Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002944

Physical Location & Seq

Genomic Coordinates Forward (+)

35482500 .. 35483512

Gene Structure 1013 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G402200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGAGGCGTCGCAGCCAGGGAGTCCAAGCACAGCTCAATCAGCGGTGGAAGAGGAGTTGGTGAAGTGCTACTGCTGCGGGTTGACAGAGGAATGCACGCCGGAGTACATAGCTATAGTGAAGGAGAGGCAACAGGGCCGTTGGATTTGCGGACTTTGTGCGGAGGCGATCAAGGAAGAGAACTCAAGGTCGCATAGGGGCCTCAACGACGAGGAGGCGATGAAACGGCACGCCAGTTTTCGTGAGGAGTTTCGGTTGTCGAGCCCTCCAGAGAAGTCTGCTGAGGAATTGATATCGGCGATGAAGAAGCTTTTGCGACGGACTTTGAACTCCCCAAAAAAAGAGGGGTTGGGTTGCCAACCCGCTCTTTCGAGGTCGAAGAGCTCCTTTGCACCGGTGGTGAAAGGAAGTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1677

Protein Analysis

139

Amino Acids

15.25

Weight (kDa)

7.55

Isoelectric Point (pI)

85.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002944)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72510 AT1G72510 AT2G09970
fragaria_vesca	FvH4_2g30810 FvH4_6g35020
malus_domestica	MD04G1143800.v1.1 MD06G1201300.v1.1 MD08G1046000.v1.1 MD08G1057000.v1.1 MD09G1180300.v1.1 MD15G1047800.v1.1 MD17G1165800.v1.1
prunus_persica	Prupe.1G394900_v2.0.a1 Prupe.1G402200_v2.0.a1 Prupe.3G038900_v2.0.a1
pyrus_communis	pycom08g03800 pycom09g09780
rosa_chinensis	RchiOBHm_Chr2g0146181 RchiOBHm_Chr6g0312041
rosa_laevigata	RLG00000010358 RLG00000020184
rosa_multiflora	Rmu_sc0005381.1_g000011 Rmu_sc0010454.1_g000012
rosa_roxburghii	Rroxscaffold_152G00434880 Rroxscaffold_2G00100280 Rroxscaffold_7G00157100
rosa_rugosa	Rorug02G0393600 Rorug06G0392500
rosa_samantha	Rh2AG449300 Rh2BG461800 Rh2CG436200 Rh2DG471000 Rh6AG508900 Rh6BG520200 Rh6CG526100 Rh6DG511600
rosa_wichuraiana	Rw2G036680 Rw6G044320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	365
AciI	CCGC	5 cut(s)	44, 78, 150, 161, 363
AcyI	GRCGYC	1 cut(s)	8
AfaI	GTAC	1 cut(s)	107
AgeI	ACCGGT	1 cut(s)	394
AgsI	TTSAA	1 cut(s)	328
AjnI	CCWGG	1 cut(s)	16
AluBI	AGCT	4 cut(s)	35, 113, 310, 384
AluI	AGCT	4 cut(s)	35, 113, 310, 384
Alw21I	GWGCWC	1 cut(s)	386
AoxI	GGCC	2 cut(s)	136, 199
ApeKI	GCWGC	2 cut(s)	13, 75
AsiGI	ACCGGT	1 cut(s)	394
AspS9I	GGNCC	2 cut(s)	136, 199
AsuHPI	GGTGA	2 cut(s)	73, 412
BanII	GRGCYC	2 cut(s)	266, 386
Bbv12I	GWGCWC	1 cut(s)	386
BbvCI	CCTCAGC	1 cut(s)	282
BbvI	GCAGC	2 cut(s)	25, 62
BceAI	ACGGC	2 cut(s)	123, 242
BciT130I	CCWGG	1 cut(s)	18
BfmI	CTRYAG	1 cut(s)	114
BisI	GCNGC	2 cut(s)	14, 76
BlsI	GCNGC	2 cut(s)	15, 77
Bme1390I	CCNGG	1 cut(s)	18
BmgT120I	GGNCC	2 cut(s)	136, 199
BmiI	GGNNCC	1 cut(s)	200
BmrFI	CCNGG	1 cut(s)	18
BpmI	CTGGAG	1 cut(s)	252
Bpu10I	CCTNAGC	1 cut(s)	282
BpuEI	CTTGAG	1 cut(s)	169
BsaHI	GRCGYC	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	17
BsaWI	WCCGGW	1 cut(s)	394
BsaXI	ACNNNNNCTCC	2 cut(s)	239, 269
Bse118I	RCCGGY	1 cut(s)	394
Bse1I	ACTGG	1 cut(s)	234
BseBI	CCWGG	1 cut(s)	18
BseDI	CCNNGG	1 cut(s)	17
BseMII	CTCAG	1 cut(s)	273
BseNI	ACTGG	1 cut(s)	234
BseRI	GAGGAG	3 cut(s)	68, 227, 260
BseXI	GCAGC	2 cut(s)	25, 62
BshFI	GGCC	2 cut(s)	138, 201
BshTI	ACCGGT	1 cut(s)	394
BsiHKAI	GWGCWC	1 cut(s)	386
BsiSI	CCGG	2 cut(s)	101, 395
BsmI	GAATGC	1 cut(s)	98
BsnI	GGCC	2 cut(s)	138, 201
Bsp1286I	GDGCHC	2 cut(s)	266, 386
Bsp143I	GATC	1 cut(s)	168
BspACI	CCGC	5 cut(s)	44, 78, 150, 161, 363
BspANI	GGCC	2 cut(s)	138, 201
BspCNI	CTCAG	1 cut(s)	274
BspLI	GGNNCC	1 cut(s)	200
BspQI	GCTCTTC	1 cut(s)	374
BsrBI	CCGCTC	1 cut(s)	365
BsrFI	RCCGGY	1 cut(s)	394
BsrI	ACTGG	1 cut(s)	234
BssAI	RCCGGY	1 cut(s)	394
BssECI	CCNNGG	1 cut(s)	17
BssMI	GATC	1 cut(s)	168
BssNI	GRCGYC	1 cut(s)	8
Bst2UI	CCWGG	1 cut(s)	18
Bst6I	CTCTTC	3 cut(s)	45, 171, 374
BstACI	GRCGYC	1 cut(s)	8
BstC8I	GCNNGC	2 cut(s)	98, 231
BstDEI	CTNAG	1 cut(s)	282
BstKTI	GATC	1 cut(s)	171
BstMBI	GATC	1 cut(s)	168
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 75
BstNI	CCWGG	1 cut(s)	18
BstSCI	CCNGG	1 cut(s)	16
BstSFI	CTRYAG	1 cut(s)	114
BstV1I	GCAGC	2 cut(s)	25, 62
BsuRI	GGCC	2 cut(s)	138, 201
BtgZI	GCGATG	2 cut(s)	233, 314
Cac8I	GCNNGC	2 cut(s)	98, 231
Cfr10I	RCCGGY	1 cut(s)	394
Cfr13I	GGNCC	2 cut(s)	136, 199
Csp6I	GTAC	1 cut(s)	106
CspAI	ACCGGT	1 cut(s)	394
CviJI	RGCY	8 cut(s)	16, 35, 113, 138, 201, 264, 310, 384
CviKI_1	RGCY	8 cut(s)	16, 35, 113, 138, 201, 264, 310, 384
CviQI	GTAC	1 cut(s)	106
DdeI	CTNAG	1 cut(s)	282
DpnI	GATC	1 cut(s)	170
DpnII	GATC	1 cut(s)	168
Eam1104I	CTCTTC	3 cut(s)	45, 171, 374
EarI	CTCTTC	3 cut(s)	45, 171, 374
Ecl136II	GAGCTC	1 cut(s)	384
Eco24I	GRGCYC	2 cut(s)	266, 386
Eco32I	GATATC	1 cut(s)	294
Eco53kI	GAGCTC	1 cut(s)	384
EcoICRI	GAGCTC	1 cut(s)	384
EcoO109I	RGGNCCY	1 cut(s)	199
EcoRII	CCWGG	1 cut(s)	16
EcoRV	GATATC	1 cut(s)	294
EcoT38I	GRGCYC	2 cut(s)	266, 386
FaiI	YATR	3 cut(s)	110, 116, 195
FalI	AAGNNNNNCTT	2 cut(s)	371, 403
FauI	CCCGC	2 cut(s)	71, 370
Fnu4HI	GCNGC	2 cut(s)	14, 76
FriOI	GRGCYC	2 cut(s)	266, 386
Fsp4HI	GCNGC	2 cut(s)	14, 76
GluI	GCNGC	2 cut(s)	14, 76
GsuI	CTGGAG	1 cut(s)	252
HaeIII	GGCC	2 cut(s)	138, 201
HapII	CCGG	2 cut(s)	101, 395
Hin1I	GRCGYC	1 cut(s)	8
HincII	GTYRAC	1 cut(s)	84
HindII	GTYRAC	1 cut(s)	84
HindIII	AAGCTT	1 cut(s)	308
HinfI	GANTC	1 cut(s)	22
HpaII	CCGG	2 cut(s)	101, 395
HphI	GGTGA	2 cut(s)	73, 412
Hpy166II	GTNNAC	1 cut(s)	84
Hpy188III	TCNNGA	2 cut(s)	242, 269
Hpy8I	GTNNAC	1 cut(s)	84
Hpy99I	CGWCG	3 cut(s)	13, 212, 321
HpyAV	CCTTC	1 cut(s)	115
HpyCH4V	TGCA	2 cut(s)	96, 392
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 75
HpyF3I	CTNAG	1 cut(s)	282
Hsp92I	GRCGYC	1 cut(s)	8
Kzo9I	GATC	1 cut(s)	168
LguI	GCTCTTC	1 cut(s)	374
LmnI	GCTCC	1 cut(s)	389
LpnPI	CCDG	7 cut(s)	3, 30, 114, 119, 247, 282, 408
Lsp1109I	GCAGC	2 cut(s)	25, 62
MalI	GATC	1 cut(s)	170
MbiI	CCGCTC	1 cut(s)	365
MboI	GATC	1 cut(s)	168
MboII	GAAGA	4 cut(s)	62, 188, 316, 391
MhlI	GDGCHC	2 cut(s)	266, 386
MluCI	AATT	1 cut(s)	287
MlyI	GAGTC	1 cut(s)	31
MmeI	TCCRAC	1 cut(s)	122
MspA1I	CMGCKG	1 cut(s)	44
MspI	CCGG	2 cut(s)	101, 395
MspR9I	CCNGG	1 cut(s)	18
Mva1269I	GAATGC	1 cut(s)	98
MvaI	CCWGG	1 cut(s)	18
MwoI	GCNNNNNNNGC	2 cut(s)	41, 75
NdeII	GATC	1 cut(s)	168
NlaIV	GGNNCC	1 cut(s)	200
PciSI	GCTCTTC	1 cut(s)	374
PctI	GAATGC	1 cut(s)	98
PinAI	ACCGGT	1 cut(s)	394
PkrI	GCNGC	2 cut(s)	15, 77
PleI	GAGTC	1 cut(s)	30
PpsI	GAGTC	1 cut(s)	30
Psp124BI	GAGCTC	1 cut(s)	386
Psp6I	CCWGG	1 cut(s)	16
PspGI	CCWGG	1 cut(s)	16
PspN4I	GGNNCC	1 cut(s)	200
PspPI	GGNCC	2 cut(s)	136, 199
RsaI	GTAC	1 cut(s)	107
RsaNI	GTAC	1 cut(s)	106
SacI	GAGCTC	1 cut(s)	386
SapI	GCTCTTC	1 cut(s)	374
SatI	GCNGC	2 cut(s)	14, 76
Sau3AI	GATC	1 cut(s)	168
Sau96I	GGNCC	2 cut(s)	136, 199
SchI	GAGTC	1 cut(s)	31
ScrFI	CCNGG	1 cut(s)	18
SduI	GDGCHC	2 cut(s)	266, 386
SetI	ASST	6 cut(s)	37, 115, 191, 312, 377, 386
SfcI	CTRYAG	1 cut(s)	114
SgrAI	CRCCGGYG	1 cut(s)	394
SmlI	CTYRAG	1 cut(s)	184
SmoI	CTYRAG	1 cut(s)	184
Sse9I	AATT	1 cut(s)	287
SsiI	CCGC	5 cut(s)	44, 78, 150, 161, 363
SstI	GAGCTC	1 cut(s)	386
StyD4I	CCNGG	1 cut(s)	16
TaqI	TCGA	3 cut(s)	260, 371, 377
TasI	AATT	1 cut(s)	287
TatI	WGTACW	1 cut(s)	105
TseI	GCWGC	2 cut(s)	13, 75
TspDTI	ATGAA	2 cut(s)	236, 317
TspGWI	ACGGA	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.