Rorug06G0010900

At1g01500-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0001242
Physical Location & Seq
Forward (+)
1530792 .. 1536257
5466 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0010900.1

Sequence Viewer

Length: 996 bp
ATGCGCACCCTCTTCCTCACTCTGAGGCCACCACCACCATCTCCGCCGTGCCTCTCTCCCTTCTCCTCCTCCCACCCTTCTTCCCTCTTCAAACCCAACCACCACCGCTTCCACTTCCTCTCGCCATGCTCCTCTCTCAAGCAGACCAAGAACAAGACCAGCCGCCTCCAGAAGACCGCCACTGCTCCGCCGCAGAGCCTCAAGTGGCTCTTCAATAATCCCAAGATTGACGACGGCGGCGAGATTGAAAAGGGTAGCGGCGGCGGTGGCGGTGATGATGAGGGCGAGGGTGGGTTGGCGCTTAAAGGTACTGTCTTGGCGGGGCTGCTCTTGGTTGGGCTTGTTGGTGGGTTTGGGGCGGCTGGGTATGTGTACAAGGATCAGGTTAAGGCCTTCTTGAATCAGTTTACGACTCTCATTGAAGGGTATGGTCCAGCGGGATATGCTTTGTTTGTAGCAGTTTATGCAGGACTGGAAATTCTTGCGATTCCAGCTGTTCCATTGACCATGTCAGCTGGTCTTCTTTTTGGCACAGTTACTGGATCAATTCTAGTCTCTCTAAGCGGAACGGTGGCTGCTAGCGTTGCTTTTCTGATTGCTAGATATTTTGCTCGTGAGCGTATTCTTAAAATGGTTGAGGGAAACAAAAAATTTCTTGCAATTGATAAGGCTATTGGAGAAAATGGCTTCAGAGTTGTTACCCTCCTCCGTTTGAGCCCTTTGCTTCCTTTTTCTCTGGGGAACTATTTATATGGATTGACATCTGTAAAGTTTGTCCCATATGTGTTGGGAAGTTGGTTGGGGATGCTTCCAGGAACATGGGCTTATGTGAGTGCTGGTGCATTTGGGCGAGCCATAATTCAAGAGGAATCTGATGTTGGTTTGCCCGGCGGAAATGGTCAGCTGTTGACACTAGCAGCTGGACTGTTAGTCACAGCATTAGCTGCTGCTTATGTAACACGATTAGCAAAGGATGCTGTAAAAGATATCGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

331

Amino Acids

34.85

Weight (kDa)

9.38

Isoelectric Point (pI)

36.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VTT_dom PF09335 163 - 281 1.8e-23 VTT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 5
AclWI GGATC 2 cut(s) 387, 550
AcsI RAATTY 2 cut(s) 477, 650
AcuI CTGAAG 1 cut(s) 673
AfaI GTAC 2 cut(s) 310, 374
AgsI TTSAA 6 cut(s) 91, 214, 248, 400, 422, 863
AhdI GACNNNNNGTC 1 cut(s) 929
AjnI CCWGG 1 cut(s) 811
AjuI GAANNNNNNNTTGG 2 cut(s) 861, 893
AluBI AGCT 5 cut(s) 494, 515, 904, 920, 944
AluI AGCT 5 cut(s) 494, 515, 904, 920, 944
Alw26I GTCTC 1 cut(s) 559
AlwI GGATC 2 cut(s) 387, 550
AlwNI CAGNNNCTG 1 cut(s) 539
AoxI GGCC 2 cut(s) 26, 390
ApeKI GCWGC 5 cut(s) 325, 575, 917, 944, 947
ApoI RAATTY 2 cut(s) 477, 650
AspLEI GCGC 2 cut(s) 6, 301
AspS9I GGNCC 1 cut(s) 431
AsuC2I CCSGG 1 cut(s) 888
AsuHPI GGTGA 1 cut(s) 284
AsuNHI GCTAGC 1 cut(s) 578
AvaII GGWCC 1 cut(s) 431
BanII GRGCYC 1 cut(s) 719
BauI CACGAG 1 cut(s) 612
BbsI GAAGAC 2 cut(s) 179, 512
BbvI GCAGC 5 cut(s) 312, 562, 929, 931, 934
BccI CCATC 1 cut(s) 46
BceAI ACGGC 2 cut(s) 31, 250
BciT130I CCWGG 1 cut(s) 813
BcnI CCSGG 1 cut(s) 888
BcoDI GTCTC 1 cut(s) 559
BfaI CTAG 4 cut(s) 551, 579, 600, 914
BfoI RGCGCY 1 cut(s) 302
Bme1390I CCNGG 2 cut(s) 813, 888
Bme18I GGWCC 1 cut(s) 431
BmeRI GACNNNNNGTC 1 cut(s) 929
BmgT120I GGNCC 1 cut(s) 431
BmrFI CCNGG 2 cut(s) 813, 888
BmsI GCATC 2 cut(s) 795, 964
BmtI GCTAGC 1 cut(s) 582
BpiI GAAGAC 2 cut(s) 179, 512
BpmI CTGGAG 1 cut(s) 152
BpuEI CTTGAG 2 cut(s) 122, 185
BpuMI CCSGG 1 cut(s) 888
Bsa29I ATCGAT 1 cut(s) 990
BsaBI GATNNNNATC 1 cut(s) 760
Bse1I ACTGG 2 cut(s) 477, 544
Bse8I GATNNNNATC 1 cut(s) 760
BseBI CCWGG 1 cut(s) 813
BseCI ATCGAT 1 cut(s) 990
BseGI GGATG 2 cut(s) 810, 979
BseJI GATNNNNATC 1 cut(s) 760
BseMII CTCAG 1 cut(s) 14
BseNI ACTGG 2 cut(s) 477, 544
BseRI GAGGAG 4 cut(s) 55, 58, 121, 695
BseXI GCAGC 5 cut(s) 312, 562, 929, 931, 934
BseYI CCCAGC 1 cut(s) 362
BshFI GGCC 2 cut(s) 28, 392
BshVI ATCGAT 1 cut(s) 990
BsiSI CCGG 1 cut(s) 888
BslFI GGGAC 1 cut(s) 761
BsmAI GTCTC 1 cut(s) 559
BsmFI GGGAC 1 cut(s) 761
BsnI GGCC 2 cut(s) 28, 392
Bsp1286I GDGCHC 1 cut(s) 719
Bsp1407I TGTACA 1 cut(s) 372
Bsp143I GATC 2 cut(s) 379, 542
BspANI GGCC 2 cut(s) 28, 392
BspCNI CTCAG 1 cut(s) 15
BspDI ATCGAT 1 cut(s) 990
BspOI GCTAGC 1 cut(s) 582
BspPI GGATC 2 cut(s) 387, 550
BspQI GCTCTTC 1 cut(s) 215
BsrGI TGTACA 1 cut(s) 372
BsrI ACTGG 2 cut(s) 477, 544
BssMI GATC 2 cut(s) 379, 542
BssSI CACGAG 1 cut(s) 612
Bst2BI CACGAG 1 cut(s) 612
Bst2UI CCWGG 1 cut(s) 813
Bst4CI ACNGT 4 cut(s) 313, 535, 571, 927
Bst6I CTCTTC 3 cut(s) 17, 92, 215
BstAPI GCANNNNNTGC 3 cut(s) 464, 944, 974
BstAUI TGTACA 1 cut(s) 372
BstC8I GCNNGC 2 cut(s) 580, 852
BstDEI CTNAG 2 cut(s) 23, 560
BstF5I GGATG 2 cut(s) 810, 979
BstH2I RGCGCY 1 cut(s) 302
BstHHI GCGC 2 cut(s) 6, 301
BstKTI GATC 2 cut(s) 382, 545
BstMAI GTCTC 1 cut(s) 559
BstMBI GATC 2 cut(s) 379, 542
BstMWI GCNNNNNNNGC 7 cut(s) 267, 443, 464, 491, 584, 944, 974
BstNI CCWGG 1 cut(s) 813
BstSCI CCNGG 2 cut(s) 811, 886
BstV1I GCAGC 5 cut(s) 312, 562, 929, 931, 934
BstV2I GAAGAC 2 cut(s) 179, 512
BstXI CCANNNNNNTGG 1 cut(s) 819
Bsu15I ATCGAT 1 cut(s) 990
BsuRI GGCC 2 cut(s) 28, 392
BsuTUI ATCGAT 1 cut(s) 990
BtsCI GGATG 2 cut(s) 810, 979
BtsI GCAGTG 1 cut(s) 180
BtsIMutI CAGTG 1 cut(s) 180
Cac8I GCNNGC 2 cut(s) 580, 852
CaiI CAGNNNCTG 1 cut(s) 539
CfoI GCGC 2 cut(s) 6, 301
Cfr13I GGNCC 1 cut(s) 431
ClaI ATCGAT 1 cut(s) 990
Csp6I GTAC 2 cut(s) 309, 373
CviAII CATG 3 cut(s) 126, 508, 819
CviQI GTAC 2 cut(s) 309, 373
DdeI CTNAG 2 cut(s) 23, 560
DpnI GATC 2 cut(s) 381, 544
DpnII GATC 2 cut(s) 379, 542
DriI GACNNNNNGTC 1 cut(s) 929
Eam1104I CTCTTC 3 cut(s) 17, 92, 215
Eam1105I GACNNNNNGTC 1 cut(s) 929
EarI CTCTTC 3 cut(s) 17, 92, 215
EciI GGCGGA 3 cut(s) 33, 177, 906
Eco147I AGGCCT 1 cut(s) 392
Eco24I GRGCYC 1 cut(s) 719
Eco32I GATATC 1 cut(s) 988
Eco47I GGWCC 1 cut(s) 431
Eco57I CTGAAG 1 cut(s) 673
EcoRII CCWGG 1 cut(s) 811
EcoRV GATATC 1 cut(s) 988
EcoT38I GRGCYC 1 cut(s) 719
FaeI CATG 3 cut(s) 129, 511, 822
FalI AAGNNNNNCTT 4 cut(s) 194, 226, 380, 412
FaqI GGGAC 1 cut(s) 761
FatI CATG 3 cut(s) 125, 507, 818
FauI CCCGC 2 cut(s) 313, 430
FauNDI CATATG 1 cut(s) 781
FokI GGATG 2 cut(s) 817, 986
FriOI GRGCYC 1 cut(s) 719
FspAI RTGCGCAY 1 cut(s) 5
FspBI CTAG 4 cut(s) 551, 579, 600, 914
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 2 cut(s) 5, 300
GsaI CCCAGC 1 cut(s) 366
GsuI CTGGAG 1 cut(s) 152
HaeII RGCGCY 1 cut(s) 302
HaeIII GGCC 2 cut(s) 28, 392
HapII CCGG 1 cut(s) 888
HhaI GCGC 2 cut(s) 6, 301
Hin1II CATG 3 cut(s) 129, 511, 822
Hin6I GCGC 2 cut(s) 4, 299
HinP1I GCGC 2 cut(s) 4, 299
HincII GTYRAC 1 cut(s) 909
HindII GTYRAC 1 cut(s) 909
HinfI GANTC 4 cut(s) 400, 412, 487, 869
HpaII CCGG 1 cut(s) 888
HphI GGTGA 1 cut(s) 284
Hpy166II GTNNAC 3 cut(s) 373, 408, 909
Hpy188I TCNGA 4 cut(s) 24, 594, 692, 874
Hpy188III TCNNGA 4 cut(s) 169, 397, 614, 863
Hpy8I GTNNAC 3 cut(s) 373, 408, 909
Hpy99I CGWCG 1 cut(s) 236
HpyAV CCTTC 4 cut(s) 70, 87, 403, 416
HpyCH4III ACNGT 4 cut(s) 313, 535, 571, 927
HpyCH4V TGCA 3 cut(s) 467, 659, 842
HpyF10VI GCNNNNNNNGC 7 cut(s) 267, 443, 464, 491, 584, 944, 974
HpyF3I CTNAG 2 cut(s) 23, 560
Hsp92II CATG 3 cut(s) 129, 511, 822
HspAI GCGC 2 cut(s) 4, 299
Kzo9I GATC 2 cut(s) 379, 542
LguI GCTCTTC 1 cut(s) 215
LmnI GCTCC 2 cut(s) 134, 190
Lsp1109I GCAGC 5 cut(s) 312, 562, 929, 931, 934
LweI GCATC 2 cut(s) 795, 964
MaeI CTAG 4 cut(s) 551, 579, 600, 914
MaeIII GTNAC 4 cut(s) 535, 697, 931, 955
MalI GATC 2 cut(s) 381, 544
MboI GATC 2 cut(s) 379, 542
MboII GAAGA 6 cut(s) 4, 72, 79, 184, 202, 512
MfeI CAATTG 1 cut(s) 660
MhlI GDGCHC 1 cut(s) 719
MluCI AATT 5 cut(s) 477, 546, 650, 660, 858
MlyI GAGTC 1 cut(s) 406
MseI TTAA 3 cut(s) 303, 387, 627
MspA1I CMGCKG 5 cut(s) 437, 494, 515, 904, 920
MspI CCGG 1 cut(s) 888
MspR9I CCNGG 2 cut(s) 813, 888
MunI CAATTG 1 cut(s) 660
MvaI CCWGG 1 cut(s) 813
MwoI GCNNNNNNNGC 7 cut(s) 267, 443, 464, 491, 584, 944, 974
NciI CCSGG 1 cut(s) 888
NdeI CATATG 1 cut(s) 781
NdeII GATC 2 cut(s) 379, 542
NheI GCTAGC 1 cut(s) 578
NlaIII CATG 3 cut(s) 129, 511, 822
NmuCI GTSAC 1 cut(s) 931
NsbI TGCGCA 1 cut(s) 5
PceI AGGCCT 1 cut(s) 392
PciSI GCTCTTC 1 cut(s) 215
PcsI WCGNNNNNNNCGW 1 cut(s) 237
PfeI GAWTC 3 cut(s) 400, 487, 869
PflFI GACNNNGTC 1 cut(s) 508
PfoI TCCNGGA 1 cut(s) 811
PleI GAGTC 1 cut(s) 406
PpsI GAGTC 1 cut(s) 406
Psp6I CCWGG 1 cut(s) 811
PspFI CCCAGC 1 cut(s) 362
PspGI CCWGG 1 cut(s) 811
PspPI GGNCC 1 cut(s) 431
PstNI CAGNNNCTG 1 cut(s) 539
PsyI GACNNNGTC 1 cut(s) 508
PvuII CAGCTG 4 cut(s) 494, 515, 904, 920
RsaI GTAC 2 cut(s) 310, 374
RsaNI GTAC 2 cut(s) 309, 373
SapI GCTCTTC 1 cut(s) 215
SaqAI TTAA 3 cut(s) 303, 387, 627
Sau3AI GATC 2 cut(s) 379, 542
Sau96I GGNCC 1 cut(s) 431
SchI GAGTC 1 cut(s) 406
ScrFI CCNGG 2 cut(s) 813, 888
SduI GDGCHC 1 cut(s) 719
SetI ASST 7 cut(s) 310, 387, 496, 517, 906, 922, 946
SfaNI GCATC 2 cut(s) 795, 964
SinI GGWCC 1 cut(s) 431
SmlI CTYRAG 2 cut(s) 137, 200
SmoI CTYRAG 2 cut(s) 137, 200
Sse9I AATT 5 cut(s) 477, 546, 650, 660, 858
SseBI AGGCCT 1 cut(s) 392
SspMI CTAG 4 cut(s) 551, 579, 600, 914
StuI AGGCCT 1 cut(s) 392
StyD4I CCNGG 2 cut(s) 811, 886
TaaI ACNGT 4 cut(s) 313, 535, 571, 927
TaqI TCGA 1 cut(s) 990
TasI AATT 5 cut(s) 477, 546, 650, 660, 858
TatI WGTACW 1 cut(s) 372
TauI GCSGC 6 cut(s) 165, 193, 240, 261, 264, 362
TfiI GAWTC 3 cut(s) 400, 487, 869
Tru1I TTAA 3 cut(s) 303, 387, 627
Tru9I TTAA 3 cut(s) 303, 387, 627
TscAI CASTG 1 cut(s) 187
TseFI GTSAC 1 cut(s) 931
TseI GCWGC 5 cut(s) 325, 575, 917, 944, 947
Tsp45I GTSAC 1 cut(s) 931
TspGWI ACGGA 1 cut(s) 698
TspRI CASTG 1 cut(s) 187
Tth111I GACNNNGTC 1 cut(s) 508
VpaK11BI GGWCC 1 cut(s) 431
XapI RAATTY 2 cut(s) 477, 650
XspI CTAG 4 cut(s) 551, 579, 600, 914
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.