Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001242

Physical Location & Seq

Genomic Coordinates Reverse (-)

28215836 .. 28218801

Gene Structure 2966 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G75180.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGTGGAGCCTTATGAGACACGTAACAACGGTGAAGCATCCCAGATGATCAGATATCAGAGTTATAACCATCACAATTCCAGACTACCATCTTCATTATCATCGCCATTGCTTGATTTGAGAGTGTTCTATGTCAGAATCAGTAATTTCAAGGTGGATCATTCGACACCTGAGGTTCTCACCATTACTCATATTCCTTTGGATCCAGATTCACTTCTGGAGATTAATGGTGTTAGAATGAGCATGTACTCTGAAGGAGTTTCTTCTCAGCTTAGGCGTGATCGTGTTGATAAGAAATCTGAAGTTGCTACTTTTATCAGCACGGATAATATCAGGTTATCTGGTAGTGTGAAGTTTGAGGTTTATGATAAAGATGAGCTGGTTTTGTCTGGAACGCTTGAGATGTCTGGTAGTAATGGTTTCACTGGTGAATCTAAGCATAGCGTGAAGCGGTGGAACATGAATTGTGAAGCTGAGATCACTGCAGAGTCTGGTTTCTTGAAGGAGAAACATATTGGTGGTTCGGAGTTATCTTCTCCATTGCCAACTATTGAAGTCTATGTCACTGGCTGCTTTTCTGGAACTCCTATCATCCTAACGAAGACTCTACAGCTTGGTTTCAGAAAGAAGCACGGTAGAGTGACTGCATTAGATTCGATTCCCGAGTATGAAACTGATGAGCCTCATAAAGGAAACTCATCTGAGCTTGATTATCAGGTTACTGAATATGGAAGTTATAAACAAGAATATGAAGGAGAACACAGCGACATGTACTGGAATAGAGAGTACGCAGATGGTGAAGATGGTGAGATGTCGTGGTTCAACGCTGGTGTGAGGGTTGGTGTGGGAATTGGTCTTGGTGTCTGTGTAGGTCTTGGCATTGGGGTTGGCCTTCTGGTGCGTACCTATCAATCGACCACCAGAAACTTCAGAAGGAGGATTATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

315

Amino Acids

35.38

Weight (kDa)

5.56

Isoelectric Point (pI)

47.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19400 AT1G19400 AT1G19400 AT1G19400 AT1G75180 AT1G75180 AT1G75180 AT1G75180
fragaria_vesca	FvH4_2g08760 FvH4_2g39840 FvH4_2g39840 FvH4_2g39840
malus_domestica	MD08G1032000.v1.1 MD10G1076500.v1.1 MD15G1028000.v1.1
prunus_persica	Prupe.1G379700_v2.0.a1 Prupe.1G379700_v2.0.a1 Prupe.1G379700_v2.0.a1 Prupe.1G379700_v2.0.a1 Prupe.8G097300_v2.0.a1 Prupe.8G097300_v2.0.a1 Prupe.8G097300_v2.0.a1 Prupe.8G097300_v2.0.a1
pyrus_communis	pycom08g02530 pycom15g02400
rosa_chinensis	RchiOBHm_Chr6g0264221 RchiOBHm_Chr6g0301001
rosa_laevigata	RLG00000011286 RLG00000014279
rosa_multiflora	Rmu_co8302127.1_g000001 Rmu_sc0003168.1_g000005 Rmu_sc0005114.1_g000014
rosa_roxburghii	Rroxscaffold_176G00431620 Rroxscaffold_7G00167270 Rroxscaffold_7G00203390
rosa_rugosa	Rorug06G0010200 Rorug06G0010300 Rorug06G0010400 Rorug06G0010500.1 Rorug06G0010600 Rorug06G0010600 Rorug06G0010700 Rorug06G0010800 Rorug06G0010900 Rorug06G0011000 Rorug06G0299900
rosa_samantha	Rh6AG130300 Rh6AG413800 Rh6BG127600 Rh6BG420700 Rh6CG126200 Rh6CG428300 Rh6DG112900 Rh6DG413700
rosa_wichuraiana	Rw6G011350 Rw6G011410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	66, 738
AciI	CCGC	1 cut(s)	451
AclWI	GGATC	3 cut(s)	165, 197, 210
AcuI	CTGAAG	3 cut(s)	273, 321, 913
AfaI	GTAC	4 cut(s)	248, 773, 788, 904
AfiI	CCNNNNNNNGG	1 cut(s)	689
AflIII	ACRYGT	2 cut(s)	20, 768
AgsI	TTSAA	4 cut(s)	151, 502, 554, 823
AluBI	AGCT	5 cut(s)	271, 379, 473, 613, 706
AluI	AGCT	5 cut(s)	271, 379, 473, 613, 706
Alw26I	GTCTC	1 cut(s)	11
AlwI	GGATC	3 cut(s)	165, 197, 210
AlwNI	CAGNNNCTG	1 cut(s)	491
Ama87I	CYCGRG	1 cut(s)	662
AoxI	GGCC	1 cut(s)	889
ApeKI	GCWGC	1 cut(s)	570
AseI	ATTAAT	1 cut(s)	225
AsuHPI	GGTGA	5 cut(s)	44, 172, 440, 809, 818
AvaI	CYCGRG	1 cut(s)	662
AxyI	CCTNAGG	1 cut(s)	171
BamHI	GGATCC	1 cut(s)	202
BbsI	GAAGAC	1 cut(s)	608
BbvI	GCAGC	1 cut(s)	557
BccI	CCATC	4 cut(s)	78, 97, 788, 797
BcgI	CGANNNNNNTGC	2 cut(s)	636, 670
BclI	TGATCA	1 cut(s)	48
BcoDI	GTCTC	1 cut(s)	11
BfaI	CTAG	1 cut(s)	946
BfmI	CTRYAG	2 cut(s)	483, 608
BisI	GCNGC	1 cut(s)	571
BlsI	GCNGC	1 cut(s)	572
BmeT110I	CYCGRG	1 cut(s)	662
BmiI	GGNNCC	2 cut(s)	9, 204
BmsI	GCATC	1 cut(s)	47
BpiI	GAAGAC	1 cut(s)	608
BpmI	CTGGAG	1 cut(s)	239
Bpu10I	CCTNAGC	1 cut(s)	272
BpuEI	CTTGAG	1 cut(s)	419
BsaAI	YACGTR	1 cut(s)	23
Bsc4I	CCNNNNNNNGG	1 cut(s)	689
Bse1I	ACTGG	3 cut(s)	430, 571, 779
Bse21I	CCTNAGG	1 cut(s)	171
Bse3DI	GCAATG	2 cut(s)	107, 539
BseGI	GGATG	2 cut(s)	38, 591
BseLI	CCNNNNNNNGG	1 cut(s)	689
BseMI	GCAATG	2 cut(s)	107, 539
BseMII	CTCAG	4 cut(s)	162, 281, 465, 693
BseNI	ACTGG	3 cut(s)	430, 571, 779
BseXI	GCAGC	1 cut(s)	557
BshFI	GGCC	1 cut(s)	891
BsiHKCI	CYCGRG	1 cut(s)	662
BslI	CCNNNNNNNGG	1 cut(s)	689
BsmAI	GTCTC	1 cut(s)	11
BsnI	GGCC	1 cut(s)	891
BsoBI	CYCGRG	1 cut(s)	662
Bsp143I	GATC	5 cut(s)	48, 157, 202, 280, 477
BspACI	CCGC	1 cut(s)	451
BspANI	GGCC	1 cut(s)	891
BspCNI	CTCAG	4 cut(s)	163, 280, 466, 694
BspLI	GGNNCC	2 cut(s)	9, 204
BspMAI	CTGCAG	1 cut(s)	487
BspPI	GGATC	3 cut(s)	165, 197, 210
BsrDI	GCAATG	2 cut(s)	107, 539
BsrI	ACTGG	3 cut(s)	430, 571, 779
BssMI	GATC	5 cut(s)	48, 157, 202, 280, 477
Bst4CI	ACNGT	2 cut(s)	32, 635
BstBAI	YACGTR	1 cut(s)	23
BstDEI	CTNAG	6 cut(s)	171, 267, 272, 435, 474, 702
BstENI	CCTNNNNNAGG	1 cut(s)	687
BstF5I	GGATG	2 cut(s)	38, 591
BstKTI	GATC	5 cut(s)	51, 160, 205, 283, 480
BstMAI	GTCTC	1 cut(s)	11
BstMBI	GATC	5 cut(s)	48, 157, 202, 280, 477
BstNSI	RCATGY	2 cut(s)	247, 772
BstSFI	CTRYAG	2 cut(s)	483, 608
BstV1I	GCAGC	1 cut(s)	557
BstV2I	GAAGAC	1 cut(s)	608
BstX2I	RGATCY	1 cut(s)	202
BstYI	RGATCY	1 cut(s)	202
Bsu36I	CCTNAGG	1 cut(s)	171
BsuRI	GGCC	1 cut(s)	891
BtgZI	GCGATG	1 cut(s)	87
BtsCI	GGATG	2 cut(s)	38, 591
BtsI	GCAGTG	1 cut(s)	480
BtsIMutI	CAGTG	3 cut(s)	423, 480, 564
CaiI	CAGNNNCTG	1 cut(s)	491
Csp6I	GTAC	4 cut(s)	247, 772, 787, 903
CviAII	CATG	3 cut(s)	244, 460, 769
CviJI	RGCY	9 cut(s)	10, 271, 379, 473, 570, 613, 682, 706, 891
CviKI_1	RGCY	9 cut(s)	10, 271, 379, 473, 570, 613, 682, 706, 891
CviQI	GTAC	4 cut(s)	247, 772, 787, 903
DdeI	CTNAG	6 cut(s)	171, 267, 272, 435, 474, 702
DpnI	GATC	5 cut(s)	50, 159, 204, 282, 479
DpnII	GATC	5 cut(s)	48, 157, 202, 280, 477
Eco32I	GATATC	1 cut(s)	56
Eco57I	CTGAAG	3 cut(s)	273, 321, 913
Eco81I	CCTNAGG	1 cut(s)	171
Eco88I	CYCGRG	1 cut(s)	662
EcoNI	CCTNNNNNAGG	1 cut(s)	687
EcoRV	GATATC	1 cut(s)	56
FaeI	CATG	3 cut(s)	247, 463, 772
FatI	CATG	3 cut(s)	243, 459, 768
FbaI	TGATCA	1 cut(s)	48
Fnu4HI	GCNGC	1 cut(s)	571
FokI	GGATG	2 cut(s)	25, 578
Fsp4HI	GCNGC	1 cut(s)	571
FspBI	CTAG	1 cut(s)	946
GluI	GCNGC	1 cut(s)	571
GsuI	CTGGAG	1 cut(s)	239
HaeIII	GGCC	1 cut(s)	891
Hin1II	CATG	3 cut(s)	247, 463, 772
HinfI	GANTC	7 cut(s)	138, 209, 431, 488, 604, 653, 658
HphI	GGTGA	5 cut(s)	44, 172, 440, 809, 818
Hpy188I	TCNGA	9 cut(s)	53, 60, 137, 253, 301, 526, 623, 703, 932
Hpy188III	TCNNGA	7 cut(s)	81, 206, 218, 390, 499, 579, 662
HpyAV	CCTTC	5 cut(s)	248, 496, 746, 902, 927
HpyCH4III	ACNGT	2 cut(s)	32, 635
HpyCH4IV	ACGT	1 cut(s)	22
HpyCH4V	TGCA	2 cut(s)	485, 647
HpyF3I	CTNAG	6 cut(s)	171, 267, 272, 435, 474, 702
HpySE526I	ACGT	1 cut(s)	22
Hsp92II	CATG	3 cut(s)	247, 463, 772
Ksp22I	TGATCA	1 cut(s)	48
Kzo9I	GATC	5 cut(s)	48, 157, 202, 280, 477
LmnI	GCTCC	1 cut(s)	7
Lsp1109I	GCAGC	1 cut(s)	557
LweI	GCATC	1 cut(s)	47
MaeI	CTAG	1 cut(s)	946
MaeII	ACGT	1 cut(s)	22
MaeIII	GTNAC	4 cut(s)	23, 562, 640, 718
MalI	GATC	5 cut(s)	50, 159, 204, 282, 479
MboI	GATC	5 cut(s)	48, 157, 202, 280, 477
MboII	GAAGA	5 cut(s)	84, 255, 525, 613, 812
MflI	RGATCY	1 cut(s)	202
MluCI	AATT	4 cut(s)	76, 145, 463, 849
MlyI	GAGTC	2 cut(s)	497, 598
MnlI	CCTC	5 cut(s)	166, 352, 693, 828, 930
MseI	TTAA	1 cut(s)	225
MslI	CAYNNNNRTG	1 cut(s)	516
NdeII	GATC	5 cut(s)	48, 157, 202, 280, 477
NlaIII	CATG	3 cut(s)	247, 463, 772
NlaIV	GGNNCC	2 cut(s)	9, 204
NmuCI	GTSAC	2 cut(s)	562, 640
NspI	RCATGY	2 cut(s)	247, 772
PciI	ACATGT	1 cut(s)	768
PfeI	GAWTC	5 cut(s)	138, 209, 431, 653, 658
PkrI	GCNGC	1 cut(s)	572
PleI	GAGTC	2 cut(s)	496, 598
PpsI	GAGTC	2 cut(s)	496, 598
Ppu21I	YACGTR	1 cut(s)	23
PscI	ACATGT	1 cut(s)	768
PshBI	ATTAAT	1 cut(s)	225
PsiI	TTATAA	2 cut(s)	66, 738
PspN4I	GGNNCC	2 cut(s)	9, 204
PstI	CTGCAG	1 cut(s)	487
PstNI	CAGNNNCTG	1 cut(s)	491
PsuI	RGATCY	1 cut(s)	202
RsaI	GTAC	4 cut(s)	248, 773, 788, 904
RsaNI	GTAC	4 cut(s)	247, 772, 787, 903
RseI	CAYNNNNRTG	1 cut(s)	516
SaqAI	TTAA	1 cut(s)	225
SatI	GCNGC	1 cut(s)	571
Sau3AI	GATC	5 cut(s)	48, 157, 202, 280, 477
SchI	GAGTC	2 cut(s)	497, 598
SfaNI	GCATC	1 cut(s)	47
SfcI	CTRYAG	2 cut(s)	483, 608
SmiMI	CAYNNNNRTG	1 cut(s)	516
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
Sse9I	AATT	4 cut(s)	76, 145, 463, 849
SsiI	CCGC	1 cut(s)	451
SspMI	CTAG	1 cut(s)	946
TaaI	ACNGT	2 cut(s)	32, 635
TaiI	ACGT	1 cut(s)	25
TaqI	TCGA	3 cut(s)	164, 656, 914
TasI	AATT	4 cut(s)	76, 145, 463, 849
TatI	WGTACW	2 cut(s)	246, 771
TfiI	GAWTC	5 cut(s)	138, 209, 431, 653, 658
Tru1I	TTAA	1 cut(s)	225
Tru9I	TTAA	1 cut(s)	225
TscAI	CASTG	3 cut(s)	430, 487, 571
TseFI	GTSAC	2 cut(s)	562, 640
TseI	GCWGC	1 cut(s)	570
Tsp45I	GTSAC	2 cut(s)	562, 640
TspDTI	ATGAA	4 cut(s)	84, 476, 684, 765
TspGWI	ACGGA	1 cut(s)	338
TspRI	CASTG	3 cut(s)	430, 487, 571
VspI	ATTAAT	1 cut(s)	225
XagI	CCTNNNNNAGG	1 cut(s)	687
XceI	RCATGY	2 cut(s)	247, 772
XspI	CTAG	1 cut(s)	946

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.