Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001242

Physical Location & Seq

Genomic Coordinates Forward (+)

8245793 .. 8247738

Gene Structure 1946 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011286

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGATGTTCCTTATGAAACAACACCAAGCAATGGTGAAGTGGCCAATCACGGCCTTCAGATTATTAGATACTCTCCTTACCAGCACAACAGCAAATTATCATCACCCTGGTTTGATCTTAGAGTCTTCTATGTAAGGATCAGCAACTTTATGGTGGATGAATCTACCCCCAAGTTTCTGACCCTCATCCATATTCCTCTAAGCCCAGATACCCTTTTGGAAGTAAACGGTGCAAAAACTAGCATGTACTCTGATGGTGTATCTTCACATCTTAGAAGGGATCGGGTGGACAAGAAATCCGAAGAAGTCACATTTGTGAATACAGACAGCATAAGGTTCACAGGGAGTGTGAAATTTGAGGTGTTTGATAAAGATGATCTTATTCTCTCCGGGGTGTTAGATATGTCTAATAGCAATGGTTTCGTTGGGGAATCAAAGAACAATGCCAAGCGATGGAGCATGAATTGTGAATCGGAGATCACTGCTGGCACTGGATTTTTCAAGGGAAAACAACTTAATGGCACTGAATCACCTGCACCGAGCATTGAGGTTTACGTTGCTGGCTCCTTCTCTGGAACACCAATCATCTTAACCAAGACACTGCAGATTAGTTTCCGAAAGAAGCACAATAGGAAGAGCACTCTGGATGCAATTCCGGAGTATGAAGCAACTGAATTGCAGAAAGATGAGTCTCCTGAACTTGATATGGAGGTGGCAGAATATAGAAACTACAAACCAGAAAATGAGGAAGAGTATGGGATGTACTGGAGGAGGACAGAATACATGGATGGTGAAGATGGTGAGCTCTCATGGTTCAATGCTGGTGTGAGAGTTGGCGTTGGAATTGGACTTGGCATTTGTCTTGGAGTTGGGATAGGGGTTGGTTTGCTGGTTCGTACATATCAAACAACCACTCGGACTTTCAAGAGGCGACTGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

314

Amino Acids

35.27

Weight (kDa)

5.43

Isoelectric Point (pI)

47.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19400 AT1G19400 AT1G19400 AT1G19400 AT1G75180 AT1G75180 AT1G75180 AT1G75180
fragaria_vesca	FvH4_2g08760 FvH4_2g39840 FvH4_2g39840 FvH4_2g39840
malus_domestica	MD08G1032000.v1.1 MD10G1076500.v1.1 MD15G1028000.v1.1
prunus_persica	Prupe.1G379700_v2.0.a1 Prupe.1G379700_v2.0.a1 Prupe.1G379700_v2.0.a1 Prupe.1G379700_v2.0.a1 Prupe.8G097300_v2.0.a1 Prupe.8G097300_v2.0.a1 Prupe.8G097300_v2.0.a1 Prupe.8G097300_v2.0.a1
pyrus_communis	pycom08g02530 pycom15g02400
rosa_chinensis	RchiOBHm_Chr6g0264221 RchiOBHm_Chr6g0301001
rosa_laevigata	RLG00000011286 RLG00000014279
rosa_multiflora	Rmu_co8302127.1_g000001 Rmu_sc0003168.1_g000005 Rmu_sc0005114.1_g000014
rosa_roxburghii	Rroxscaffold_176G00431620 Rroxscaffold_7G00167270 Rroxscaffold_7G00203390
rosa_rugosa	Rorug06G0010200 Rorug06G0010300 Rorug06G0010400 Rorug06G0010500.1 Rorug06G0010600 Rorug06G0010600 Rorug06G0010700 Rorug06G0010800 Rorug06G0010900 Rorug06G0011000 Rorug06G0299900
rosa_samantha	Rh6AG130300 Rh6AG413800 Rh6BG127600 Rh6BG420700 Rh6CG126200 Rh6CG428300 Rh6DG112900 Rh6DG413700
rosa_wichuraiana	Rw6G011350 Rw6G011410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	541
Acc36I	ACCTGC	1 cut(s)	541
AccB7I	CCANNNNNTGG	2 cut(s)	32, 453
AccIII	TCCGGA	1 cut(s)	655
AclWI	GGATC	2 cut(s)	146, 288
AcoI	YGGCCR	1 cut(s)	42
AcsI	RAATTY	1 cut(s)	353
AcuI	CTGAAG	1 cut(s)	41
AfaI	GTAC	3 cut(s)	248, 764, 898
AfiI	CCNNNNNNNGG	2 cut(s)	32, 453
AgsI	TTSAA	3 cut(s)	502, 817, 925
AjnI	CCWGG	1 cut(s)	107
AleI	CACNNNNGTG	1 cut(s)	314
AluBI	AGCT	1 cut(s)	805
AluI	AGCT	1 cut(s)	805
Alw21I	GWGCWC	2 cut(s)	641, 807
Alw26I	GTCTC	1 cut(s)	696
AlwI	GGATC	2 cut(s)	146, 288
Aor13HI	TCCGGA	1 cut(s)	655
AoxI	GGCC	2 cut(s)	42, 52
ApoI	RAATTY	1 cut(s)	353
ArsI	GACNNNNNNTTYG	2 cut(s)	840, 872
AsuC2I	CCSGG	1 cut(s)	391
AsuHPI	GGTGA	5 cut(s)	47, 96, 522, 803, 812
BalI	TGGCCA	1 cut(s)	44
BanII	GRGCYC	1 cut(s)	807
BbsI	GAAGAC	1 cut(s)	118
Bbv12I	GWGCWC	2 cut(s)	641, 807
BccI	CCATC	4 cut(s)	248, 447, 782, 791
BceAI	ACGGC	1 cut(s)	67
BcgI	CGANNNNNNTGC	2 cut(s)	403, 437
BciT130I	CCWGG	1 cut(s)	109
BcnI	CCSGG	1 cut(s)	391
BcoDI	GTCTC	1 cut(s)	696
BfaI	CTAG	1 cut(s)	240
BfmI	CTRYAG	1 cut(s)	602
BfuAI	ACCTGC	1 cut(s)	541
Bme1390I	CCNGG	2 cut(s)	109, 391
BmiI	GGNNCC	1 cut(s)	565
BmrFI	CCNGG	2 cut(s)	109, 391
BmsI	GCATC	1 cut(s)	637
BpiI	GAAGAC	1 cut(s)	118
BpmI	CTGGAG	1 cut(s)	787
BpuMI	CCSGG	1 cut(s)	391
BsaJI	CCNNGG	2 cut(s)	107, 390
BsaWI	WCCGGW	1 cut(s)	655
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 453
Bse1I	ACTGG	3 cut(s)	496, 770, 939
Bse3DI	GCAATG	2 cut(s)	37, 421
BseAI	TCCGGA	1 cut(s)	655
BseBI	CCWGG	1 cut(s)	109
BseDI	CCNNGG	2 cut(s)	107, 390
BseGI	GGATG	6 cut(s)	10, 163, 186, 652, 765, 793
BseLI	CCNNNNNNNGG	2 cut(s)	32, 453
BseMI	GCAATG	2 cut(s)	37, 421
BseNI	ACTGG	3 cut(s)	496, 770, 939
BseRI	GAGGAG	1 cut(s)	784
BsgI	GTGCAG	1 cut(s)	519
BshFI	GGCC	2 cut(s)	44, 54
BsiHKAI	GWGCWC	2 cut(s)	641, 807
BsiSI	CCGG	2 cut(s)	390, 656
BslI	CCNNNNNNNGG	2 cut(s)	32, 453
BsmAI	GTCTC	1 cut(s)	696
BsnI	GGCC	2 cut(s)	44, 54
Bsp1286I	GDGCHC	2 cut(s)	641, 807
Bsp13I	TCCGGA	1 cut(s)	655
Bsp143I	GATC	5 cut(s)	115, 138, 280, 376, 477
BspANI	GGCC	2 cut(s)	44, 54
BspEI	TCCGGA	1 cut(s)	655
BspLI	GGNNCC	1 cut(s)	565
BspMAI	CTGCAG	1 cut(s)	606
BspMI	ACCTGC	1 cut(s)	541
BspPI	GGATC	2 cut(s)	146, 288
BspQI	GCTCTTC	1 cut(s)	629
BsrDI	GCAATG	2 cut(s)	37, 421
BsrI	ACTGG	3 cut(s)	496, 770, 939
BssECI	CCNNGG	2 cut(s)	107, 390
BssMI	GATC	5 cut(s)	115, 138, 280, 376, 477
Bst2UI	CCWGG	1 cut(s)	109
Bst4CI	ACNGT	1 cut(s)	230
Bst6I	CTCTTC	2 cut(s)	629, 744
BstC8I	GCNNGC	2 cut(s)	487, 562
BstDEI	CTNAG	3 cut(s)	119, 200, 272
BstF5I	GGATG	6 cut(s)	10, 163, 186, 652, 765, 793
BstKTI	GATC	5 cut(s)	118, 141, 283, 379, 480
BstMAI	GTCTC	1 cut(s)	696
BstMBI	GATC	5 cut(s)	115, 138, 280, 376, 477
BstNI	CCWGG	1 cut(s)	109
BstNSI	RCATGY	1 cut(s)	247
BstSCI	CCNGG	2 cut(s)	107, 389
BstSFI	CTRYAG	1 cut(s)	602
BstV2I	GAAGAC	1 cut(s)	118
BsuRI	GGCC	2 cut(s)	44, 54
BtgZI	GCGATG	1 cut(s)	466
BtsCI	GGATG	6 cut(s)	10, 163, 186, 652, 765, 793
BtsI	GCAGTG	2 cut(s)	480, 599
BtsIMutI	CAGTG	4 cut(s)	480, 489, 522, 599
BveI	ACCTGC	1 cut(s)	541
Cac8I	GCNNGC	2 cut(s)	487, 562
Csp6I	GTAC	3 cut(s)	247, 763, 897
CviAII	CATG	4 cut(s)	244, 460, 784, 810
CviJI	RGCY	5 cut(s)	44, 54, 204, 564, 805
CviKI_1	RGCY	5 cut(s)	44, 54, 204, 564, 805
CviQI	GTAC	3 cut(s)	247, 763, 897
DdeI	CTNAG	3 cut(s)	119, 200, 272
DpnI	GATC	5 cut(s)	117, 140, 282, 378, 479
DpnII	GATC	5 cut(s)	115, 138, 280, 376, 477
EaeI	YGGCCR	1 cut(s)	42
Eam1104I	CTCTTC	2 cut(s)	629, 744
EarI	CTCTTC	2 cut(s)	629, 744
Ecl136II	GAGCTC	1 cut(s)	805
Eco24I	GRGCYC	1 cut(s)	807
Eco53kI	GAGCTC	1 cut(s)	805
Eco57I	CTGAAG	1 cut(s)	41
EcoICRI	GAGCTC	1 cut(s)	805
EcoRII	CCWGG	1 cut(s)	107
EcoT38I	GRGCYC	1 cut(s)	807
FaeI	CATG	4 cut(s)	247, 463, 787, 813
FalI	AAGNNNNNCTT	2 cut(s)	363, 395
FatI	CATG	4 cut(s)	243, 459, 783, 809
FokI	GGATG	6 cut(s)	17, 170, 173, 659, 772, 800
FriOI	GRGCYC	1 cut(s)	807
FspBI	CTAG	1 cut(s)	240
GsuI	CTGGAG	1 cut(s)	787
HaeIII	GGCC	2 cut(s)	44, 54
HapII	CCGG	2 cut(s)	390, 656
Hin1II	CATG	4 cut(s)	247, 463, 787, 813
HinfI	GANTC	6 cut(s)	123, 161, 431, 470, 527, 689
HpaII	CCGG	2 cut(s)	390, 656
HphI	GGTGA	5 cut(s)	47, 96, 522, 803, 812
Hpy166II	GTNNAC	4 cut(s)	226, 289, 339, 553
Hpy188I	TCNGA	7 cut(s)	60, 180, 253, 301, 475, 617, 918
Hpy188III	TCNNGA	5 cut(s)	573, 644, 656, 695, 925
Hpy8I	GTNNAC	4 cut(s)	226, 289, 339, 553
HpyAV	CCTTC	3 cut(s)	65, 270, 577
HpyCH4III	ACNGT	1 cut(s)	230
HpyCH4IV	ACGT	1 cut(s)	555
HpyCH4V	TGCA	5 cut(s)	233, 536, 604, 650, 679
HpyF3I	CTNAG	3 cut(s)	119, 200, 272
HpySE526I	ACGT	1 cut(s)	555
Hsp92II	CATG	4 cut(s)	247, 463, 787, 813
Kpn2I	TCCGGA	1 cut(s)	655
Kzo9I	GATC	5 cut(s)	115, 138, 280, 376, 477
LguI	GCTCTTC	1 cut(s)	629
LmnI	GCTCC	2 cut(s)	456, 569
LweI	GCATC	1 cut(s)	637
MaeI	CTAG	1 cut(s)	240
MaeII	ACGT	1 cut(s)	555
MaeIII	GTNAC	1 cut(s)	307
MalI	GATC	5 cut(s)	117, 140, 282, 378, 479
MboI	GATC	5 cut(s)	115, 138, 280, 376, 477
MboII	GAAGA	6 cut(s)	118, 255, 314, 646, 761, 806
MhlI	GDGCHC	2 cut(s)	641, 807
MlsI	TGGCCA	1 cut(s)	44
MluCI	AATT	6 cut(s)	95, 353, 463, 651, 674, 843
MluNI	TGGCCA	1 cut(s)	44
MlyI	GAGTC	2 cut(s)	132, 698
MmeI	TCCRAC	1 cut(s)	820
MnlI	CCTC	9 cut(s)	194, 207, 352, 541, 703, 739, 762, 765, 921
Mox20I	TGGCCA	1 cut(s)	44
MroI	TCCGGA	1 cut(s)	655
MscI	TGGCCA	1 cut(s)	44
MseI	TTAA	2 cut(s)	516, 590
MslI	CAYNNNNRTG	1 cut(s)	314
Msp20I	TGGCCA	1 cut(s)	44
MspI	CCGG	2 cut(s)	390, 656
MspR9I	CCNGG	2 cut(s)	109, 391
MvaI	CCWGG	1 cut(s)	109
NciI	CCSGG	1 cut(s)	391
NdeII	GATC	5 cut(s)	115, 138, 280, 376, 477
NlaIII	CATG	4 cut(s)	247, 463, 787, 813
NlaIV	GGNNCC	1 cut(s)	565
NmuCI	GTSAC	1 cut(s)	307
NspI	RCATGY	1 cut(s)	247
OliI	CACNNNNGTG	1 cut(s)	314
PaqCI	CACCTGC	1 cut(s)	541
PciSI	GCTCTTC	1 cut(s)	629
PfeI	GAWTC	4 cut(s)	161, 431, 470, 527
PflMI	CCANNNNNTGG	2 cut(s)	32, 453
PleI	GAGTC	2 cut(s)	131, 697
PpsI	GAGTC	2 cut(s)	131, 697
Psp124BI	GAGCTC	1 cut(s)	807
Psp6I	CCWGG	1 cut(s)	107
PspGI	CCWGG	1 cut(s)	107
PspN4I	GGNNCC	1 cut(s)	565
PstI	CTGCAG	1 cut(s)	606
RsaI	GTAC	3 cut(s)	248, 764, 898
RsaNI	GTAC	3 cut(s)	247, 763, 897
RseI	CAYNNNNRTG	1 cut(s)	314
SacI	GAGCTC	1 cut(s)	807
SapI	GCTCTTC	1 cut(s)	629
SaqAI	TTAA	2 cut(s)	516, 590
Sau3AI	GATC	5 cut(s)	115, 138, 280, 376, 477
SchI	GAGTC	2 cut(s)	132, 698
ScrFI	CCNGG	2 cut(s)	109, 391
SduI	GDGCHC	2 cut(s)	641, 807
SetI	ASST	7 cut(s)	338, 363, 535, 552, 558, 714, 807
SfaNI	GCATC	1 cut(s)	637
SfcI	CTRYAG	1 cut(s)	602
SmiMI	CAYNNNNRTG	1 cut(s)	314
Sse9I	AATT	6 cut(s)	95, 353, 463, 651, 674, 843
SspMI	CTAG	1 cut(s)	240
SstI	GAGCTC	1 cut(s)	807
StyD4I	CCNGG	2 cut(s)	107, 389
TaaI	ACNGT	1 cut(s)	230
TaiI	ACGT	1 cut(s)	558
TasI	AATT	6 cut(s)	95, 353, 463, 651, 674, 843
TatI	WGTACW	2 cut(s)	246, 762
TfiI	GAWTC	4 cut(s)	161, 431, 470, 527
Tru1I	TTAA	2 cut(s)	516, 590
Tru9I	TTAA	2 cut(s)	516, 590
TscAI	CASTG	4 cut(s)	487, 496, 529, 606
TseFI	GTSAC	1 cut(s)	307
Tsp45I	GTSAC	1 cut(s)	307
TspDTI	ATGAA	4 cut(s)	30, 174, 476, 678
TspRI	CASTG	4 cut(s)	487, 496, 529, 606
Van91I	CCANNNNNTGG	2 cut(s)	32, 453
XapI	RAATTY	1 cut(s)	353
XceI	RCATGY	1 cut(s)	247
XspI	CTAG	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.