Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001242

Physical Location & Seq

Genomic Coordinates Reverse (-)

1525572 .. 1527488

Gene Structure 1917 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0010700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGAAACCGGCGGATCGGATTCCGGAAAAGGCCACAAATTCAGCTGGGTTTTGTATGATGAGAAACACATGGAGGGATGAACAGCACCCGTCTTTCATAAACTTCATCTCCAATTTCCTCACTGCAAATTTGTTCCGGCTTAAATTTGTCTCAATTCCAGCAGACTTCATTTTCAACTGTGGGGGTTCATCAGTGGCCTTCATCTTTGTCACAAGCTTGGATTCAACTAAAGTCTCCCAAATCTTCGGCAGAACTCAAATACTGAAGCAGCAATTTGCACATCTCTATGTTATCTGTACCCTCCCAACCAAGGAACAAAATGACTTGTTTGTTCGTTCTTACTTCAATTTCGGATTGGAGCTTGGTAAGCCGGCGTTTGTTCTGGTTAAAGACTTAGAGATGGGTTTTGAAAAGATGCTAAGGATAGTTTATGCACGCGGAGTATGCAAGCGAGAGGATGTCACCGCAAAATTGAAGGCTCAGAGAGAGCAATATGTGCAAACCGTGGGCGTGTTTCAAAGAGTGATCACATCCATACCAGGAGTTGACAATCATGATGCAAATGCGCTTAACCAAGCAGTAGGATCAATTGAAGCAATTGCCAAGGAATCGAAGGACCATATTCTGGAAAACACAGACCTTTCAGCTGACAAGGCAGAAGTGCTTTCAAGGTTTTTCAGGGATCAAAAGTTTTACCTCAGTCCCAAGATCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

238

Amino Acids

27.04

Weight (kDa)

9.0

Isoelectric Point (pI)

27.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HHH_5	PF14520	176 - 221	6.1e-06	Helix-hairpin-helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19400 AT1G19400 AT1G19400 AT1G19400 AT1G75180 AT1G75180 AT1G75180 AT1G75180
fragaria_vesca	FvH4_2g08760 FvH4_2g39840 FvH4_2g39840 FvH4_2g39840
malus_domestica	MD08G1032000.v1.1 MD10G1076500.v1.1 MD15G1028000.v1.1
prunus_persica	Prupe.1G379700_v2.0.a1 Prupe.1G379700_v2.0.a1 Prupe.1G379700_v2.0.a1 Prupe.1G379700_v2.0.a1 Prupe.8G097300_v2.0.a1 Prupe.8G097300_v2.0.a1 Prupe.8G097300_v2.0.a1 Prupe.8G097300_v2.0.a1
pyrus_communis	pycom08g02530 pycom15g02400
rosa_chinensis	RchiOBHm_Chr6g0264221 RchiOBHm_Chr6g0301001
rosa_laevigata	RLG00000011286 RLG00000014279
rosa_multiflora	Rmu_co8302127.1_g000001 Rmu_sc0003168.1_g000005 Rmu_sc0005114.1_g000014
rosa_roxburghii	Rroxscaffold_176G00431620 Rroxscaffold_7G00167270 Rroxscaffold_7G00203390
rosa_rugosa	Rorug06G0010200 Rorug06G0010300 Rorug06G0010400 Rorug06G0010500.1 Rorug06G0010600 Rorug06G0010600 Rorug06G0010700 Rorug06G0010800 Rorug06G0010900 Rorug06G0011000 Rorug06G0299900
rosa_samantha	Rh6AG130300 Rh6AG413800 Rh6BG127600 Rh6BG420700 Rh6CG126200 Rh6CG428300 Rh6DG112900 Rh6DG413700
rosa_wichuraiana	Rw6G011350 Rw6G011410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	625
AccII	CGCG	1 cut(s)	438
AccIII	TCCGGA	1 cut(s)	22
AciI	CCGC	3 cut(s)	11, 438, 465
AclWI	GGATC	3 cut(s)	21, 592, 690
AcsI	RAATTY	3 cut(s)	37, 127, 143
AcuI	CTGAAG	1 cut(s)	284
AfaI	GTAC	1 cut(s)	298
AfiI	CCNNNNNNNGG	2 cut(s)	310, 625
AgsI	TTSAA	8 cut(s)	175, 225, 346, 410, 475, 518, 593, 669
AjnI	CCWGG	1 cut(s)	538
AluBI	AGCT	4 cut(s)	44, 216, 361, 647
AluI	AGCT	4 cut(s)	44, 216, 361, 647
Alw26I	GTCTC	2 cut(s)	154, 238
AlwI	GGATC	3 cut(s)	21, 592, 690
Aor13HI	TCCGGA	1 cut(s)	22
AoxI	GGCC	2 cut(s)	30, 195
ApeKI	GCWGC	1 cut(s)	268
ApoI	RAATTY	3 cut(s)	37, 127, 143
AspLEI	GCGC	1 cut(s)	568
AspS9I	GGNCC	1 cut(s)	616
AsuHPI	GGTGA	1 cut(s)	454
AvaII	GGWCC	1 cut(s)	616
BbvI	GCAGC	1 cut(s)	280
BccI	CCATC	1 cut(s)	394
BciT130I	CCWGG	1 cut(s)	540
BclI	TGATCA	1 cut(s)	525
BcoDI	GTCTC	2 cut(s)	154, 238
BisI	GCNGC	1 cut(s)	269
BlsI	GCNGC	1 cut(s)	270
Bme1390I	CCNGG	1 cut(s)	540
Bme18I	GGWCC	1 cut(s)	616
BmgT120I	GGNCC	1 cut(s)	616
BmrFI	CCNGG	1 cut(s)	540
BmsI	GCATC	2 cut(s)	405, 547
Bpu10I	CCTNAGC	1 cut(s)	419
BsaJI	CCNNGG	3 cut(s)	309, 504, 603
BsaWI	WCCGGW	1 cut(s)	22
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bsc4I	CCNNNNNNNGG	2 cut(s)	310, 625
Bse118I	RCCGGY	2 cut(s)	7, 370
BseAI	TCCGGA	1 cut(s)	22
BseBI	CCWGG	1 cut(s)	540
BseDI	CCNNGG	3 cut(s)	309, 504, 603
BseGI	GGATG	3 cut(s)	82, 463, 530
BseLI	CCNNNNNNNGG	2 cut(s)	310, 625
BseMII	CTCAG	2 cut(s)	494, 712
BseXI	GCAGC	1 cut(s)	280
BseYI	CCCAGC	1 cut(s)	44
Bsh1236I	CGCG	1 cut(s)	438
BshFI	GGCC	2 cut(s)	32, 197
BsiSI	CCGG	4 cut(s)	8, 23, 136, 371
BslFI	GGGAC	1 cut(s)	687
BslI	CCNNNNNNNGG	2 cut(s)	310, 625
BsmAI	GTCTC	2 cut(s)	154, 238
BsmFI	GGGAC	1 cut(s)	687
BsnI	GGCC	2 cut(s)	32, 197
Bsp13I	TCCGGA	1 cut(s)	22
Bsp143I	GATC	5 cut(s)	13, 525, 584, 682, 708
BspACI	CCGC	3 cut(s)	11, 438, 465
BspANI	GGCC	2 cut(s)	32, 197
BspCNI	CTCAG	2 cut(s)	493, 711
BspEI	TCCGGA	1 cut(s)	22
BspFNI	CGCG	1 cut(s)	438
BspHI	TCATGA	1 cut(s)	553
BspPI	GGATC	3 cut(s)	21, 592, 690
BsrFI	RCCGGY	2 cut(s)	7, 370
BssAI	RCCGGY	2 cut(s)	7, 370
BssECI	CCNNGG	3 cut(s)	309, 504, 603
BssMI	GATC	5 cut(s)	13, 525, 584, 682, 708
BssT1I	CCWWGG	2 cut(s)	309, 603
Bst2UI	CCWGG	1 cut(s)	540
Bst4CI	ACNGT	2 cut(s)	179, 505
BstAPI	GCANNNNNTGC	1 cut(s)	496
BstC8I	GCNNGC	3 cut(s)	372, 436, 449
BstDEI	CTNAG	4 cut(s)	394, 419, 480, 698
BstDSI	CCRYGG	1 cut(s)	504
BstF5I	GGATG	3 cut(s)	82, 463, 530
BstFNI	CGCG	1 cut(s)	438
BstHHI	GCGC	1 cut(s)	568
BstKTI	GATC	5 cut(s)	16, 528, 587, 685, 711
BstMAI	GTCTC	2 cut(s)	154, 238
BstMBI	GATC	5 cut(s)	13, 525, 584, 682, 708
BstMWI	GCNNNNNNNGC	4 cut(s)	367, 444, 496, 653
BstNI	CCWGG	1 cut(s)	540
BstSCI	CCNGG	1 cut(s)	538
BstUI	CGCG	1 cut(s)	438
BstV1I	GCAGC	1 cut(s)	280
BsuRI	GGCC	2 cut(s)	32, 197
BtgI	CCRYGG	1 cut(s)	504
BtsCI	GGATG	3 cut(s)	82, 463, 530
BtsI	GCAGTG	1 cut(s)	120
BtsIMutI	CAGTG	2 cut(s)	120, 198
Cac8I	GCNNGC	3 cut(s)	372, 436, 449
CciI	TCATGA	1 cut(s)	553
CfoI	GCGC	1 cut(s)	568
Cfr10I	RCCGGY	2 cut(s)	7, 370
Cfr13I	GGNCC	1 cut(s)	616
Csp6I	GTAC	1 cut(s)	297
CviAII	CATG	2 cut(s)	69, 554
CviJI	RGCY	9 cut(s)	32, 44, 139, 197, 216, 361, 370, 479, 647
CviKI_1	RGCY	9 cut(s)	32, 44, 139, 197, 216, 361, 370, 479, 647
CviQI	GTAC	1 cut(s)	297
DdeI	CTNAG	4 cut(s)	394, 419, 480, 698
DpnI	GATC	5 cut(s)	15, 527, 586, 684, 710
DpnII	GATC	5 cut(s)	13, 525, 584, 682, 708
EciI	GGCGGA	1 cut(s)	26
Eco130I	CCWWGG	2 cut(s)	309, 603
Eco47I	GGWCC	1 cut(s)	616
Eco57I	CTGAAG	1 cut(s)	284
EcoRII	CCWGG	1 cut(s)	538
EcoT14I	CCWWGG	2 cut(s)	309, 603
ErhI	CCWWGG	2 cut(s)	309, 603
FaeI	CATG	2 cut(s)	72, 557
FaqI	GGGAC	1 cut(s)	687
FatI	CATG	2 cut(s)	68, 553
FbaI	TGATCA	1 cut(s)	525
Fnu4HI	GCNGC	1 cut(s)	269
FokI	GGATG	3 cut(s)	89, 470, 517
Fsp4HI	GCNGC	1 cut(s)	269
GlaI	GCGC	1 cut(s)	567
GluI	GCNGC	1 cut(s)	269
GsaI	CCCAGC	1 cut(s)	48
HaeIII	GGCC	2 cut(s)	32, 197
HapII	CCGG	4 cut(s)	8, 23, 136, 371
HhaI	GCGC	1 cut(s)	568
Hin1II	CATG	2 cut(s)	72, 557
Hin6I	GCGC	1 cut(s)	566
HinP1I	GCGC	1 cut(s)	566
HincII	GTYRAC	1 cut(s)	547
HindII	GTYRAC	1 cut(s)	547
HindIII	AAGCTT	1 cut(s)	214
HinfI	GANTC	3 cut(s)	19, 221, 608
HpaII	CCGG	4 cut(s)	8, 23, 136, 371
HphI	GGTGA	1 cut(s)	454
Hpy166II	GTNNAC	1 cut(s)	547
Hpy188I	TCNGA	3 cut(s)	18, 353, 483
Hpy188III	TCNNGA	3 cut(s)	23, 554, 626
Hpy8I	GTNNAC	1 cut(s)	547
HpyAV	CCTTC	3 cut(s)	208, 469, 607
HpyCH4III	ACNGT	2 cut(s)	179, 505
HpyCH4V	TGCA	6 cut(s)	125, 278, 434, 447, 499, 560
HpyF10VI	GCNNNNNNNGC	4 cut(s)	367, 444, 496, 653
HpyF3I	CTNAG	4 cut(s)	394, 419, 480, 698
Hsp92II	CATG	2 cut(s)	72, 557
HspAI	GCGC	1 cut(s)	566
Kpn2I	TCCGGA	1 cut(s)	22
KroI	GCCGGC	1 cut(s)	370
KroNI	GCCGGC	1 cut(s)	372
Ksp22I	TGATCA	1 cut(s)	525
Kzo9I	GATC	5 cut(s)	13, 525, 584, 682, 708
LmnI	GCTCC	1 cut(s)	358
Lsp1109I	GCAGC	1 cut(s)	280
LweI	GCATC	2 cut(s)	405, 547
MaeIII	GTNAC	2 cut(s)	208, 460
MalI	GATC	5 cut(s)	15, 527, 586, 684, 710
MboI	GATC	5 cut(s)	13, 525, 584, 682, 708
MboII	GAAGA	1 cut(s)	235
MfeI	CAATTG	3 cut(s)	588, 597, 712
MnlI	CCTC	5 cut(s)	66, 128, 311, 448, 707
MroI	TCCGGA	1 cut(s)	22
MroNI	GCCGGC	1 cut(s)	370
MseI	TTAA	3 cut(s)	141, 387, 570
MslI	CAYNNNNRTG	1 cut(s)	285
MspA1I	CMGCKG	2 cut(s)	44, 647
MspI	CCGG	4 cut(s)	8, 23, 136, 371
MspR9I	CCNGG	1 cut(s)	540
MunI	CAATTG	3 cut(s)	588, 597, 712
MvaI	CCWGG	1 cut(s)	540
MvnI	CGCG	1 cut(s)	438
MwoI	GCNNNNNNNGC	4 cut(s)	367, 444, 496, 653
NaeI	GCCGGC	1 cut(s)	372
NdeII	GATC	5 cut(s)	13, 525, 584, 682, 708
NgoMIV	GCCGGC	1 cut(s)	370
NlaIII	CATG	2 cut(s)	72, 557
NmuCI	GTSAC	2 cut(s)	208, 460
PagI	TCATGA	1 cut(s)	553
PdiI	GCCGGC	1 cut(s)	372
PfeI	GAWTC	3 cut(s)	19, 221, 608
PflMI	CCANNNNNTGG	1 cut(s)	625
PkrI	GCNGC	1 cut(s)	270
Psp6I	CCWGG	1 cut(s)	538
PspFI	CCCAGC	1 cut(s)	44
PspGI	CCWGG	1 cut(s)	538
PspPI	GGNCC	1 cut(s)	616
PvuII	CAGCTG	2 cut(s)	44, 647
RsaI	GTAC	1 cut(s)	298
RsaNI	GTAC	1 cut(s)	297
RseI	CAYNNNNRTG	1 cut(s)	285
SaqAI	TTAA	3 cut(s)	141, 387, 570
SatI	GCNGC	1 cut(s)	269
Sau3AI	GATC	5 cut(s)	13, 525, 584, 682, 708
Sau96I	GGNCC	1 cut(s)	616
ScrFI	CCNGG	1 cut(s)	540
SetI	ASST	7 cut(s)	46, 218, 363, 642, 649, 674, 699
SfaNI	GCATC	2 cut(s)	405, 547
SinI	GGWCC	1 cut(s)	616
SmiMI	CAYNNNNRTG	1 cut(s)	285
SsiI	CCGC	3 cut(s)	11, 438, 465
StyD4I	CCNGG	1 cut(s)	538
StyI	CCWWGG	2 cut(s)	309, 603
TaaI	ACNGT	2 cut(s)	179, 505
TaqI	TCGA	1 cut(s)	611
TfiI	GAWTC	3 cut(s)	19, 221, 608
Tru1I	TTAA	3 cut(s)	141, 387, 570
Tru9I	TTAA	3 cut(s)	141, 387, 570
TscAI	CASTG	2 cut(s)	127, 198
TseFI	GTSAC	2 cut(s)	208, 460
TseI	GCWGC	1 cut(s)	268
Tsp45I	GTSAC	2 cut(s)	208, 460
TspDTI	ATGAA	7 cut(s)	17, 85, 93, 94, 157, 177, 190
TspRI	CASTG	2 cut(s)	127, 198
Van91I	CCANNNNNTGG	1 cut(s)	625
VpaK11BI	GGWCC	1 cut(s)	616
XapI	RAATTY	3 cut(s)	37, 127, 143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.