTGGCTTGATGTAAGAGTCTTTTATGTTAGAATTAGCAAATGCGAGATCGATGATTCTGCTCCAGAATTCCTCACAGTAAATCATATTCCATTGGATCCTGATACGCTTCTTGAAGTCAATGGTGTTAGAACTAGCATCAATTCAGATGGGGCAACAACTCTTCTTCGAAGGGACCGGTTAGATAAGAAGTCTGAAGAAGCTACATTTGTGAGCACTGACAGTATAAGAATGACTGGAAGTGTAAAGTTTGAGGTTTTCGATAAAGATGTTGTTGTGCTATCTGGGGTTTTAGAACTGTGTAATAGTAATGGTTTCAATGCAGAAACAGATCACCATGGCCAGAGATGGAGCATGAATTGTGAATCTGATATAAGTGCAAGCAGTGGCTTCCTTAAAGGAAAGCAATTTACCGGTGCAGAATCTGCTTCACCTTTAATTGAGGTATACATCGCGGGGTCCTTCTCGGGCACTCCAATAATTTTAACAAAGACTTTGCAGCTTGGCCTTTGGAAGAAGCATGTGAGGAAAGGGTTGTTGGATTCCATACCAGAGTATGAGGCAACTGAAAACCAGAGGAACAATCCTTCTAGATTTGATTTTCAGGAGTCGGAATACTCATATTACAAACCAGAAAATGGAGAAAACATGTACTGGGGGACAGCATATGTAGAAGGTGAAGATGGAGAGCTTTCATGGTTCAATGCTGGTGTGAGAGTGGGTGTTGGGATTGGCTTGAGCATATGTGTCGGGGTTGGCATTGGAGTTGGGTTGCTCATACGAACCTACCAAGGCACCACCCGGAACTTTAGAAGGCAGCTACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

310

Amino Acids

34.31

Weight (kDa)

5.18

Isoelectric Point (pI)

30.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19400 AT1G19400 AT1G19400 AT1G19400 AT1G75180 AT1G75180 AT1G75180 AT1G75180
fragaria_vesca	FvH4_2g08760 FvH4_2g39840 FvH4_2g39840 FvH4_2g39840
malus_domestica	MD08G1032000.v1.1 MD10G1076500.v1.1 MD15G1028000.v1.1
prunus_persica	Prupe.1G379700_v2.0.a1 Prupe.1G379700_v2.0.a1 Prupe.1G379700_v2.0.a1 Prupe.1G379700_v2.0.a1 Prupe.8G097300_v2.0.a1 Prupe.8G097300_v2.0.a1 Prupe.8G097300_v2.0.a1 Prupe.8G097300_v2.0.a1
pyrus_communis	pycom08g02530 pycom15g02400
rosa_chinensis	RchiOBHm_Chr6g0264221 RchiOBHm_Chr6g0301001
rosa_laevigata	RLG00000011286 RLG00000014279
rosa_multiflora	Rmu_co8302127.1_g000001 Rmu_sc0003168.1_g000005 Rmu_sc0005114.1_g000014
rosa_roxburghii	Rroxscaffold_176G00431620 Rroxscaffold_7G00167270 Rroxscaffold_7G00203390
rosa_rugosa	Rorug06G0010200 Rorug06G0010300 Rorug06G0010400 Rorug06G0010500.1 Rorug06G0010600 Rorug06G0010600 Rorug06G0010700 Rorug06G0010800 Rorug06G0010900 Rorug06G0011000 Rorug06G0299900
rosa_samantha	Rh6AG130300 Rh6AG413800 Rh6BG127600 Rh6BG420700 Rh6CG126200 Rh6CG428300 Rh6DG112900 Rh6DG413700
rosa_wichuraiana	Rw6G011350 Rw6G011410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	896
AccB7I	CCANNNNNTGG	1 cut(s)	740
AccI	GTMKAC	1 cut(s)	549
AccII	CGCG	1 cut(s)	557
AciI	CCGC	1 cut(s)	557
AclWI	GGATC	2 cut(s)	194, 207
AcoI	YGGCCR	3 cut(s)	28, 49, 442
AcsI	RAATTY	1 cut(s)	170
AcuI	CTGAAG	1 cut(s)	318
AfaI	GTAC	1 cut(s)	755
AfiI	CCNNNNNNNGG	1 cut(s)	740
AflIII	ACRYGT	1 cut(s)	750
AgeI	ACCGGT	2 cut(s)	279, 515
AgsI	TTSAA	3 cut(s)	218, 421, 805
AjnI	CCWGG	1 cut(s)	104
AjuI	GAANNNNNNNTTGG	2 cut(s)	623, 655
AluBI	AGCT	4 cut(s)	305, 604, 793, 922
AluI	AGCT	4 cut(s)	305, 604, 793, 922
Alw21I	GWGCWC	1 cut(s)	320
AlwI	GGATC	2 cut(s)	194, 207
AlwNI	CAGNNNCTG	2 cut(s)	527, 925
Ama87I	CYCGRG	1 cut(s)	568
AoxI	GGCC	5 cut(s)	28, 35, 49, 442, 607
ApeKI	GCWGC	2 cut(s)	601, 919
ApoI	RAATTY	1 cut(s)	170
AsiGI	ACCGGT	2 cut(s)	279, 515
AspS9I	GGNCC	3 cut(s)	35, 277, 561
AsuC2I	CCSGG	1 cut(s)	904
AsuHPI	GGTGA	3 cut(s)	428, 525, 791
AsuII	TTCGAA	1 cut(s)	271
AvaI	CYCGRG	1 cut(s)	568
AvaII	GGWCC	2 cut(s)	277, 561
BaeGI	GKGCMC	1 cut(s)	575
BalI	TGGCCA	3 cut(s)	30, 51, 444
BamHI	GGATCC	1 cut(s)	199
BanI	GGYRCC	1 cut(s)	896
Bbv12I	GWGCWC	1 cut(s)	320
BbvI	GCAGC	1 cut(s)	613
BccI	CCATC	3 cut(s)	245, 444, 779
BcgI	CGANNNNNNTGC	4 cut(s)	143, 177, 832, 866
BciT130I	CCWGG	1 cut(s)	106
BcnI	CCSGG	1 cut(s)	904
BfaI	CTAG	2 cut(s)	237, 693
BisI	GCNGC	2 cut(s)	602, 920
BlsI	GCNGC	2 cut(s)	603, 921
Bme1390I	CCNGG	2 cut(s)	106, 904
Bme18I	GGWCC	2 cut(s)	277, 561
BmeT110I	CYCGRG	1 cut(s)	568
BmgT120I	GGNCC	3 cut(s)	35, 277, 561
BmiI	GGNNCC	4 cut(s)	201, 278, 562, 898
BmrFI	CCNGG	2 cut(s)	106, 904
BmrI	ACTGGG	1 cut(s)	766
BmsI	GCATC	2 cut(s)	29, 249
BmuI	ACTGGG	1 cut(s)	766
BpmI	CTGGAG	1 cut(s)	150
Bpu14I	TTCGAA	1 cut(s)	271
BpuEI	CTTGAG	1 cut(s)	859
BpuMI	CCSGG	1 cut(s)	904
Bsa29I	ATCGAT	1 cut(s)	153
BsaJI	CCNNGG	4 cut(s)	31, 104, 439, 892
BsaWI	WCCGGW	2 cut(s)	279, 515
Bsc4I	CCNNNNNNNGG	1 cut(s)	740
Bse118I	RCCGGY	2 cut(s)	279, 515
Bse1I	ACTGG	2 cut(s)	343, 761
BseBI	CCWGG	1 cut(s)	106
BseCI	ATCGAT	1 cut(s)	153
BseDI	CCNNGG	4 cut(s)	31, 104, 439, 892
BseLI	CCNNNNNNNGG	1 cut(s)	740
BseNI	ACTGG	2 cut(s)	343, 761
BseSI	GKGCMC	1 cut(s)	575
BseXI	GCAGC	1 cut(s)	613
BsgI	GTGCAG	1 cut(s)	540
Bsh1236I	CGCG	1 cut(s)	557
BshFI	GGCC	5 cut(s)	30, 37, 51, 444, 609
BshNI	GGYRCC	1 cut(s)	896
BshTI	ACCGGT	2 cut(s)	279, 515
BshVI	ATCGAT	1 cut(s)	153
BsiHKAI	GWGCWC	1 cut(s)	320
BsiHKCI	CYCGRG	1 cut(s)	568
BsiSI	CCGG	3 cut(s)	280, 516, 904
BslFI	GGGAC	2 cut(s)	290, 775
BslI	CCNNNNNNNGG	1 cut(s)	740
BsmFI	GGGAC	2 cut(s)	290, 775
BsnI	GGCC	5 cut(s)	30, 37, 51, 444, 609
BsoBI	CYCGRG	1 cut(s)	568
Bsp119I	TTCGAA	1 cut(s)	271
Bsp1286I	GDGCHC	2 cut(s)	320, 575
Bsp143I	GATC	3 cut(s)	150, 199, 433
Bsp19I	CCATGG	2 cut(s)	31, 439
BspACI	CCGC	1 cut(s)	557
BspANI	GGCC	5 cut(s)	30, 37, 51, 444, 609
BspDI	ATCGAT	1 cut(s)	153
BspFNI	CGCG	1 cut(s)	557
BspLI	GGNNCC	4 cut(s)	201, 278, 562, 898
BspPI	GGATC	2 cut(s)	194, 207
BspT104I	TTCGAA	1 cut(s)	271
BspT107I	GGYRCC	1 cut(s)	896
BsrFI	RCCGGY	2 cut(s)	279, 515
BsrI	ACTGG	2 cut(s)	343, 761
BssAI	RCCGGY	2 cut(s)	279, 515
BssECI	CCNNGG	4 cut(s)	31, 104, 439, 892
BssMI	GATC	3 cut(s)	150, 199, 433
BssNAI	GTATAC	1 cut(s)	550
BssT1I	CCWWGG	3 cut(s)	31, 439, 892
Bst1107I	GTATAC	1 cut(s)	550
Bst2UI	CCWGG	1 cut(s)	106
Bst4CI	ACNGT	4 cut(s)	181, 326, 402, 927
Bst6I	CTCTTC	1 cut(s)	270
BstAPI	GCANNNNNTGC	1 cut(s)	527
BstBI	TTCGAA	1 cut(s)	271
BstC8I	GCNNGC	1 cut(s)	484
BstDSI	CCRYGG	2 cut(s)	31, 439
BstFNI	CGCG	1 cut(s)	557
BstKTI	GATC	3 cut(s)	153, 202, 436
BstMBI	GATC	3 cut(s)	150, 199, 433
BstMWI	GCNNNNNNNGC	1 cut(s)	527
BstNI	CCWGG	1 cut(s)	106
BstNSI	RCATGY	2 cut(s)	626, 754
BstSCI	CCNGG	2 cut(s)	104, 902
BstSLI	GKGCMC	1 cut(s)	575
BstUI	CGCG	1 cut(s)	557
BstV1I	GCAGC	1 cut(s)	613
BstX2I	RGATCY	1 cut(s)	199
BstYI	RGATCY	1 cut(s)	199
BstZ17I	GTATAC	1 cut(s)	550
Bsu15I	ATCGAT	1 cut(s)	153
BsuRI	GGCC	5 cut(s)	30, 37, 51, 444, 609
BsuTUI	ATCGAT	1 cut(s)	153
BtgI	CCRYGG	2 cut(s)	31, 439
BtgZI	GCGATG	1 cut(s)	538
BtsI	GCAGTG	1 cut(s)	493
BtsIMutI	CAGTG	2 cut(s)	318, 493
Cac8I	GCNNGC	1 cut(s)	484
CaiI	CAGNNNCTG	2 cut(s)	527, 925
Cfr10I	RCCGGY	2 cut(s)	279, 515
Cfr13I	GGNCC	3 cut(s)	35, 277, 561
ClaI	ATCGAT	1 cut(s)	153
CseI	GACGC	1 cut(s)	76
Csp6I	GTAC	1 cut(s)	754
CspAI	ACCGGT	2 cut(s)	279, 515
CviAII	CATG	6 cut(s)	32, 440, 457, 623, 751, 798
CviQI	GTAC	1 cut(s)	754
DpnI	GATC	3 cut(s)	152, 201, 435
DpnII	GATC	3 cut(s)	150, 199, 433
EaeI	YGGCCR	3 cut(s)	28, 49, 442
Eam1104I	CTCTTC	1 cut(s)	270
EarI	CTCTTC	1 cut(s)	270
Eco130I	CCWWGG	3 cut(s)	31, 439, 892
Eco47I	GGWCC	2 cut(s)	277, 561
Eco57I	CTGAAG	1 cut(s)	318
Eco88I	CYCGRG	1 cut(s)	568
EcoO109I	RGGNCCY	1 cut(s)	561
EcoRI	GAATTC	1 cut(s)	170
EcoRII	CCWGG	1 cut(s)	104
EcoT14I	CCWWGG	3 cut(s)	31, 439, 892
ErhI	CCWWGG	3 cut(s)	31, 439, 892
FaeI	CATG	6 cut(s)	35, 443, 460, 626, 754, 801
FaqI	GGGAC	2 cut(s)	290, 775
FatI	CATG	6 cut(s)	31, 439, 456, 622, 750, 797
FauI	CCCGC	1 cut(s)	550
FauNDI	CATATG	2 cut(s)	769, 845
FblI	GTMKAC	1 cut(s)	549
Fnu4HI	GCNGC	2 cut(s)	602, 920
Fsp4HI	GCNGC	2 cut(s)	602, 920
FspBI	CTAG	2 cut(s)	237, 693
GluI	GCNGC	2 cut(s)	602, 920
GsuI	CTGGAG	1 cut(s)	150
HaeIII	GGCC	5 cut(s)	30, 37, 51, 444, 609
HapII	CCGG	3 cut(s)	280, 516, 904
HgaI	GACGC	1 cut(s)	76
Hin1II	CATG	6 cut(s)	35, 443, 460, 626, 754, 801
HinfI	GANTC	6 cut(s)	120, 158, 467, 524, 644, 710
HpaII	CCGG	3 cut(s)	280, 516, 904
HphI	GGTGA	3 cut(s)	428, 525, 791
Hpy166II	GTNNAC	1 cut(s)	550
Hpy188I	TCNGA	4 cut(s)	250, 298, 472, 715
Hpy188III	TCNNGA	5 cut(s)	167, 203, 215, 693, 707
Hpy8I	GTNNAC	1 cut(s)	550
HpyAV	CCTTC	5 cut(s)	267, 574, 699, 770, 909
HpyCH4III	ACNGT	4 cut(s)	181, 326, 402, 927
HpyCH4V	TGCA	4 cut(s)	425, 482, 521, 601
HpyF10VI	GCNNNNNNNGC	1 cut(s)	527
Hsp92II	CATG	6 cut(s)	35, 443, 460, 626, 754, 801
Kzo9I	GATC	3 cut(s)	150, 199, 433
LmnI	GCTCC	2 cut(s)	169, 453
Lsp1109I	GCAGC	1 cut(s)	613
LweI	GCATC	2 cut(s)	29, 249
MaeI	CTAG	2 cut(s)	237, 693
MalI	GATC	3 cut(s)	152, 201, 435
MboI	GATC	3 cut(s)	150, 199, 433
MboII	GAAGA	5 cut(s)	257, 260, 311, 628, 794
MflI	RGATCY	1 cut(s)	199
MhlI	GDGCHC	2 cut(s)	320, 575
MlsI	TGGCCA	3 cut(s)	30, 51, 444
MluCI	AATT	8 cut(s)	7, 135, 170, 244, 460, 509, 540, 582
MluNI	TGGCCA	3 cut(s)	30, 51, 444
MlyI	GAGTC	2 cut(s)	129, 719
MmeI	TCCRAC	3 cut(s)	96, 621, 693
MnlI	CCTC	8 cut(s)	10, 57, 185, 349, 538, 621, 655, 672
Mox20I	TGGCCA	3 cut(s)	30, 51, 444
MscI	TGGCCA	3 cut(s)	30, 51, 444
MseI	TTAA	3 cut(s)	498, 539, 587
Msp20I	TGGCCA	3 cut(s)	30, 51, 444
MspI	CCGG	3 cut(s)	280, 516, 904
MspR9I	CCNGG	2 cut(s)	106, 904
MvaI	CCWGG	1 cut(s)	106
MvnI	CGCG	1 cut(s)	557
MwoI	GCNNNNNNNGC	1 cut(s)	527
NciI	CCSGG	1 cut(s)	904
NcoI	CCATGG	2 cut(s)	31, 439
NdeI	CATATG	2 cut(s)	769, 845
NdeII	GATC	3 cut(s)	150, 199, 433
NlaIII	CATG	6 cut(s)	35, 443, 460, 626, 754, 801
NlaIV	GGNNCC	4 cut(s)	201, 278, 562, 898
NspI	RCATGY	2 cut(s)	626, 754
NspV	TTCGAA	1 cut(s)	271
PciI	ACATGT	1 cut(s)	750
PfeI	GAWTC	4 cut(s)	158, 467, 524, 644
PflMI	CCANNNNNTGG	1 cut(s)	740
PinAI	ACCGGT	2 cut(s)	279, 515
PkrI	GCNGC	2 cut(s)	603, 921
PleI	GAGTC	2 cut(s)	128, 718
PpsI	GAGTC	2 cut(s)	128, 718
PpuMI	RGGWCCY	1 cut(s)	561
PscI	ACATGT	1 cut(s)	750
Psp5II	RGGWCCY	1 cut(s)	561
Psp6I	CCWGG	1 cut(s)	104
PspGI	CCWGG	1 cut(s)	104
PspN4I	GGNNCC	4 cut(s)	201, 278, 562, 898
PspPI	GGNCC	3 cut(s)	35, 277, 561
PspPPI	RGGWCCY	1 cut(s)	561
PstNI	CAGNNNCTG	2 cut(s)	527, 925
PsuI	RGATCY	1 cut(s)	199
RsaI	GTAC	1 cut(s)	755
RsaNI	GTAC	1 cut(s)	754
SaqAI	TTAA	3 cut(s)	498, 539, 587
SatI	GCNGC	2 cut(s)	602, 920
Sau3AI	GATC	3 cut(s)	150, 199, 433
Sau96I	GGNCC	3 cut(s)	35, 277, 561
SchI	GAGTC	2 cut(s)	129, 719
ScrFI	CCNGG	2 cut(s)	106, 904
SduI	GDGCHC	2 cut(s)	320, 575
SfaNI	GCATC	2 cut(s)	29, 249
SfuI	TTCGAA	1 cut(s)	271
SinI	GGWCC	2 cut(s)	277, 561
SmlI	CTYRAG	1 cut(s)	838
SmoI	CTYRAG	1 cut(s)	838
Sse9I	AATT	8 cut(s)	7, 135, 170, 244, 460, 509, 540, 582
SsiI	CCGC	1 cut(s)	557
SspMI	CTAG	2 cut(s)	237, 693
StyD4I	CCNGG	2 cut(s)	104, 902
StyI	CCWWGG	3 cut(s)	31, 439, 892
TaaI	ACNGT	4 cut(s)	181, 326, 402, 927
TaqI	TCGA	3 cut(s)	153, 271, 363
TasI	AATT	8 cut(s)	7, 135, 170, 244, 460, 509, 540, 582
TatI	WGTACW	1 cut(s)	753
TfiI	GAWTC	4 cut(s)	158, 467, 524, 644
Tru1I	TTAA	3 cut(s)	498, 539, 587
Tru9I	TTAA	3 cut(s)	498, 539, 587
TscAI	CASTG	2 cut(s)	325, 493
TseI	GCWGC	2 cut(s)	601, 919
TspDTI	ATGAA	2 cut(s)	473, 786
TspRI	CASTG	2 cut(s)	325, 493
Van91I	CCANNNNNTGG	1 cut(s)	740
VpaK11BI	GGWCC	2 cut(s)	277, 561
XapI	RAATTY	1 cut(s)	170
XbaI	TCTAGA	1 cut(s)	692
XceI	RCATGY	2 cut(s)	626, 754
XmiI	GTMKAC	1 cut(s)	549
XspI	CTAG	2 cut(s)	237, 693

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.