Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0001242

Physical Location & Seq

Genomic Coordinates Forward (+)

1869928 .. 1871451

Gene Structure 1524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g02530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGTCTAATAGCAACGGTTTCGTTGGGGAATCAAAAAACAATGCCAAGCGATGGAGCATGAATTGTGAATCAGATATCAGTGCTTGTACTGGATTTTTGAAAGGGAAACATCTTGGTGGCGCTGAATTACCTGCCCCAACCATTGAAGTCTACATCACAGGGTGCTTCTCCGGCACACCGATCATCTTAACCAAGACCCTGCAGCTTCATTTTAGAAAGAAACACAATAAGAAGAGCATGTTGGACGCTATACCCGAATACGAGACAACTGAATGCCAGAAAGATGTCTCGCCCAGAGTTGATATGGAGGTAGCGGAATACAGGCCGGAGAACGAGGAAGAGTACAACAATATGTACTGGAGGAGGACGGAATATATGGATGGTGAAGACGGAGAACTCTCATGGTTCAATGCTGGTGTTAGAGTTGGCGTGGGTATCGGACTTGGCGTTTGCCTTGGAGTTGGTATAGGGGTTGGTTTGCTGGTTCGTACATACCAAACGACCACGCGAACTTTCAAGAGGCGTATGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

178

Amino Acids

19.87

Weight (kDa)

6.83

Isoelectric Point (pI)

50.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19400 AT1G19400 AT1G19400 AT1G19400 AT1G75180 AT1G75180 AT1G75180 AT1G75180
fragaria_vesca	FvH4_2g08760 FvH4_2g39840 FvH4_2g39840 FvH4_2g39840
malus_domestica	MD08G1032000.v1.1 MD10G1076500.v1.1 MD15G1028000.v1.1
prunus_persica	Prupe.1G379700_v2.0.a1 Prupe.1G379700_v2.0.a1 Prupe.1G379700_v2.0.a1 Prupe.1G379700_v2.0.a1 Prupe.8G097300_v2.0.a1 Prupe.8G097300_v2.0.a1 Prupe.8G097300_v2.0.a1 Prupe.8G097300_v2.0.a1
pyrus_communis	pycom08g02530 pycom15g02400
rosa_chinensis	RchiOBHm_Chr6g0264221 RchiOBHm_Chr6g0301001
rosa_laevigata	RLG00000011286 RLG00000014279
rosa_multiflora	Rmu_co8302127.1_g000001 Rmu_sc0003168.1_g000005 Rmu_sc0005114.1_g000014
rosa_roxburghii	Rroxscaffold_176G00431620 Rroxscaffold_7G00167270 Rroxscaffold_7G00203390
rosa_rugosa	Rorug06G0010200 Rorug06G0010300 Rorug06G0010400 Rorug06G0010500.1 Rorug06G0010600 Rorug06G0010600 Rorug06G0010700 Rorug06G0010800 Rorug06G0010900 Rorug06G0011000 Rorug06G0299900
rosa_samantha	Rh6AG130300 Rh6AG413800 Rh6BG127600 Rh6BG420700 Rh6CG126200 Rh6CG428300 Rh6DG112900 Rh6DG413700
rosa_wichuraiana	Rw6G011350 Rw6G011410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	139
AccB7I	CCANNNNNTGG	1 cut(s)	51
AccI	GTMKAC	1 cut(s)	150
AccII	CGCG	1 cut(s)	508
AciI	CCGC	1 cut(s)	314
AdeI	CACNNNGTG	1 cut(s)	162
AfaI	GTAC	4 cut(s)	88, 344, 356, 490
AfiI	CCNNNNNNNGG	1 cut(s)	51
AgsI	TTSAA	4 cut(s)	100, 146, 409, 517
AjuI	GAANNNNNNNTTGG	2 cut(s)	224, 256
AluBI	AGCT	1 cut(s)	205
AluI	AGCT	1 cut(s)	205
Alw26I	GTCTC	2 cut(s)	257, 292
AoxI	GGCC	1 cut(s)	323
ApeKI	GCWGC	1 cut(s)	202
ArsI	GACNNNNNNTTYG	2 cut(s)	432, 464
AspLEI	GCGC	1 cut(s)	122
AsuHPI	GGTGA	1 cut(s)	395
BbsI	GAAGAC	1 cut(s)	393
BbvI	GCAGC	1 cut(s)	214
BccI	CCATC	2 cut(s)	45, 374
BcgI	CGANNNNNNTGC	1 cut(s)	35
BcoDI	GTCTC	2 cut(s)	257, 292
BfmI	CTRYAG	1 cut(s)	200
BfoI	RGCGCY	1 cut(s)	123
BfuAI	ACCTGC	1 cut(s)	139
BisI	GCNGC	1 cut(s)	203
BlsI	GCNGC	1 cut(s)	204
BpiI	GAAGAC	1 cut(s)	393
BpmI	CTGGAG	1 cut(s)	379
BsaJI	CCNNGG	1 cut(s)	454
Bsc4I	CCNNNNNNNGG	1 cut(s)	51
Bse1I	ACTGG	2 cut(s)	94, 362
BseDI	CCNNGG	1 cut(s)	454
BseGI	GGATG	1 cut(s)	385
BseLI	CCNNNNNNNGG	1 cut(s)	51
BseNI	ACTGG	2 cut(s)	94, 362
BseRI	GAGGAG	1 cut(s)	376
BseXI	GCAGC	1 cut(s)	214
Bsh1236I	CGCG	1 cut(s)	508
BshFI	GGCC	1 cut(s)	325
BsiSI	CCGG	2 cut(s)	171, 326
BslI	CCNNNNNNNGG	1 cut(s)	51
BsmAI	GTCTC	2 cut(s)	257, 292
BsmI	GAATGC	1 cut(s)	278
BsnI	GGCC	1 cut(s)	325
Bsp143I	GATC	1 cut(s)	180
BspACI	CCGC	1 cut(s)	314
BspANI	GGCC	1 cut(s)	325
BspFNI	CGCG	1 cut(s)	508
BspMAI	CTGCAG	1 cut(s)	204
BspMI	ACCTGC	1 cut(s)	139
BspQI	GCTCTTC	1 cut(s)	227
BsrI	ACTGG	2 cut(s)	94, 362
BssECI	CCNNGG	1 cut(s)	454
BssMI	GATC	1 cut(s)	180
BssT1I	CCWWGG	1 cut(s)	454
Bst4CI	ACNGT	1 cut(s)	17
Bst6I	CTCTTC	2 cut(s)	227, 333
BstF5I	GGATG	1 cut(s)	385
BstFNI	CGCG	1 cut(s)	508
BstH2I	RGCGCY	1 cut(s)	123
BstHHI	GCGC	1 cut(s)	122
BstKTI	GATC	1 cut(s)	183
BstMAI	GTCTC	2 cut(s)	257, 292
BstMBI	GATC	1 cut(s)	180
BstMWI	GCNNNNNNNGC	1 cut(s)	171
BstNSI	RCATGY	1 cut(s)	241
BstSFI	CTRYAG	1 cut(s)	200
BstUI	CGCG	1 cut(s)	508
BstV1I	GCAGC	1 cut(s)	214
BstV2I	GAAGAC	1 cut(s)	393
BsuRI	GGCC	1 cut(s)	325
BtgZI	GCGATG	1 cut(s)	64
BtsCI	GGATG	1 cut(s)	385
BtsIMutI	CAGTG	1 cut(s)	85
BveI	ACCTGC	1 cut(s)	139
CfoI	GCGC	1 cut(s)	122
CseI	GACGC	1 cut(s)	254
Csp6I	GTAC	4 cut(s)	87, 343, 355, 489
CviAII	CATG	3 cut(s)	58, 238, 402
CviJI	RGCY	2 cut(s)	205, 325
CviKI_1	RGCY	2 cut(s)	205, 325
CviQI	GTAC	4 cut(s)	87, 343, 355, 489
DpnI	GATC	1 cut(s)	182
DpnII	GATC	1 cut(s)	180
DraIII	CACNNNGTG	1 cut(s)	162
Eam1104I	CTCTTC	2 cut(s)	227, 333
EarI	CTCTTC	2 cut(s)	227, 333
Eco130I	CCWWGG	1 cut(s)	454
Eco32I	GATATC	1 cut(s)	76
EcoRV	GATATC	1 cut(s)	76
EcoT14I	CCWWGG	1 cut(s)	454
ErhI	CCWWGG	1 cut(s)	454
FaeI	CATG	3 cut(s)	61, 241, 405
FatI	CATG	3 cut(s)	57, 237, 401
FblI	GTMKAC	1 cut(s)	150
Fnu4HI	GCNGC	1 cut(s)	203
FokI	GGATG	1 cut(s)	392
Fsp4HI	GCNGC	1 cut(s)	203
GlaI	GCGC	1 cut(s)	121
GluI	GCNGC	1 cut(s)	203
GsuI	CTGGAG	1 cut(s)	379
HaeII	RGCGCY	1 cut(s)	123
HaeIII	GGCC	1 cut(s)	325
HapII	CCGG	2 cut(s)	171, 326
HgaI	GACGC	1 cut(s)	254
HhaI	GCGC	1 cut(s)	122
Hin1II	CATG	3 cut(s)	61, 241, 405
Hin6I	GCGC	1 cut(s)	120
HinP1I	GCGC	1 cut(s)	120
HinfI	GANTC	2 cut(s)	29, 68
HpaII	CCGG	2 cut(s)	171, 326
HphI	GGTGA	1 cut(s)	395
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188I	TCNGA	2 cut(s)	73, 440
Hpy188III	TCNNGA	1 cut(s)	517
Hpy8I	GTNNAC	1 cut(s)	151
HpyCH4III	ACNGT	1 cut(s)	17
HpyCH4V	TGCA	1 cut(s)	202
HpyF10VI	GCNNNNNNNGC	1 cut(s)	171
Hsp92II	CATG	3 cut(s)	61, 241, 405
HspAI	GCGC	1 cut(s)	120
Kzo9I	GATC	1 cut(s)	180
LguI	GCTCTTC	1 cut(s)	227
LmnI	GCTCC	1 cut(s)	54
Lsp1109I	GCAGC	1 cut(s)	214
MalI	GATC	1 cut(s)	182
MboI	GATC	1 cut(s)	180
MboII	GAAGA	3 cut(s)	244, 350, 398
MluCI	AATT	2 cut(s)	61, 125
MmeI	TCCRAC	1 cut(s)	222
MnlI	CCTC	5 cut(s)	301, 328, 354, 357, 513
MseI	TTAA	1 cut(s)	188
MslI	CAYNNNNRTG	1 cut(s)	114
MspI	CCGG	2 cut(s)	171, 326
Mva1269I	GAATGC	1 cut(s)	278
MvnI	CGCG	1 cut(s)	508
MwoI	GCNNNNNNNGC	1 cut(s)	171
NdeII	GATC	1 cut(s)	180
NlaIII	CATG	3 cut(s)	61, 241, 405
NspI	RCATGY	1 cut(s)	241
PciSI	GCTCTTC	1 cut(s)	227
PcsI	WCGNNNNNNNCGW	2 cut(s)	252, 444
PctI	GAATGC	1 cut(s)	278
PfeI	GAWTC	2 cut(s)	29, 68
PflMI	CCANNNNNTGG	1 cut(s)	51
PkrI	GCNGC	1 cut(s)	204
PstI	CTGCAG	1 cut(s)	204
RsaI	GTAC	4 cut(s)	88, 344, 356, 490
RsaNI	GTAC	4 cut(s)	87, 343, 355, 489
RseI	CAYNNNNRTG	1 cut(s)	114
SapI	GCTCTTC	1 cut(s)	227
SaqAI	TTAA	1 cut(s)	188
SatI	GCNGC	1 cut(s)	203
Sau3AI	GATC	1 cut(s)	180
SetI	ASST	3 cut(s)	133, 207, 312
SfcI	CTRYAG	1 cut(s)	200
SmiMI	CAYNNNNRTG	1 cut(s)	114
Sse9I	AATT	2 cut(s)	61, 125
SsiI	CCGC	1 cut(s)	314
StyI	CCWWGG	1 cut(s)	454
TaaI	ACNGT	1 cut(s)	17
TasI	AATT	2 cut(s)	61, 125
TatI	WGTACW	3 cut(s)	86, 342, 354
TfiI	GAWTC	2 cut(s)	29, 68
Tru1I	TTAA	1 cut(s)	188
Tru9I	TTAA	1 cut(s)	188
TscAI	CASTG	1 cut(s)	85
TseI	GCWGC	1 cut(s)	202
TspDTI	ATGAA	2 cut(s)	74, 197
TspGWI	ACGGA	2 cut(s)	383, 405
TspRI	CASTG	1 cut(s)	85
Van91I	CCANNNNNTGG	1 cut(s)	51
XceI	RCATGY	1 cut(s)	241
XcmI	CCANNNNNNNNNTGG	1 cut(s)	301
XmiI	GTMKAC	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.