Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0003654

Physical Location & Seq

Genomic Coordinates Reverse (-)

72279428 .. 72283082

Gene Structure 3655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035826

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGTCGATCAATTCCAGAATGTTCATTCTTGCCGGGACGGGCTTTCGGGCAGGTGCCAAAGTAAATATGAGTGCTGGTGGAGCGATCCCTTTACACATCGCTGCTAACATTGAGAACTTGGAGATTATAAAATGTTTGTTAAAAGCTGGAGCTGATCCCAGTGTAACTGATGAGGTTCGTGGTACTTTTATGATGAACTTGGTATTCATAGCTTTCTATGCTTTCATGGCTATTTCAAATTCTCAAGCCGAAGGAACAAACACGAGTACTTCAGCGATTCTCATAACAGTTGACCAAGCGGGCAAAGGTGATTACAAGAAAATACAAGAAGCCATTGATTCAGTGGCGTCCAACAACGCAGAGCTCGTGTTTATTAGGGTTAAGCCCGGAGTATATGAAGAAAAAGTTATGGTTCCGGCGGACAAGCCGTTTATAACAATAAGTGGCACAAAGGCAGCTGACACGGTTATAACATGGAACGATAGTGGGGACATATTCGAGTCTCCAACTTTCTCTGTCCTGGCCTCAGATTTCATAGGGCGTTACCTCACAATTCAGAATACATATGGAGCTGGTGTGAAAGCGGTGGCATTACGGGTGTCTGGAGATAGAGCAGCATTCTATGGGTGCAGAATTTTGTCTCATCAAGACACCCTCCTTGATGATACTGGGAGGCACTACTACAACAACTGTTACATTGAAGGAGATAAGTGCCATTTGCATTCTCTTTCGGAAGGAACCGGGGCCATAACGGCCCAACGGAGAATGTCCCCGGCAGAGGACACCGGGTTCATGTTCTTCGGGTGCAAGATCACCGGTGTCAAAACAGCAGTGTTGGGAAGGCCTTGGGGTACATATTCAAGAGTAATCTTTGCCTTCACTTACATGACTAGCGCCATACTGCCACAAGGTTGGGACGATTGGGGAAACTCAGCCGACCAATTAAGAACCGTATACTATGGGCAGTATAAATGTTCTGGACGGGGAGCAACTACATCGAAACGAGTAGAATGGGCACGCGACCTTACGAGCGAAGAAGTCGAACCCTTCTTGACTAAGGACATGATTGATGCCAATGCTTGGTTAAGGTCAGCACCAACCACTTTCAAGAAGAAAGCACTCAGTGCCAATGACACCAAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Pectinesterase

Protein Analysis

382

Amino Acids

41.59

Weight (kDa)

6.95

Isoelectric Point (pI)

34.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank	PF00023	27 - 57	3.5e-06	Ankyrin repeat
Pectinesterase	PF01095	95 - 358	3.3e-55	Pectinesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003654)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21610 AT2G21610
fragaria_vesca	FvH4_2g39830 FvH4_3g36820 FvH4_3g36820
malus_domestica	MD08G1029800.v1.1 MD13G1062700.v1.1 MD15G1014700.v1.1 MD15G1025000.v1.1 MD15G1025100.v1.1 MD15G1025200.v1.1
prunus_persica	Prupe.1G377100_v2.0.a1 Prupe.1G377500_v2.0.a1 Prupe.1G377600_v2.0.a1
pyrus_communis	pycom15g02160
rosa_chinensis	RchiOBHm_Chr5g0065901 RchiOBHm_Chr6g0301011
rosa_laevigata	RLG00000011285 RLG00000035826
rosa_multiflora	Rmu_sc0003168.1_g000006 Rmu_sc0006634.1_g000003 Rmu_sc0024042.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015260 Rroxscaffold_7G00167260
rosa_rugosa	Rorug05G0375500 Rorug06G0299900
rosa_samantha	Rh5AG433500 Rh5BG449700 Rh5CG472300 Rh5DG463300 Rh6AG413900 Rh6BG420800 Rh6CG428400 Rh6DG413800
rosa_wichuraiana	Rw5G040630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	128, 434, 470
AarI	CACCTGC	1 cut(s)	41
Acc36I	ACCTGC	1 cut(s)	41
AccB1I	GGYRCC	1 cut(s)	53
AccB7I	CCANNNNNTGG	1 cut(s)	1080
AccI	GTMKAC	1 cut(s)	954
AccII	CGCG	1 cut(s)	1020
AciI	CCGC	3 cut(s)	299, 419, 584
AclWI	GGATC	2 cut(s)	79, 149
AcsI	RAATTY	2 cut(s)	238, 633
AcuI	CTGAAG	1 cut(s)	255
AcyI	GRCGYC	1 cut(s)	347
AdeI	CACNNNGTG	1 cut(s)	1124
AfaI	GTAC	3 cut(s)	184, 268, 853
AfiI	CCNNNNNNNGG	2 cut(s)	778, 1080
AgeI	ACCGGT	1 cut(s)	815
AgsI	TTSAA	4 cut(s)	237, 701, 861, 1108
AjnI	CCWGG	1 cut(s)	519
AloI	GAACNNNNNNTCC	2 cut(s)	773, 805
AluBI	AGCT	6 cut(s)	146, 152, 212, 364, 458, 572
AluI	AGCT	6 cut(s)	146, 152, 212, 364, 458, 572
Alw21I	GWGCWC	1 cut(s)	366
Alw26I	GTCTC	2 cut(s)	507, 645
AlwI	GGATC	2 cut(s)	79, 149
AoxI	GGCC	4 cut(s)	522, 744, 753, 842
ApeKI	GCWGC	3 cut(s)	101, 455, 614
ApoI	RAATTY	2 cut(s)	238, 633
AsiGI	ACCGGT	1 cut(s)	815
AspLEI	GCGC	1 cut(s)	896
AspS9I	GGNCC	2 cut(s)	744, 754
AsuC2I	CCSGG	5 cut(s)	34, 387, 742, 773, 787
AsuHPI	GGTGA	2 cut(s)	320, 805
BaeGI	GKGCMC	1 cut(s)	1018
BanI	GGYRCC	1 cut(s)	53
BanII	GRGCYC	1 cut(s)	366
BauI	CACGAG	2 cut(s)	262, 365
Bbv12I	GWGCWC	1 cut(s)	366
BbvI	GCAGC	3 cut(s)	88, 467, 626
BceAI	ACGGC	2 cut(s)	412, 768
BcgI	CGANNNNNNTGC	2 cut(s)	978, 1012
BciT130I	CCWGG	1 cut(s)	521
BcnI	CCSGG	5 cut(s)	34, 387, 742, 773, 787
BcoDI	GTCTC	2 cut(s)	507, 645
BfaI	CTAG	1 cut(s)	891
BfoI	RGCGCY	1 cut(s)	897
BfuAI	ACCTGC	1 cut(s)	41
BglI	GCCNNNNNGGC	1 cut(s)	752
BisI	GCNGC	3 cut(s)	102, 456, 615
BlsI	GCNGC	3 cut(s)	103, 457, 616
BmcAI	AGTACT	1 cut(s)	268
Bme1390I	CCNGG	6 cut(s)	34, 387, 521, 742, 773, 787
BmgT120I	GGNCC	2 cut(s)	744, 754
BmiI	GGNNCC	4 cut(s)	55, 414, 739, 745
BmrFI	CCNGG	6 cut(s)	34, 387, 521, 742, 773, 787
BmrI	ACTGGG	2 cut(s)	153, 678
BmsI	GCATC	1 cut(s)	1060
BmuI	ACTGGG	2 cut(s)	153, 678
BpmI	CTGGAG	2 cut(s)	168, 624
BpuEI	CTTGAG	1 cut(s)	228
BpuMI	CCSGG	5 cut(s)	34, 387, 742, 773, 787
BsaHI	GRCGYC	1 cut(s)	347
BsaJI	CCNNGG	3 cut(s)	741, 771, 845
BsaWI	WCCGGW	1 cut(s)	815
BsaXI	ACNNNNNCTCC	2 cut(s)	561, 591
Bsc4I	CCNNNNNNNGG	2 cut(s)	778, 1080
Bse118I	RCCGGY	1 cut(s)	815
Bse1I	ACTGG	2 cut(s)	159, 673
BseBI	CCWGG	1 cut(s)	521
BseDI	CCNNGG	3 cut(s)	741, 771, 845
BseLI	CCNNNNNNNGG	2 cut(s)	778, 1080
BseMII	CTCAG	3 cut(s)	540, 945, 1135
BseNI	ACTGG	2 cut(s)	159, 673
BseSI	GKGCMC	1 cut(s)	1018
BseXI	GCAGC	3 cut(s)	88, 467, 626
BsgI	GTGCAG	1 cut(s)	649
Bsh1236I	CGCG	1 cut(s)	1020
BshFI	GGCC	4 cut(s)	524, 746, 755, 844
BshNI	GGYRCC	1 cut(s)	53
BshTI	ACCGGT	1 cut(s)	815
BsiHKAI	GWGCWC	1 cut(s)	366
BsiSI	CCGG	7 cut(s)	33, 387, 416, 741, 773, 786, 816
BslFI	GGGAC	4 cut(s)	49, 503, 754, 929
BslI	CCNNNNNNNGG	2 cut(s)	778, 1080
BsmAI	GTCTC	2 cut(s)	507, 645
BsmFI	GGGAC	4 cut(s)	49, 503, 754, 929
BsmI	GAATGC	2 cut(s)	617, 721
BsnI	GGCC	4 cut(s)	524, 746, 755, 844
Bsp1286I	GDGCHC	2 cut(s)	366, 1018
Bsp143I	GATC	4 cut(s)	6, 84, 154, 810
BspACI	CCGC	3 cut(s)	299, 419, 584
BspANI	GGCC	4 cut(s)	524, 746, 755, 844
BspCNI	CTCAG	3 cut(s)	539, 944, 1134
BspFNI	CGCG	1 cut(s)	1020
BspLI	GGNNCC	4 cut(s)	55, 414, 739, 745
BspMI	ACCTGC	1 cut(s)	41
BspPI	GGATC	2 cut(s)	79, 149
BspT107I	GGYRCC	1 cut(s)	53
BsrFI	RCCGGY	1 cut(s)	815
BsrI	ACTGG	2 cut(s)	159, 673
BssAI	RCCGGY	1 cut(s)	815
BssECI	CCNNGG	3 cut(s)	741, 771, 845
BssMI	GATC	4 cut(s)	6, 84, 154, 810
BssNAI	GTATAC	1 cut(s)	955
BssNI	GRCGYC	1 cut(s)	347
BssSI	CACGAG	2 cut(s)	262, 365
BssT1I	CCWWGG	1 cut(s)	845
Bst1107I	GTATAC	1 cut(s)	955
Bst2BI	CACGAG	2 cut(s)	262, 365
Bst2UI	CCWGG	1 cut(s)	521
Bst4CI	ACNGT	4 cut(s)	289, 466, 692, 952
BstACI	GRCGYC	1 cut(s)	347
BstAPI	GCANNNNNTGC	1 cut(s)	1124
BstC8I	GCNNGC	2 cut(s)	301, 1018
BstDEI	CTNAG	4 cut(s)	526, 931, 1056, 1121
BstFNI	CGCG	1 cut(s)	1020
BstH2I	RGCGCY	1 cut(s)	897
BstHHI	GCGC	1 cut(s)	896
BstKTI	GATC	4 cut(s)	9, 87, 157, 813
BstMAI	GTCTC	2 cut(s)	507, 645
BstMBI	GATC	4 cut(s)	6, 84, 154, 810
BstMWI	GCNNNNNNNGC	5 cut(s)	80, 218, 227, 752, 1124
BstNI	CCWGG	1 cut(s)	521
BstSCI	CCNGG	6 cut(s)	32, 385, 519, 740, 771, 785
BstSLI	GKGCMC	1 cut(s)	1018
BstUI	CGCG	1 cut(s)	1020
BstV1I	GCAGC	3 cut(s)	88, 467, 626
BstXI	CCANNNNNNTGG	1 cut(s)	912
BstZ17I	GTATAC	1 cut(s)	955
BsuRI	GGCC	4 cut(s)	524, 746, 755, 844
BtgZI	GCGATG	1 cut(s)	82
BtsI	GCAGTG	1 cut(s)	837
BtsIMutI	CAGTG	4 cut(s)	166, 348, 837, 1129
BveI	ACCTGC	1 cut(s)	41
Cac8I	GCNNGC	2 cut(s)	301, 1018
CfoI	GCGC	1 cut(s)	896
Cfr10I	RCCGGY	1 cut(s)	815
Cfr13I	GGNCC	2 cut(s)	744, 754
CseI	GACGC	1 cut(s)	336
Csp6I	GTAC	3 cut(s)	183, 267, 852
CspAI	ACCGGT	1 cut(s)	815
CviAII	CATG	5 cut(s)	226, 474, 793, 886, 1063
CviQI	GTAC	3 cut(s)	183, 267, 852
DdeI	CTNAG	4 cut(s)	526, 931, 1056, 1121
DpnI	GATC	4 cut(s)	8, 86, 156, 812
DpnII	GATC	4 cut(s)	6, 84, 154, 810
DraIII	CACNNNGTG	1 cut(s)	1124
EciI	GGCGGA	1 cut(s)	434
Ecl136II	GAGCTC	1 cut(s)	364
Eco130I	CCWWGG	1 cut(s)	845
Eco147I	AGGCCT	1 cut(s)	844
Eco24I	GRGCYC	1 cut(s)	366
Eco53kI	GAGCTC	1 cut(s)	364
Eco57I	CTGAAG	1 cut(s)	255
EcoICRI	GAGCTC	1 cut(s)	364
EcoRII	CCWGG	1 cut(s)	519
EcoT14I	CCWWGG	1 cut(s)	845
EcoT38I	GRGCYC	1 cut(s)	366
ErhI	CCWWGG	1 cut(s)	845
FaeI	CATG	5 cut(s)	229, 477, 796, 889, 1066
FaqI	GGGAC	4 cut(s)	49, 503, 754, 929
FatI	CATG	5 cut(s)	225, 473, 792, 885, 1062
FauI	CCCGC	1 cut(s)	292
FauNDI	CATATG	1 cut(s)	565
FblI	GTMKAC	1 cut(s)	954
Fnu4HI	GCNGC	3 cut(s)	102, 456, 615
FriOI	GRGCYC	1 cut(s)	366
Fsp4HI	GCNGC	3 cut(s)	102, 456, 615
FspBI	CTAG	1 cut(s)	891
GlaI	GCGC	1 cut(s)	895
GluI	GCNGC	3 cut(s)	102, 456, 615
GsuI	CTGGAG	2 cut(s)	168, 624
HaeII	RGCGCY	1 cut(s)	897
HaeIII	GGCC	4 cut(s)	524, 746, 755, 844
HapII	CCGG	7 cut(s)	33, 387, 416, 741, 773, 786, 816
HgaI	GACGC	1 cut(s)	336
HhaI	GCGC	1 cut(s)	896
Hin1I	GRCGYC	1 cut(s)	347
Hin1II	CATG	5 cut(s)	229, 477, 796, 889, 1066
Hin6I	GCGC	1 cut(s)	894
HinP1I	GCGC	1 cut(s)	894
HincII	GTYRAC	1 cut(s)	292
HindII	GTYRAC	1 cut(s)	292
HinfI	GANTC	3 cut(s)	277, 338, 500
HpaII	CCGG	7 cut(s)	33, 387, 416, 741, 773, 786, 816
HphI	GGTGA	2 cut(s)	320, 805
Hpy166II	GTNNAC	2 cut(s)	292, 955
Hpy188I	TCNGA	3 cut(s)	529, 558, 733
Hpy188III	TCNNGA	7 cut(s)	15, 603, 647, 861, 978, 1051, 1108
Hpy8I	GTNNAC	2 cut(s)	292, 955
HpyAV	CCTTC	6 cut(s)	245, 695, 728, 834, 886, 1057
HpyCH4III	ACNGT	4 cut(s)	289, 466, 692, 952
HpyCH4V	TGCA	3 cut(s)	630, 721, 807
HpyF10VI	GCNNNNNNNGC	5 cut(s)	80, 218, 227, 752, 1124
HpyF3I	CTNAG	4 cut(s)	526, 931, 1056, 1121
Hsp92I	GRCGYC	1 cut(s)	347
Hsp92II	CATG	5 cut(s)	229, 477, 796, 889, 1066
HspAI	GCGC	1 cut(s)	894
Kzo9I	GATC	4 cut(s)	6, 84, 154, 810
LmnI	GCTCC	4 cut(s)	80, 149, 569, 986
Lsp1109I	GCAGC	3 cut(s)	88, 467, 626
LweI	GCATC	1 cut(s)	1060
MaeI	CTAG	1 cut(s)	891
MaeIII	GTNAC	3 cut(s)	163, 542, 692
MalI	GATC	4 cut(s)	8, 86, 156, 812
MboI	GATC	4 cut(s)	6, 84, 154, 810
MboII	GAAGA	4 cut(s)	410, 790, 1046, 1123
MhlI	GDGCHC	2 cut(s)	366, 1018
MluCI	AATT	6 cut(s)	10, 238, 552, 633, 941, 1141
MlyI	GAGTC	1 cut(s)	509
MmeI	TCCRAC	2 cut(s)	375, 530
MnlI	CCTC	6 cut(s)	166, 535, 557, 665, 666, 772
MseI	TTAA	5 cut(s)	140, 381, 944, 1085, 1144
MslI	CAYNNNNRTG	1 cut(s)	884
MspA1I	CMGCKG	1 cut(s)	458
MspI	CCGG	7 cut(s)	33, 387, 416, 741, 773, 786, 816
MspR9I	CCNGG	6 cut(s)	34, 387, 521, 742, 773, 787
Mva1269I	GAATGC	2 cut(s)	617, 721
MvaI	CCWGG	1 cut(s)	521
MvnI	CGCG	1 cut(s)	1020
MwoI	GCNNNNNNNGC	5 cut(s)	80, 218, 227, 752, 1124
NciI	CCSGG	5 cut(s)	34, 387, 742, 773, 787
NdeI	CATATG	1 cut(s)	565
NdeII	GATC	4 cut(s)	6, 84, 154, 810
NlaIII	CATG	5 cut(s)	229, 477, 796, 889, 1066
NlaIV	GGNNCC	4 cut(s)	55, 414, 739, 745
PaqCI	CACCTGC	1 cut(s)	41
PceI	AGGCCT	1 cut(s)	844
PcsI	WCGNNNNNNNCGW	1 cut(s)	363
PctI	GAATGC	2 cut(s)	617, 721
PfeI	GAWTC	2 cut(s)	277, 338
PflMI	CCANNNNNTGG	1 cut(s)	1080
PinAI	ACCGGT	1 cut(s)	815
PkrI	GCNGC	3 cut(s)	103, 457, 616
PleI	GAGTC	1 cut(s)	508
PpsI	GAGTC	1 cut(s)	508
PsiI	TTATAA	3 cut(s)	128, 434, 470
Psp124BI	GAGCTC	1 cut(s)	366
Psp6I	CCWGG	1 cut(s)	519
PspGI	CCWGG	1 cut(s)	519
PspN4I	GGNNCC	4 cut(s)	55, 414, 739, 745
PspPI	GGNCC	2 cut(s)	744, 754
PvuII	CAGCTG	1 cut(s)	458
RsaI	GTAC	3 cut(s)	184, 268, 853
RsaNI	GTAC	3 cut(s)	183, 267, 852
RseI	CAYNNNNRTG	1 cut(s)	884
SacI	GAGCTC	1 cut(s)	366
SaqAI	TTAA	5 cut(s)	140, 381, 944, 1085, 1144
SatI	GCNGC	3 cut(s)	102, 456, 615
Sau3AI	GATC	4 cut(s)	6, 84, 154, 810
Sau96I	GGNCC	2 cut(s)	744, 754
ScaI	AGTACT	1 cut(s)	268
SchI	GAGTC	1 cut(s)	509
ScrFI	CCNGG	6 cut(s)	34, 387, 521, 742, 773, 787
SduI	GDGCHC	2 cut(s)	366, 1018
SfaNI	GCATC	1 cut(s)	1060
SfiI	GGCCNNNNNGGCC	1 cut(s)	752
SgrAI	CRCCGGYG	1 cut(s)	815
SmiMI	CAYNNNNRTG	1 cut(s)	884
SmlI	CTYRAG	1 cut(s)	243
SmoI	CTYRAG	1 cut(s)	243
Sse9I	AATT	6 cut(s)	10, 238, 552, 633, 941, 1141
SseBI	AGGCCT	1 cut(s)	844
SsiI	CCGC	3 cut(s)	299, 419, 584
SspMI	CTAG	1 cut(s)	891
SstI	GAGCTC	1 cut(s)	366
StuI	AGGCCT	1 cut(s)	844
StyD4I	CCNGG	6 cut(s)	32, 385, 519, 740, 771, 785
StyI	CCWWGG	1 cut(s)	845
TaaI	ACNGT	4 cut(s)	289, 466, 692, 952
TaqI	TCGA	4 cut(s)	5, 498, 998, 1041
TasI	AATT	6 cut(s)	10, 238, 552, 633, 941, 1141
TatI	WGTACW	1 cut(s)	266
TfiI	GAWTC	2 cut(s)	277, 338
Tru1I	TTAA	5 cut(s)	140, 381, 944, 1085, 1144
Tru9I	TTAA	5 cut(s)	140, 381, 944, 1085, 1144
TscAI	CASTG	4 cut(s)	166, 348, 837, 1129
TseI	GCWGC	3 cut(s)	101, 455, 614
TspDTI	ATGAA	7 cut(s)	13, 196, 209, 214, 411, 523, 781
TspGWI	ACGGA	1 cut(s)	775
TspRI	CASTG	4 cut(s)	166, 348, 837, 1129
Van91I	CCANNNNNTGG	1 cut(s)	1080
XapI	RAATTY	2 cut(s)	238, 633
XcmI	CCANNNNNNNNNTGG	1 cut(s)	340
XmiI	GTMKAC	1 cut(s)	954
XspI	CTAG	1 cut(s)	891
ZrmI	AGTACT	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.