Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002944

Physical Location & Seq

Genomic Coordinates Forward (+)

2800907 .. 2802706

Gene Structure 1800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G038900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGCATTATCTGCAACTATTCTCAGCGACCCAATGGTTCTGCCACCAGCCGCAGAAACCCAACAACCGCAAGCCACAAAACTCATTGCCCAAATCGAAATCGAGTTTGTTAAATGTGACTGCTGCGGCCTGTCGGAGGAATGCACCCCGGCCTACATTCAACATGTTCGGGAACGATATCAGGGCCATTGGATATGTGGGTTGTGTGCAGAGGCCATCAAAGATGAGATTGTGAGGTCTGAGAGGCTCATAAGCACAGAAGAAGCCATGGCTACCCACATGAACTTCTGCAAGAAGTTTAAGGCGTCAGGGCCCCCTCCAGACCCAACGGTTCACTTGATATCTGCCATGAGGCAGATTCTTAGGCGCAGTTTGGATTCTCCAAGGGTTTTGAGATCAACTCCAACTAGCCCAACAAAGATCAATGGCAAGGGGCTTAAAAGGTCTGAGAGTTGCTTTCCAACTCTCACTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1677

Protein Analysis

159

Amino Acids

17.47

Weight (kDa)

8.13

Isoelectric Point (pI)

69.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002944)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72510 AT1G72510 AT2G09970
fragaria_vesca	FvH4_2g30810 FvH4_6g35020
malus_domestica	MD04G1143800.v1.1 MD06G1201300.v1.1 MD08G1046000.v1.1 MD08G1057000.v1.1 MD09G1180300.v1.1 MD15G1047800.v1.1 MD17G1165800.v1.1
prunus_persica	Prupe.1G394900_v2.0.a1 Prupe.1G402200_v2.0.a1 Prupe.3G038900_v2.0.a1
pyrus_communis	pycom08g03800 pycom09g09780
rosa_chinensis	RchiOBHm_Chr2g0146181 RchiOBHm_Chr6g0312041
rosa_laevigata	RLG00000010358 RLG00000020184
rosa_multiflora	Rmu_sc0005381.1_g000011 Rmu_sc0010454.1_g000012
rosa_roxburghii	Rroxscaffold_152G00434880 Rroxscaffold_2G00100280 Rroxscaffold_7G00157100
rosa_rugosa	Rorug02G0393600 Rorug06G0392500
rosa_samantha	Rh2AG449300 Rh2BG461800 Rh2CG436200 Rh2DG471000 Rh6AG508900 Rh6BG520200 Rh6CG526100 Rh6DG511600
rosa_wichuraiana	Rw2G036680 Rw6G044320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	51, 68, 126
AcyI	GRCGYC	1 cut(s)	305
AfiI	CCNNNNNNNGG	1 cut(s)	136
AflIII	ACRYGT	1 cut(s)	163
AgsI	TTSAA	1 cut(s)	161
AoxI	GGCC	5 cut(s)	127, 150, 184, 213, 311
ApaI	GGGCCC	1 cut(s)	315
ApeKI	GCWGC	1 cut(s)	123
AspLEI	GCGC	1 cut(s)	369
AspS9I	GGNCC	3 cut(s)	184, 311, 312
AsuC2I	CCSGG	1 cut(s)	149
BaeGI	GKGCMC	1 cut(s)	315
BanII	GRGCYC	1 cut(s)	315
BbvI	GCAGC	1 cut(s)	110
BccI	CCATC	1 cut(s)	224
BcnI	CCSGG	1 cut(s)	149
BfaI	CTAG	1 cut(s)	408
BisI	GCNGC	3 cut(s)	51, 124, 127
BlsI	GCNGC	3 cut(s)	52, 125, 128
Bme1390I	CCNGG	1 cut(s)	149
BmgT120I	GGNCC	3 cut(s)	184, 311, 312
BmiI	GGNNCC	2 cut(s)	313, 314
BmrFI	CCNGG	1 cut(s)	149
BplI	GAGNNNNNCTC	2 cut(s)	385, 417
BpmI	CTGGAG	1 cut(s)	303
BpuMI	CCSGG	1 cut(s)	149
BsaHI	GRCGYC	1 cut(s)	305
BsaJI	CCNNGG	3 cut(s)	147, 267, 383
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
Bse1I	ACTGG	1 cut(s)	475
Bse3DI	GCAATG	1 cut(s)	84
BseDI	CCNNGG	3 cut(s)	147, 267, 383
BseLI	CCNNNNNNNGG	1 cut(s)	136
BseMI	GCAATG	1 cut(s)	84
BseMII	CTCAG	3 cut(s)	37, 231, 438
BseNI	ACTGG	1 cut(s)	475
BseSI	GKGCMC	1 cut(s)	315
BseXI	GCAGC	1 cut(s)	110
BsgI	GTGCAG	1 cut(s)	228
BshFI	GGCC	5 cut(s)	129, 152, 186, 215, 313
BsiSI	CCGG	1 cut(s)	149
BslI	CCNNNNNNNGG	1 cut(s)	136
BsmI	GAATGC	1 cut(s)	146
BsnI	GGCC	5 cut(s)	129, 152, 186, 215, 313
Bsp120I	GGGCCC	1 cut(s)	311
Bsp1286I	GDGCHC	1 cut(s)	315
Bsp143I	GATC	2 cut(s)	395, 420
Bsp19I	CCATGG	1 cut(s)	267
BspACI	CCGC	3 cut(s)	51, 68, 126
BspANI	GGCC	5 cut(s)	129, 152, 186, 215, 313
BspCNI	CTCAG	3 cut(s)	36, 232, 439
BspLI	GGNNCC	2 cut(s)	313, 314
BsrDI	GCAATG	1 cut(s)	84
BsrI	ACTGG	1 cut(s)	475
BssECI	CCNNGG	3 cut(s)	147, 267, 383
BssMI	GATC	2 cut(s)	395, 420
BssNI	GRCGYC	1 cut(s)	305
BssT1I	CCWWGG	2 cut(s)	267, 383
Bst4CI	ACNGT	1 cut(s)	331
BstACI	GRCGYC	1 cut(s)	305
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	72
BstDEI	CTNAG	4 cut(s)	23, 240, 362, 447
BstDSI	CCRYGG	1 cut(s)	267
BstENI	CCTNNNNNAGG	1 cut(s)	134
BstHHI	GCGC	1 cut(s)	369
BstKTI	GATC	2 cut(s)	398, 423
BstMBI	GATC	2 cut(s)	395, 420
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNSI	RCATGY	1 cut(s)	167
BstSCI	CCNGG	1 cut(s)	147
BstSLI	GKGCMC	1 cut(s)	315
BstV1I	GCAGC	1 cut(s)	110
BsuRI	GGCC	5 cut(s)	129, 152, 186, 215, 313
BtgI	CCRYGG	1 cut(s)	267
BtsIMutI	CAGTG	1 cut(s)	468
Cac8I	GCNNGC	1 cut(s)	72
CfoI	GCGC	1 cut(s)	369
Cfr13I	GGNCC	3 cut(s)	184, 311, 312
CseI	GACGC	1 cut(s)	294
CviAII	CATG	4 cut(s)	164, 268, 280, 349
DdeI	CTNAG	4 cut(s)	23, 240, 362, 447
DpnI	GATC	2 cut(s)	397, 422
DpnII	GATC	2 cut(s)	395, 420
Eco130I	CCWWGG	2 cut(s)	267, 383
Eco24I	GRGCYC	1 cut(s)	315
Eco32I	GATATC	2 cut(s)	179, 342
EcoNI	CCTNNNNNAGG	1 cut(s)	134
EcoO109I	RGGNCCY	2 cut(s)	311, 312
EcoRV	GATATC	2 cut(s)	179, 342
EcoT14I	CCWWGG	2 cut(s)	267, 383
EcoT38I	GRGCYC	1 cut(s)	315
ErhI	CCWWGG	2 cut(s)	267, 383
FaeI	CATG	4 cut(s)	167, 271, 283, 352
FaiI	YATR	6 cut(s)	165, 196, 251, 269, 281, 350
FatI	CATG	4 cut(s)	163, 267, 279, 348
Fnu4HI	GCNGC	3 cut(s)	51, 124, 127
FriOI	GRGCYC	1 cut(s)	315
Fsp4HI	GCNGC	3 cut(s)	51, 124, 127
FspBI	CTAG	1 cut(s)	408
GlaI	GCGC	1 cut(s)	368
GluI	GCNGC	3 cut(s)	51, 124, 127
GsuI	CTGGAG	1 cut(s)	303
HaeIII	GGCC	5 cut(s)	129, 152, 186, 215, 313
HapII	CCGG	1 cut(s)	149
HgaI	GACGC	1 cut(s)	294
HhaI	GCGC	1 cut(s)	369
Hin1I	GRCGYC	1 cut(s)	305
Hin1II	CATG	4 cut(s)	167, 271, 283, 352
Hin6I	GCGC	1 cut(s)	367
HinP1I	GCGC	1 cut(s)	367
HinfI	GANTC	2 cut(s)	358, 377
HpaII	CCGG	1 cut(s)	149
Hpy166II	GTNNAC	1 cut(s)	334
Hpy188I	TCNGA	3 cut(s)	136, 241, 448
Hpy188III	TCNNGA	2 cut(s)	170, 320
Hpy8I	GTNNAC	1 cut(s)	334
HpyCH4III	ACNGT	1 cut(s)	331
HpyCH4V	TGCA	4 cut(s)	14, 144, 209, 291
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	4 cut(s)	23, 240, 362, 447
Hsp92I	GRCGYC	1 cut(s)	305
Hsp92II	CATG	4 cut(s)	167, 271, 283, 352
HspAI	GCGC	1 cut(s)	367
Kzo9I	GATC	2 cut(s)	395, 420
LpnPI	CCDG	7 cut(s)	60, 143, 162, 167, 294, 333, 456
Lsp1109I	GCAGC	1 cut(s)	110
MaeI	CTAG	1 cut(s)	408
MaeIII	GTNAC	1 cut(s)	116
MalI	GATC	2 cut(s)	397, 422
MboI	GATC	2 cut(s)	395, 420
MboII	GAAGA	1 cut(s)	272
MhlI	GDGCHC	1 cut(s)	315
MmeI	TCCRAC	2 cut(s)	114, 428
MnlI	CCTC	6 cut(s)	130, 205, 228, 237, 327, 345
MseI	TTAA	3 cut(s)	111, 300, 438
MspI	CCGG	1 cut(s)	149
MspR9I	CCNGG	1 cut(s)	149
Mva1269I	GAATGC	1 cut(s)	146
MwoI	GCNNNNNNNGC	1 cut(s)	11
NciI	CCSGG	1 cut(s)	149
NcoI	CCATGG	1 cut(s)	267
NdeII	GATC	2 cut(s)	395, 420
NlaIII	CATG	4 cut(s)	167, 271, 283, 352
NlaIV	GGNNCC	2 cut(s)	313, 314
NmuCI	GTSAC	1 cut(s)	116
NspI	RCATGY	1 cut(s)	167
PciI	ACATGT	1 cut(s)	163
PctI	GAATGC	1 cut(s)	146
PfeI	GAWTC	2 cut(s)	358, 377
PkrI	GCNGC	3 cut(s)	52, 125, 128
PscI	ACATGT	1 cut(s)	163
PspN4I	GGNNCC	2 cut(s)	313, 314
PspOMI	GGGCCC	1 cut(s)	311
PspPI	GGNCC	3 cut(s)	184, 311, 312
SaqAI	TTAA	3 cut(s)	111, 300, 438
SatI	GCNGC	3 cut(s)	51, 124, 127
Sau3AI	GATC	2 cut(s)	395, 420
Sau96I	GGNCC	3 cut(s)	184, 311, 312
ScrFI	CCNGG	1 cut(s)	149
SduI	GDGCHC	1 cut(s)	315
SetI	ASST	2 cut(s)	239, 446
SsiI	CCGC	3 cut(s)	51, 68, 126
SspMI	CTAG	1 cut(s)	408
StyD4I	CCNGG	1 cut(s)	147
StyI	CCWWGG	2 cut(s)	267, 383
TaaI	ACNGT	1 cut(s)	331
TaqI	TCGA	2 cut(s)	96, 102
TauI	GCSGC	2 cut(s)	53, 129
TfiI	GAWTC	2 cut(s)	358, 377
Tru1I	TTAA	3 cut(s)	111, 300, 438
Tru9I	TTAA	3 cut(s)	111, 300, 438
TscAI	CASTG	1 cut(s)	475
TseFI	GTSAC	1 cut(s)	116
TseI	GCWGC	1 cut(s)	123
Tsp45I	GTSAC	1 cut(s)	116
TspDTI	ATGAA	1 cut(s)	296
TspRI	CASTG	1 cut(s)	475
XagI	CCTNNNNNAGG	1 cut(s)	134
XceI	RCATGY	1 cut(s)	167
XcmI	CCANNNNNNNNNTGG	1 cut(s)	194
XspI	CTAG	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.