Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001242

Physical Location & Seq

Genomic Coordinates Forward (+)

8466092 .. 8469709

Gene Structure 3618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00167270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGATGTTCCTTATGAAACAACACCAAGCAATGGTGAAGTGGCCAATCACGGCCTTCAGATTATTAGATACTCTCCTTACCAGCACAACAGTAAATTATCATCACCCTGGTTTGATCTGAGAGTCTTCTATGTAAGGATCAGCAACTTTATGGTGGATGAATCTACCCCCAAGTTTCTGACCCTCATCCATATTCCTCTAAGCCCAGATACCCTTTTGGAAGTAAACGGTGCAAAAACTAGCATGTACTCTGATGGTGTATCTTCACATCTTAGAAGGGATCGGGTGGATAAGAAATCCGAAGAAGTCACATTTGTGAATACAGACAGCATAAGGTTCACAGGGAGTGTGAAATTTGAGGTGTTTGATAAAGATGATCTTATTCTCTCCGGGGTGTTAGATATGTCTAATAGCAATGGTTTCGTTGGGGAATCAAAGAACAATGCCAAGCGATGGAGCATAAATTGTGAATCAGAGATCACTGCTGGCACTGGATTTTTCAAGGGAAAACAACTTAATGGCACTGAATCACCTGCACCGAGCATTGAGGTTTACGTTGCTGGCTCCTTCTCTGGAACACCAATCATCTTAACCAAGACCCTGCAGATTAGTTTCCGAAAGAAGCACAATAGGAAGAGCACTTTGGATGCAATTCCGGAGTATGAAGCAACTGAATTGCAGAAAGATGAGTCTCCTGAACTTAATATGGAGGTGGCAGAATATAGAAACTACAAACCAGAAAATGAGGAAGAGTATGGGATGTACTGGAGGACAGAATACATGGATGGTGAAGATGGTGAGCTCTCATGGTTCAATGCTGGTGTGAGAGTTGGCGTTGGAATTGGACTTGGCATTTGTCTTGGAGTTGGGATAGGGGTCGGTTTGCTGGTTCGTACATATCAAACAACCACTCGGACTTTCAAGAGGCGACTGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

312

Amino Acids

35.1

Weight (kDa)

5.43

Isoelectric Point (pI)

45.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19400 AT1G19400 AT1G19400 AT1G19400 AT1G75180 AT1G75180 AT1G75180 AT1G75180
fragaria_vesca	FvH4_2g08760 FvH4_2g39840 FvH4_2g39840 FvH4_2g39840
malus_domestica	MD08G1032000.v1.1 MD10G1076500.v1.1 MD15G1028000.v1.1
prunus_persica	Prupe.1G379700_v2.0.a1 Prupe.1G379700_v2.0.a1 Prupe.1G379700_v2.0.a1 Prupe.1G379700_v2.0.a1 Prupe.8G097300_v2.0.a1 Prupe.8G097300_v2.0.a1 Prupe.8G097300_v2.0.a1 Prupe.8G097300_v2.0.a1
pyrus_communis	pycom08g02530 pycom15g02400
rosa_chinensis	RchiOBHm_Chr6g0264221 RchiOBHm_Chr6g0301001
rosa_laevigata	RLG00000011286 RLG00000014279
rosa_multiflora	Rmu_co8302127.1_g000001 Rmu_sc0003168.1_g000005 Rmu_sc0005114.1_g000014
rosa_roxburghii	Rroxscaffold_176G00431620 Rroxscaffold_7G00167270 Rroxscaffold_7G00203390
rosa_rugosa	Rorug06G0010200 Rorug06G0010300 Rorug06G0010400 Rorug06G0010500.1 Rorug06G0010600 Rorug06G0010600 Rorug06G0010700 Rorug06G0010800 Rorug06G0010900 Rorug06G0011000 Rorug06G0299900
rosa_samantha	Rh6AG130300 Rh6AG413800 Rh6BG127600 Rh6BG420700 Rh6CG126200 Rh6CG428300 Rh6DG112900 Rh6DG413700
rosa_wichuraiana	Rw6G011350 Rw6G011410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	541
Acc36I	ACCTGC	1 cut(s)	541
AccB7I	CCANNNNNTGG	2 cut(s)	32, 453
AccIII	TCCGGA	1 cut(s)	655
AclWI	GGATC	2 cut(s)	146, 288
AcoI	YGGCCR	1 cut(s)	42
AcsI	RAATTY	1 cut(s)	353
AcuI	CTGAAG	1 cut(s)	41
AfaI	GTAC	3 cut(s)	248, 764, 895
AfiI	CCNNNNNNNGG	2 cut(s)	32, 453
AgsI	TTSAA	3 cut(s)	502, 814, 922
AjnI	CCWGG	1 cut(s)	107
AjuI	GAANNNNNNNTTGG	2 cut(s)	626, 658
AleI	CACNNNNGTG	1 cut(s)	314
AluBI	AGCT	1 cut(s)	802
AluI	AGCT	1 cut(s)	802
Alw21I	GWGCWC	2 cut(s)	641, 804
Alw26I	GTCTC	1 cut(s)	696
AlwI	GGATC	2 cut(s)	146, 288
Aor13HI	TCCGGA	1 cut(s)	655
AoxI	GGCC	2 cut(s)	42, 52
ApoI	RAATTY	1 cut(s)	353
ArsI	GACNNNNNNTTYG	2 cut(s)	837, 869
AsuC2I	CCSGG	1 cut(s)	391
AsuHPI	GGTGA	5 cut(s)	47, 96, 522, 800, 809
BalI	TGGCCA	1 cut(s)	44
BanII	GRGCYC	1 cut(s)	804
BbsI	GAAGAC	1 cut(s)	118
Bbv12I	GWGCWC	2 cut(s)	641, 804
BccI	CCATC	4 cut(s)	248, 447, 779, 788
BceAI	ACGGC	1 cut(s)	67
BcgI	CGANNNNNNTGC	2 cut(s)	403, 437
BciT130I	CCWGG	1 cut(s)	109
BcnI	CCSGG	1 cut(s)	391
BcoDI	GTCTC	1 cut(s)	696
BfaI	CTAG	1 cut(s)	240
BfmI	CTRYAG	1 cut(s)	602
BfuAI	ACCTGC	1 cut(s)	541
Bme1390I	CCNGG	2 cut(s)	109, 391
BmiI	GGNNCC	1 cut(s)	565
BmrFI	CCNGG	2 cut(s)	109, 391
BmsI	GCATC	1 cut(s)	637
BpiI	GAAGAC	1 cut(s)	118
BpmI	CTGGAG	1 cut(s)	787
BpuMI	CCSGG	1 cut(s)	391
BsaJI	CCNNGG	2 cut(s)	107, 390
BsaWI	WCCGGW	1 cut(s)	655
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 453
Bse1I	ACTGG	3 cut(s)	496, 770, 936
Bse3DI	GCAATG	2 cut(s)	37, 421
BseAI	TCCGGA	1 cut(s)	655
BseBI	CCWGG	1 cut(s)	109
BseDI	CCNNGG	2 cut(s)	107, 390
BseGI	GGATG	6 cut(s)	10, 163, 186, 652, 765, 790
BseLI	CCNNNNNNNGG	2 cut(s)	32, 453
BseMI	GCAATG	2 cut(s)	37, 421
BseMII	CTCAG	1 cut(s)	110
BseNI	ACTGG	3 cut(s)	496, 770, 936
BsgI	GTGCAG	1 cut(s)	519
BshFI	GGCC	2 cut(s)	44, 54
BsiHKAI	GWGCWC	2 cut(s)	641, 804
BsiSI	CCGG	2 cut(s)	390, 656
BslI	CCNNNNNNNGG	2 cut(s)	32, 453
BsmAI	GTCTC	1 cut(s)	696
BsnI	GGCC	2 cut(s)	44, 54
Bsp1286I	GDGCHC	2 cut(s)	641, 804
Bsp13I	TCCGGA	1 cut(s)	655
Bsp143I	GATC	5 cut(s)	115, 138, 280, 376, 477
BspANI	GGCC	2 cut(s)	44, 54
BspCNI	CTCAG	1 cut(s)	111
BspEI	TCCGGA	1 cut(s)	655
BspLI	GGNNCC	1 cut(s)	565
BspMAI	CTGCAG	1 cut(s)	606
BspMI	ACCTGC	1 cut(s)	541
BspPI	GGATC	2 cut(s)	146, 288
BspQI	GCTCTTC	1 cut(s)	629
BsrDI	GCAATG	2 cut(s)	37, 421
BsrI	ACTGG	3 cut(s)	496, 770, 936
BssECI	CCNNGG	2 cut(s)	107, 390
BssMI	GATC	5 cut(s)	115, 138, 280, 376, 477
Bst2UI	CCWGG	1 cut(s)	109
Bst4CI	ACNGT	2 cut(s)	92, 230
Bst6I	CTCTTC	2 cut(s)	629, 744
BstC8I	GCNNGC	2 cut(s)	487, 562
BstDEI	CTNAG	3 cut(s)	119, 200, 272
BstF5I	GGATG	6 cut(s)	10, 163, 186, 652, 765, 790
BstKTI	GATC	5 cut(s)	118, 141, 283, 379, 480
BstMAI	GTCTC	1 cut(s)	696
BstMBI	GATC	5 cut(s)	115, 138, 280, 376, 477
BstNI	CCWGG	1 cut(s)	109
BstNSI	RCATGY	1 cut(s)	247
BstSCI	CCNGG	2 cut(s)	107, 389
BstSFI	CTRYAG	1 cut(s)	602
BstV2I	GAAGAC	1 cut(s)	118
BsuRI	GGCC	2 cut(s)	44, 54
BtgZI	GCGATG	1 cut(s)	466
BtsCI	GGATG	6 cut(s)	10, 163, 186, 652, 765, 790
BtsI	GCAGTG	1 cut(s)	480
BtsIMutI	CAGTG	3 cut(s)	480, 489, 522
BveI	ACCTGC	1 cut(s)	541
Cac8I	GCNNGC	2 cut(s)	487, 562
Csp6I	GTAC	3 cut(s)	247, 763, 894
CviAII	CATG	3 cut(s)	244, 781, 807
CviJI	RGCY	5 cut(s)	44, 54, 204, 564, 802
CviKI_1	RGCY	5 cut(s)	44, 54, 204, 564, 802
CviQI	GTAC	3 cut(s)	247, 763, 894
DdeI	CTNAG	3 cut(s)	119, 200, 272
DpnI	GATC	5 cut(s)	117, 140, 282, 378, 479
DpnII	GATC	5 cut(s)	115, 138, 280, 376, 477
EaeI	YGGCCR	1 cut(s)	42
Eam1104I	CTCTTC	2 cut(s)	629, 744
EarI	CTCTTC	2 cut(s)	629, 744
Ecl136II	GAGCTC	1 cut(s)	802
Eco24I	GRGCYC	1 cut(s)	804
Eco53kI	GAGCTC	1 cut(s)	802
Eco57I	CTGAAG	1 cut(s)	41
EcoICRI	GAGCTC	1 cut(s)	802
EcoRII	CCWGG	1 cut(s)	107
EcoT38I	GRGCYC	1 cut(s)	804
FaeI	CATG	3 cut(s)	247, 784, 810
FalI	AAGNNNNNCTT	2 cut(s)	363, 395
FatI	CATG	3 cut(s)	243, 780, 806
FokI	GGATG	6 cut(s)	17, 170, 173, 659, 772, 797
FriOI	GRGCYC	1 cut(s)	804
FspBI	CTAG	1 cut(s)	240
GsuI	CTGGAG	1 cut(s)	787
HaeIII	GGCC	2 cut(s)	44, 54
HapII	CCGG	2 cut(s)	390, 656
Hin1II	CATG	3 cut(s)	247, 784, 810
HinfI	GANTC	6 cut(s)	123, 161, 431, 470, 527, 689
HpaII	CCGG	2 cut(s)	390, 656
HphI	GGTGA	5 cut(s)	47, 96, 522, 800, 809
Hpy166II	GTNNAC	3 cut(s)	226, 339, 553
Hpy188I	TCNGA	8 cut(s)	60, 120, 180, 253, 301, 475, 617, 915
Hpy188III	TCNNGA	4 cut(s)	573, 656, 695, 922
Hpy8I	GTNNAC	3 cut(s)	226, 339, 553
HpyAV	CCTTC	3 cut(s)	65, 270, 577
HpyCH4III	ACNGT	2 cut(s)	92, 230
HpyCH4IV	ACGT	1 cut(s)	555
HpyCH4V	TGCA	5 cut(s)	233, 536, 604, 650, 679
HpyF3I	CTNAG	3 cut(s)	119, 200, 272
HpySE526I	ACGT	1 cut(s)	555
Hsp92II	CATG	3 cut(s)	247, 784, 810
Kpn2I	TCCGGA	1 cut(s)	655
Kzo9I	GATC	5 cut(s)	115, 138, 280, 376, 477
LguI	GCTCTTC	1 cut(s)	629
LmnI	GCTCC	2 cut(s)	456, 569
LweI	GCATC	1 cut(s)	637
MaeI	CTAG	1 cut(s)	240
MaeII	ACGT	1 cut(s)	555
MaeIII	GTNAC	1 cut(s)	307
MalI	GATC	5 cut(s)	117, 140, 282, 378, 479
MboI	GATC	5 cut(s)	115, 138, 280, 376, 477
MboII	GAAGA	6 cut(s)	118, 255, 314, 646, 761, 803
MhlI	GDGCHC	2 cut(s)	641, 804
MlsI	TGGCCA	1 cut(s)	44
MluCI	AATT	6 cut(s)	95, 353, 463, 651, 674, 840
MluNI	TGGCCA	1 cut(s)	44
MlyI	GAGTC	2 cut(s)	132, 698
MmeI	TCCRAC	1 cut(s)	817
MnlI	CCTC	8 cut(s)	194, 207, 352, 541, 703, 739, 762, 918
Mox20I	TGGCCA	1 cut(s)	44
MroI	TCCGGA	1 cut(s)	655
MscI	TGGCCA	1 cut(s)	44
MseI	TTAA	3 cut(s)	516, 590, 702
MslI	CAYNNNNRTG	1 cut(s)	314
Msp20I	TGGCCA	1 cut(s)	44
MspI	CCGG	2 cut(s)	390, 656
MspR9I	CCNGG	2 cut(s)	109, 391
MvaI	CCWGG	1 cut(s)	109
NciI	CCSGG	1 cut(s)	391
NdeII	GATC	5 cut(s)	115, 138, 280, 376, 477
NlaIII	CATG	3 cut(s)	247, 784, 810
NlaIV	GGNNCC	1 cut(s)	565
NmuCI	GTSAC	1 cut(s)	307
NspI	RCATGY	1 cut(s)	247
OliI	CACNNNNGTG	1 cut(s)	314
PaqCI	CACCTGC	1 cut(s)	541
PciSI	GCTCTTC	1 cut(s)	629
PfeI	GAWTC	4 cut(s)	161, 431, 470, 527
PflMI	CCANNNNNTGG	2 cut(s)	32, 453
PleI	GAGTC	2 cut(s)	131, 697
PpsI	GAGTC	2 cut(s)	131, 697
Psp124BI	GAGCTC	1 cut(s)	804
Psp6I	CCWGG	1 cut(s)	107
PspGI	CCWGG	1 cut(s)	107
PspN4I	GGNNCC	1 cut(s)	565
PstI	CTGCAG	1 cut(s)	606
RsaI	GTAC	3 cut(s)	248, 764, 895
RsaNI	GTAC	3 cut(s)	247, 763, 894
RseI	CAYNNNNRTG	1 cut(s)	314
SacI	GAGCTC	1 cut(s)	804
SapI	GCTCTTC	1 cut(s)	629
SaqAI	TTAA	3 cut(s)	516, 590, 702
Sau3AI	GATC	5 cut(s)	115, 138, 280, 376, 477
SchI	GAGTC	2 cut(s)	132, 698
ScrFI	CCNGG	2 cut(s)	109, 391
SduI	GDGCHC	2 cut(s)	641, 804
SetI	ASST	7 cut(s)	338, 363, 535, 552, 558, 714, 804
SfaNI	GCATC	1 cut(s)	637
SfcI	CTRYAG	1 cut(s)	602
SmiMI	CAYNNNNRTG	1 cut(s)	314
Sse9I	AATT	6 cut(s)	95, 353, 463, 651, 674, 840
SspMI	CTAG	1 cut(s)	240
SstI	GAGCTC	1 cut(s)	804
StyD4I	CCNGG	2 cut(s)	107, 389
TaaI	ACNGT	2 cut(s)	92, 230
TaiI	ACGT	1 cut(s)	558
TasI	AATT	6 cut(s)	95, 353, 463, 651, 674, 840
TatI	WGTACW	2 cut(s)	246, 762
TfiI	GAWTC	4 cut(s)	161, 431, 470, 527
Tru1I	TTAA	3 cut(s)	516, 590, 702
Tru9I	TTAA	3 cut(s)	516, 590, 702
TscAI	CASTG	3 cut(s)	487, 496, 529
TseFI	GTSAC	1 cut(s)	307
Tsp45I	GTSAC	1 cut(s)	307
TspDTI	ATGAA	3 cut(s)	30, 174, 678
TspRI	CASTG	3 cut(s)	487, 496, 529
Van91I	CCANNNNNTGG	2 cut(s)	32, 453
XapI	RAATTY	1 cut(s)	353
XceI	RCATGY	1 cut(s)	247
XspI	CTAG	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.