Rorug06G0011000

At1g01500-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0001242
Physical Location & Seq
Forward (+)
1537083 .. 1538120
1038 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0011000.1

Sequence Viewer

Length: 684 bp
ATGGCGATGGAATGGTGTCCTCAAGCTGCCTTGCAAGCTTATCTCCACACTCTTCACCTGTGTAAAGATCAAAACAATCAAGATAACAGCAGCACTTTTGGAAGCTCAAGTTGCATCATAGAGCCAAAATGCATGGAGTTTGTATCCGCTTTGGCAGCTGGGAAGAAAGCAAGGTTAATGGTACAGATCACATCCGAAGGCGTAACGCCACTGACTGTTTCACTGGCTGTGGCTGCAAAGCAGACCGGAGGCCGCCTCATCGTCTGCATTACTCAGCCTCTTAGTCATCATCACGAGTATGTGGAGAAAATGAGCAGAACCCTATTTCTGGAAAATGGTCTTGATGGTGTTGTTGAATTTGTTTATGGTATTGATCCTTGTCTGGTGGTGAAGCAGTTCAAGAATATTGATTTTGCGGTCATCGACTGCAAGATTGAAGAGCACTTAAAGGTGTTGAAGATTATGAATCTTAATCCAAATGGTAGCATGGTGGTACTGAATAATCTTCATCACTCTGAAAGGGGTGGTGGAGGTGCGTTTCCTGATCAGGTTTTTAAGCAAAAGAAAGGGTTTGAATATGTGACACTACCTATTGGAGAAGGGATGGAGTTGACAAGATTCAGATTAAATGGCAAGTACCAGAGCAAGAGATGCAAGAGGTTTCATGTAACATATGAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

227

Amino Acids

25.39

Weight (kDa)

8.09

Isoelectric Point (pI)

34.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1442 PF07279 1 - 217 2.9e-22 Protein of unknown function (DUF1442)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 147, 253, 416
AclWI GGATC 1 cut(s) 368
AcsI RAATTY 1 cut(s) 356
AfaI GTAC 3 cut(s) 183, 495, 638
AfiI CCNNNNNNNGG 1 cut(s) 328
AgsI TTSAA 5 cut(s) 356, 400, 437, 457, 575
AluBI AGCT 4 cut(s) 26, 38, 105, 158
AluI AGCT 4 cut(s) 26, 38, 105, 158
Alw21I GWGCWC 1 cut(s) 444
AlwI GGATC 1 cut(s) 368
AoxI GGCC 1 cut(s) 250
ApeKI GCWGC 4 cut(s) 26, 90, 155, 233
ApoI RAATTY 1 cut(s) 356
Asp700I GAANNNNTTC 1 cut(s) 395
AsuHPI GGTGA 2 cut(s) 47, 400
BauI CACGAG 1 cut(s) 293
Bbv12I GWGCWC 1 cut(s) 444
BbvI GCAGC 4 cut(s) 13, 102, 167, 220
BccI CCATC 2 cut(s) 338, 598
BciVI GTATCC 1 cut(s) 154
BclI TGATCA 1 cut(s) 544
BfuI GTATCC 1 cut(s) 154
BisI GCNGC 5 cut(s) 27, 91, 156, 234, 253
BlsI GCNGC 5 cut(s) 28, 92, 157, 235, 254
BmsI GCATC 2 cut(s) 123, 641
BplI GAGNNNNNCTC 2 cut(s) 240, 272
BpuEI CTTGAG 2 cut(s) 6, 91
BsaWI WCCGGW 1 cut(s) 245
Bsc4I CCNNNNNNNGG 1 cut(s) 328
Bse1I ACTGG 1 cut(s) 228
BseGI GGATG 2 cut(s) 191, 609
BseLI CCNNNNNNNGG 1 cut(s) 328
BseMII CTCAG 1 cut(s) 287
BseNI ACTGG 1 cut(s) 228
BseXI GCAGC 4 cut(s) 13, 102, 167, 220
BseYI CCCAGC 1 cut(s) 158
BshFI GGCC 1 cut(s) 252
BsiHKAI GWGCWC 1 cut(s) 444
BsiSI CCGG 1 cut(s) 246
BslI CCNNNNNNNGG 1 cut(s) 328
BsnI GGCC 1 cut(s) 252
Bsp1286I GDGCHC 1 cut(s) 444
Bsp143I GATC 4 cut(s) 67, 186, 373, 544
BspACI CCGC 3 cut(s) 147, 253, 416
BspANI GGCC 1 cut(s) 252
BspCNI CTCAG 1 cut(s) 286
BspPI GGATC 1 cut(s) 368
BspQI GCTCTTC 1 cut(s) 432
BsrI ACTGG 1 cut(s) 228
BssMI GATC 4 cut(s) 67, 186, 373, 544
BssSI CACGAG 1 cut(s) 293
Bst2BI CACGAG 1 cut(s) 293
Bst4CI ACNGT 1 cut(s) 217
Bst6I CTCTTC 2 cut(s) 57, 432
BstAPI GCANNNNNTGC 1 cut(s) 651
BstC8I GCNNGC 1 cut(s) 36
BstDEI CTNAG 2 cut(s) 273, 281
BstF5I GGATG 2 cut(s) 191, 609
BstKTI GATC 4 cut(s) 70, 189, 376, 547
BstMBI GATC 4 cut(s) 67, 186, 373, 544
BstMWI GCNNNNNNNGC 5 cut(s) 35, 111, 155, 233, 651
BstV1I GCAGC 4 cut(s) 13, 102, 167, 220
BsuI GTATCC 1 cut(s) 154
BsuRI GGCC 1 cut(s) 252
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 2 cut(s) 191, 609
BtsIMutI CAGTG 2 cut(s) 209, 221
Cac8I GCNNGC 1 cut(s) 36
Csp6I GTAC 3 cut(s) 182, 494, 637
CviAII CATG 3 cut(s) 133, 487, 665
CviJI RGCY 9 cut(s) 26, 38, 105, 124, 158, 227, 233, 252, 277
CviKI_1 RGCY 9 cut(s) 26, 38, 105, 124, 158, 227, 233, 252, 277
CviQI GTAC 3 cut(s) 182, 494, 637
DdeI CTNAG 2 cut(s) 273, 281
DpnI GATC 4 cut(s) 69, 188, 375, 546
DpnII GATC 4 cut(s) 67, 186, 373, 544
Eam1104I CTCTTC 2 cut(s) 57, 432
EarI CTCTTC 2 cut(s) 57, 432
EcoT22I ATGCAT 1 cut(s) 134
FaeI CATG 3 cut(s) 136, 490, 668
FatI CATG 3 cut(s) 132, 486, 664
FauNDI CATATG 1 cut(s) 673
FbaI TGATCA 1 cut(s) 544
Fnu4HI GCNGC 5 cut(s) 27, 91, 156, 234, 253
FokI GGATG 2 cut(s) 178, 616
Fsp4HI GCNGC 5 cut(s) 27, 91, 156, 234, 253
GluI GCNGC 5 cut(s) 27, 91, 156, 234, 253
GsaI CCCAGC 1 cut(s) 162
HaeIII GGCC 1 cut(s) 252
HapII CCGG 1 cut(s) 246
Hin1II CATG 3 cut(s) 136, 490, 668
HincII GTYRAC 1 cut(s) 612
HindII GTYRAC 1 cut(s) 612
HindIII AAGCTT 1 cut(s) 36
HinfI GANTC 2 cut(s) 466, 618
HpaII CCGG 1 cut(s) 246
HphI GGTGA 2 cut(s) 47, 400
Hpy166II GTNNAC 1 cut(s) 612
Hpy188I TCNGA 3 cut(s) 196, 517, 623
Hpy188III TCNNGA 6 cut(s) 80, 293, 329, 341, 400, 542
Hpy8I GTNNAC 1 cut(s) 612
HpyAV CCTTC 2 cut(s) 191, 593
HpyCH4III ACNGT 1 cut(s) 217
HpyCH4V TGCA 7 cut(s) 34, 114, 132, 236, 267, 429, 654
HpyF10VI GCNNNNNNNGC 5 cut(s) 35, 111, 155, 233, 651
HpyF3I CTNAG 2 cut(s) 273, 281
Hsp92II CATG 3 cut(s) 136, 490, 668
Ksp22I TGATCA 1 cut(s) 544
Kzo9I GATC 4 cut(s) 67, 186, 373, 544
LguI GCTCTTC 1 cut(s) 432
LpnPI CCDG 9 cut(s) 71, 144, 209, 259, 314, 368, 533, 555, 653
Lsp1109I GCAGC 4 cut(s) 13, 102, 167, 220
LweI GCATC 2 cut(s) 123, 641
MaeIII GTNAC 3 cut(s) 202, 580, 667
MalI GATC 4 cut(s) 69, 188, 375, 546
MboI GATC 4 cut(s) 67, 186, 373, 544
MboII GAAGA 5 cut(s) 44, 175, 449, 469, 497
MhlI GDGCHC 1 cut(s) 444
MluCI AATT 1 cut(s) 356
MnlI CCTC 6 cut(s) 30, 242, 266, 288, 524, 651
Mph1103I ATGCAT 1 cut(s) 134
MroXI GAANNNNTTC 1 cut(s) 395
MseI TTAA 5 cut(s) 176, 446, 471, 555, 626
MslI CAYNNNNRTG 1 cut(s) 297
MspA1I CMGCKG 1 cut(s) 158
MspI CCGG 1 cut(s) 246
MwoI GCNNNNNNNGC 5 cut(s) 35, 111, 155, 233, 651
NdeI CATATG 1 cut(s) 673
NdeII GATC 4 cut(s) 67, 186, 373, 544
NlaIII CATG 3 cut(s) 136, 490, 668
NmuCI GTSAC 1 cut(s) 580
NsiI ATGCAT 1 cut(s) 134
PciSI GCTCTTC 1 cut(s) 432
PdmI GAANNNNTTC 1 cut(s) 395
PfeI GAWTC 2 cut(s) 466, 618
PkrI GCNGC 5 cut(s) 28, 92, 157, 235, 254
PspFI CCCAGC 1 cut(s) 158
PvuII CAGCTG 1 cut(s) 158
RsaI GTAC 3 cut(s) 183, 495, 638
RsaNI GTAC 3 cut(s) 182, 494, 637
RseI CAYNNNNRTG 1 cut(s) 297
SapI GCTCTTC 1 cut(s) 432
SaqAI TTAA 5 cut(s) 176, 446, 471, 555, 626
SatI GCNGC 5 cut(s) 27, 91, 156, 234, 253
Sau3AI GATC 4 cut(s) 67, 186, 373, 544
SduI GDGCHC 1 cut(s) 444
SfaNI GCATC 2 cut(s) 123, 641
SmiMI CAYNNNNRTG 1 cut(s) 297
SmlI CTYRAG 2 cut(s) 21, 106
SmoI CTYRAG 2 cut(s) 21, 106
Sse9I AATT 1 cut(s) 356
SsiI CCGC 3 cut(s) 147, 253, 416
SspI AATATT 1 cut(s) 406
TaaI ACNGT 1 cut(s) 217
TaqI TCGA 1 cut(s) 423
TasI AATT 1 cut(s) 356
TauI GCSGC 1 cut(s) 255
TfiI GAWTC 2 cut(s) 466, 618
Tru1I TTAA 5 cut(s) 176, 446, 471, 555, 626
Tru9I TTAA 5 cut(s) 176, 446, 471, 555, 626
TscAI CASTG 2 cut(s) 216, 228
TseFI GTSAC 1 cut(s) 580
TseI GCWGC 4 cut(s) 26, 90, 155, 233
Tsp45I GTSAC 1 cut(s) 580
TspDTI ATGAA 3 cut(s) 479, 497, 653
TspRI CASTG 2 cut(s) 216, 228
XapI RAATTY 1 cut(s) 356
XmnI GAANNNNTTC 1 cut(s) 395
Zsp2I ATGCAT 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.