Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0001242

Physical Location & Seq

Genomic Coordinates Forward (+)

1401284 .. 1403222

Gene Structure 1939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g02400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGATGGTTCAAATGAAGTTTCAAGCAATGGTGAAGTTGAGAATCATGCCCTCCAGATTATAAGATACTCTCCTTACCAGCCCTGCAGTAAATTACCTTCATCTTGGTTTGATTTGAGAGTCTTCTATGTGAGGATCAGTAACTTTAAGGTTGATGATTCGACCCCAAAGTTTCTGACCCTCCATCATATTCCTTTAAGCCCGGATACCCTTTTGGAAGTCAATGGTGCTAAAACTAGCATTCACTCTGAAGGTGTTTCTTCACATCTTAGAAGGGATCGGGTAGATAAGAAATCTGAAGAGGCCACATTTGTGAATACAGACAGTATAAGGTTGACAGGGAGCGCGAGATTTGAGGTGTATGACAAAGATGATCTCATCCTCTCTGGGGTGTTAGAGATGTCTAATAGCAACAGTTTCGTCGGGGAATCAAAAAACAATGTCAAGCGATGGAGCATGAATTGTGAATCAGATATCAGTGCTTGCACTGGATTTTTGAAGGGGAAACATCTTGGTGGCGCTGAATTAACTGCACCAACCATTGAAGTTTACGTCACAGGGTGCTTCTCTGGCACACCGATCATCTTAACCAAGACCCTGCAGCTTCATTTTAGAAAGAAACACAATAGGAAGAGCACGTTGGGTGCAATACCAGAGTACGAGACAACCGAATGCCAGAAAGATGTCTCTCCTGGAGTTGATATGGAGGTAGCAGAGTACAGAAACTACAAGCCGGAGAACGAGGACAAGTACAACAATATGTACTGGAGGAGGACGGAATATATGGACGGTGAAGACGGAGAACTCTCATGGTTCAATGCTGGTGTGAGAGTTGGCGTGGGTATCGGACTTGGCGTTTGTCTTGGAGTTGGCATAGGGGTCGGTTTGCTGGTCCGTACTTACCAAACGACCACGCGAACTTTCAAGAGGCGCCTGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

314

Amino Acids

35.12

Weight (kDa)

6.47

Isoelectric Point (pI)

40.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19400 AT1G19400 AT1G19400 AT1G19400 AT1G75180 AT1G75180 AT1G75180 AT1G75180
fragaria_vesca	FvH4_2g08760 FvH4_2g39840 FvH4_2g39840 FvH4_2g39840
malus_domestica	MD08G1032000.v1.1 MD10G1076500.v1.1 MD15G1028000.v1.1
prunus_persica	Prupe.1G379700_v2.0.a1 Prupe.1G379700_v2.0.a1 Prupe.1G379700_v2.0.a1 Prupe.1G379700_v2.0.a1 Prupe.8G097300_v2.0.a1 Prupe.8G097300_v2.0.a1 Prupe.8G097300_v2.0.a1 Prupe.8G097300_v2.0.a1
pyrus_communis	pycom08g02530 pycom15g02400
rosa_chinensis	RchiOBHm_Chr6g0264221 RchiOBHm_Chr6g0301001
rosa_laevigata	RLG00000011286 RLG00000014279
rosa_multiflora	Rmu_co8302127.1_g000001 Rmu_sc0003168.1_g000005 Rmu_sc0005114.1_g000014
rosa_roxburghii	Rroxscaffold_176G00431620 Rroxscaffold_7G00167270 Rroxscaffold_7G00203390
rosa_rugosa	Rorug06G0010200 Rorug06G0010300 Rorug06G0010400 Rorug06G0010500.1 Rorug06G0010600 Rorug06G0010600 Rorug06G0010700 Rorug06G0010800 Rorug06G0010900 Rorug06G0011000 Rorug06G0299900
rosa_samantha	Rh6AG130300 Rh6AG413800 Rh6BG127600 Rh6BG420700 Rh6CG126200 Rh6CG428300 Rh6DG112900 Rh6DG413700
rosa_wichuraiana	Rw6G011350 Rw6G011410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	62
AccB1I	GGYRCC	1 cut(s)	930
AccII	CGCG	2 cut(s)	347, 916
AclWI	GGATC	2 cut(s)	143, 285
AcuI	CTGAAG	2 cut(s)	270, 318
AcyI	GRCGYC	1 cut(s)	931
AdeI	CACNNNGTG	1 cut(s)	561
AfaI	GTAC	5 cut(s)	659, 719, 752, 764, 898
AfiI	CCNNNNNNNGG	1 cut(s)	388
AgsI	TTSAA	6 cut(s)	12, 24, 499, 545, 817, 925
AjnI	CCWGG	2 cut(s)	691, 933
AjuI	GAANNNNNNNTTGG	2 cut(s)	623, 655
AleI	CACNNNNGTG	1 cut(s)	311
AluBI	AGCT	1 cut(s)	604
AluI	AGCT	1 cut(s)	604
Alw21I	GWGCWC	1 cut(s)	638
Alw26I	GTCTC	2 cut(s)	656, 691
AlwI	GGATC	2 cut(s)	143, 285
AoxI	GGCC	1 cut(s)	303
ApeKI	GCWGC	1 cut(s)	601
ArsI	GACNNNNNNTTYG	2 cut(s)	840, 872
AspLEI	GCGC	3 cut(s)	347, 521, 933
AspS9I	GGNCC	1 cut(s)	892
AsuC2I	CCSGG	1 cut(s)	203
AsuHPI	GGTGA	2 cut(s)	44, 803
AvaII	GGWCC	1 cut(s)	892
BanI	GGYRCC	1 cut(s)	930
BarI	GAAGNNNNNNTAC	2 cut(s)	82, 114
BbsI	GAAGAC	2 cut(s)	115, 801
Bbv12I	GWGCWC	1 cut(s)	638
BbvI	GCAGC	1 cut(s)	613
BccI	CCATC	2 cut(s)	192, 444
BcgI	CGANNNNNNTGC	4 cut(s)	400, 434, 862, 896
BciT130I	CCWGG	2 cut(s)	693, 935
BciVI	GTATCC	1 cut(s)	199
BcnI	CCSGG	1 cut(s)	203
BcoDI	GTCTC	2 cut(s)	656, 691
BfaI	CTAG	1 cut(s)	237
BfmI	CTRYAG	2 cut(s)	85, 599
BfoI	RGCGCY	2 cut(s)	522, 934
BfuI	GTATCC	1 cut(s)	199
BisI	GCNGC	1 cut(s)	602
BlsI	GCNGC	1 cut(s)	603
Bme1390I	CCNGG	3 cut(s)	203, 693, 935
Bme18I	GGWCC	1 cut(s)	892
BmgT120I	GGNCC	1 cut(s)	892
BmiI	GGNNCC	1 cut(s)	932
BmrFI	CCNGG	3 cut(s)	203, 693, 935
BpiI	GAAGAC	2 cut(s)	115, 801
BpmI	CTGGAG	3 cut(s)	38, 714, 787
BpuMI	CCSGG	1 cut(s)	203
BsaHI	GRCGYC	1 cut(s)	931
Bsc4I	CCNNNNNNNGG	1 cut(s)	388
Bse1I	ACTGG	2 cut(s)	493, 770
Bse3DI	GCAATG	1 cut(s)	34
BseBI	CCWGG	2 cut(s)	693, 935
BseGI	GGATG	2 cut(s)	10, 378
BseLI	CCNNNNNNNGG	1 cut(s)	388
BseMI	GCAATG	1 cut(s)	34
BseNI	ACTGG	2 cut(s)	493, 770
BseRI	GAGGAG	1 cut(s)	784
BseXI	GCAGC	1 cut(s)	613
BsgI	GTGCAG	1 cut(s)	516
Bsh1236I	CGCG	2 cut(s)	347, 916
BshFI	GGCC	1 cut(s)	305
BshNI	GGYRCC	1 cut(s)	930
BsiHKAI	GWGCWC	1 cut(s)	638
BsiSI	CCGG	2 cut(s)	203, 734
BslI	CCNNNNNNNGG	1 cut(s)	388
BsmAI	GTCTC	2 cut(s)	656, 691
BsmI	GAATGC	2 cut(s)	240, 677
BsnI	GGCC	1 cut(s)	305
Bsp1286I	GDGCHC	1 cut(s)	638
Bsp143I	GATC	4 cut(s)	135, 277, 373, 579
BspANI	GGCC	1 cut(s)	305
BspFNI	CGCG	2 cut(s)	347, 916
BspLI	GGNNCC	1 cut(s)	932
BspMAI	CTGCAG	2 cut(s)	89, 603
BspPI	GGATC	2 cut(s)	143, 285
BspQI	GCTCTTC	1 cut(s)	626
BspT107I	GGYRCC	1 cut(s)	930
BsrDI	GCAATG	1 cut(s)	34
BsrI	ACTGG	2 cut(s)	493, 770
BssMI	GATC	4 cut(s)	135, 277, 373, 579
BssNI	GRCGYC	1 cut(s)	931
Bst2UI	CCWGG	2 cut(s)	693, 935
Bst4CI	ACNGT	3 cut(s)	326, 416, 791
Bst6I	CTCTTC	2 cut(s)	294, 626
BstACI	GRCGYC	1 cut(s)	931
BstC8I	GCNNGC	1 cut(s)	484
BstDEI	CTNAG	1 cut(s)	269
BstF5I	GGATG	2 cut(s)	10, 378
BstFNI	CGCG	2 cut(s)	347, 916
BstH2I	RGCGCY	2 cut(s)	522, 934
BstHHI	GCGC	3 cut(s)	347, 521, 933
BstKTI	GATC	4 cut(s)	138, 280, 376, 582
BstMAI	GTCTC	2 cut(s)	656, 691
BstMBI	GATC	4 cut(s)	135, 277, 373, 579
BstMWI	GCNNNNNNNGC	1 cut(s)	570
BstNI	CCWGG	2 cut(s)	693, 935
BstSCI	CCNGG	3 cut(s)	201, 691, 933
BstSFI	CTRYAG	2 cut(s)	85, 599
BstUI	CGCG	2 cut(s)	347, 916
BstV1I	GCAGC	1 cut(s)	613
BstV2I	GAAGAC	2 cut(s)	115, 801
BsuI	GTATCC	1 cut(s)	199
BsuRI	GGCC	1 cut(s)	305
BtgZI	GCGATG	1 cut(s)	463
BtsCI	GGATG	2 cut(s)	10, 378
BtsIMutI	CAGTG	2 cut(s)	484, 486
Cac8I	GCNNGC	1 cut(s)	484
CfoI	GCGC	3 cut(s)	347, 521, 933
Cfr13I	GGNCC	1 cut(s)	892
Csp6I	GTAC	5 cut(s)	658, 718, 751, 763, 897
CviAII	CATG	3 cut(s)	47, 457, 810
CviJI	RGCY	5 cut(s)	82, 201, 305, 604, 733
CviKI_1	RGCY	5 cut(s)	82, 201, 305, 604, 733
CviQI	GTAC	5 cut(s)	658, 718, 751, 763, 897
DdeI	CTNAG	1 cut(s)	269
DinI	GGCGCC	1 cut(s)	932
DpnI	GATC	4 cut(s)	137, 279, 375, 581
DpnII	GATC	4 cut(s)	135, 277, 373, 579
DraIII	CACNNNGTG	1 cut(s)	561
Eam1104I	CTCTTC	2 cut(s)	294, 626
EarI	CTCTTC	2 cut(s)	294, 626
Eco32I	GATATC	1 cut(s)	475
Eco47I	GGWCC	1 cut(s)	892
Eco57I	CTGAAG	2 cut(s)	270, 318
EcoRII	CCWGG	2 cut(s)	691, 933
EcoRV	GATATC	1 cut(s)	475
EgeI	GGCGCC	1 cut(s)	932
EheI	GGCGCC	1 cut(s)	932
FaeI	CATG	3 cut(s)	50, 460, 813
FatI	CATG	3 cut(s)	46, 456, 809
Fnu4HI	GCNGC	1 cut(s)	602
FokI	GGATG	2 cut(s)	17, 365
Fsp4HI	GCNGC	1 cut(s)	602
FspBI	CTAG	1 cut(s)	237
GlaI	GCGC	3 cut(s)	346, 520, 932
GluI	GCNGC	1 cut(s)	602
GsuI	CTGGAG	3 cut(s)	38, 714, 787
HaeII	RGCGCY	2 cut(s)	522, 934
HaeIII	GGCC	1 cut(s)	305
HapII	CCGG	2 cut(s)	203, 734
HhaI	GCGC	3 cut(s)	347, 521, 933
Hin1I	GRCGYC	1 cut(s)	931
Hin1II	CATG	3 cut(s)	50, 460, 813
Hin6I	GCGC	3 cut(s)	345, 519, 931
HinP1I	GCGC	3 cut(s)	345, 519, 931
HincII	GTYRAC	1 cut(s)	336
HindII	GTYRAC	1 cut(s)	336
HinfI	GANTC	5 cut(s)	43, 120, 158, 428, 467
HpaII	CCGG	2 cut(s)	203, 734
HphI	GGTGA	2 cut(s)	44, 803
Hpy166II	GTNNAC	2 cut(s)	336, 550
Hpy188I	TCNGA	5 cut(s)	177, 250, 298, 472, 848
Hpy188III	TCNNGA	2 cut(s)	55, 925
Hpy8I	GTNNAC	2 cut(s)	336, 550
Hpy99I	CGWCG	1 cut(s)	425
HpyAV	CCTTC	4 cut(s)	108, 245, 267, 493
HpyCH4III	ACNGT	3 cut(s)	326, 416, 791
HpyCH4IV	ACGT	2 cut(s)	552, 638
HpyCH4V	TGCA	5 cut(s)	87, 486, 533, 601, 647
HpyF10VI	GCNNNNNNNGC	1 cut(s)	570
HpyF3I	CTNAG	1 cut(s)	269
HpySE526I	ACGT	2 cut(s)	552, 638
Hsp92I	GRCGYC	1 cut(s)	931
Hsp92II	CATG	3 cut(s)	50, 460, 813
HspAI	GCGC	3 cut(s)	345, 519, 931
KasI	GGCGCC	1 cut(s)	930
Kzo9I	GATC	4 cut(s)	135, 277, 373, 579
LguI	GCTCTTC	1 cut(s)	626
LmnI	GCTCC	2 cut(s)	342, 453
Lsp1109I	GCAGC	1 cut(s)	613
MaeI	CTAG	1 cut(s)	237
MaeII	ACGT	2 cut(s)	552, 638
MaeIII	GTNAC	2 cut(s)	140, 553
MalI	GATC	4 cut(s)	137, 279, 375, 581
MboI	GATC	4 cut(s)	135, 277, 373, 579
MboII	GAAGA	5 cut(s)	115, 252, 311, 643, 806
MhlI	GDGCHC	1 cut(s)	638
MluCI	AATT	3 cut(s)	92, 460, 524
Mly113I	GGCGCC	1 cut(s)	931
MlyI	GAGTC	1 cut(s)	129
MseI	TTAA	4 cut(s)	147, 197, 527, 587
MslI	CAYNNNNRTG	2 cut(s)	311, 513
MspI	CCGG	2 cut(s)	203, 734
MspR9I	CCNGG	3 cut(s)	203, 693, 935
Mva1269I	GAATGC	2 cut(s)	240, 677
MvaI	CCWGG	2 cut(s)	693, 935
MvnI	CGCG	2 cut(s)	347, 916
MwoI	GCNNNNNNNGC	1 cut(s)	570
NarI	GGCGCC	1 cut(s)	931
NciI	CCSGG	1 cut(s)	203
NdeII	GATC	4 cut(s)	135, 277, 373, 579
NlaIII	CATG	3 cut(s)	50, 460, 813
NlaIV	GGNNCC	1 cut(s)	932
NmuCI	GTSAC	1 cut(s)	553
OliI	CACNNNNGTG	1 cut(s)	311
PciSI	GCTCTTC	1 cut(s)	626
PcsI	WCGNNNNNNNCGW	2 cut(s)	666, 852
PctI	GAATGC	2 cut(s)	240, 677
PfeI	GAWTC	4 cut(s)	43, 158, 428, 467
PfoI	TCCNGGA	1 cut(s)	691
PkrI	GCNGC	1 cut(s)	603
PleI	GAGTC	1 cut(s)	128
PluTI	GGCGCC	1 cut(s)	934
PpsI	GAGTC	1 cut(s)	128
PsiI	TTATAA	1 cut(s)	62
Psp6I	CCWGG	2 cut(s)	691, 933
PspGI	CCWGG	2 cut(s)	691, 933
PspN4I	GGNNCC	1 cut(s)	932
PspPI	GGNCC	1 cut(s)	892
PstI	CTGCAG	2 cut(s)	89, 603
RsaI	GTAC	5 cut(s)	659, 719, 752, 764, 898
RsaNI	GTAC	5 cut(s)	658, 718, 751, 763, 897
RseI	CAYNNNNRTG	2 cut(s)	311, 513
SapI	GCTCTTC	1 cut(s)	626
SaqAI	TTAA	4 cut(s)	147, 197, 527, 587
SatI	GCNGC	1 cut(s)	602
Sau3AI	GATC	4 cut(s)	135, 277, 373, 579
Sau96I	GGNCC	1 cut(s)	892
SchI	GAGTC	1 cut(s)	129
ScrFI	CCNGG	3 cut(s)	203, 693, 935
SduI	GDGCHC	1 cut(s)	638
SetI	ASST	9 cut(s)	100, 153, 256, 335, 360, 555, 606, 641, 711
SfcI	CTRYAG	2 cut(s)	85, 599
SfoI	GGCGCC	1 cut(s)	932
SinI	GGWCC	1 cut(s)	892
SmiMI	CAYNNNNRTG	2 cut(s)	311, 513
Sse9I	AATT	3 cut(s)	92, 460, 524
SspDI	GGCGCC	1 cut(s)	930
SspMI	CTAG	1 cut(s)	237
StyD4I	CCNGG	3 cut(s)	201, 691, 933
TaaI	ACNGT	3 cut(s)	326, 416, 791
TaiI	ACGT	2 cut(s)	555, 641
TaqI	TCGA	1 cut(s)	161
TasI	AATT	3 cut(s)	92, 460, 524
TatI	WGTACW	3 cut(s)	717, 750, 762
TfiI	GAWTC	4 cut(s)	43, 158, 428, 467
Tru1I	TTAA	4 cut(s)	147, 197, 527, 587
Tru9I	TTAA	4 cut(s)	147, 197, 527, 587
TscAI	CASTG	2 cut(s)	484, 493
TseFI	GTSAC	1 cut(s)	553
TseI	GCWGC	1 cut(s)	601
Tsp45I	GTSAC	1 cut(s)	553
TspDTI	ATGAA	4 cut(s)	30, 90, 473, 596
TspGWI	ACGGA	3 cut(s)	791, 813, 884
TspRI	CASTG	2 cut(s)	484, 493
VpaK11BI	GGWCC	1 cut(s)	892
XspI	CTAG	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.