Rh6BG520200

Protein of unknown function (DUF1677)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0002944
Physical Location & Seq
Reverse (-)
71380612 .. 71381409
798 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG520200.1

Sequence Viewer

Length: 468 bp
ATGGCATTAGTCTCTCCGATGGAGGAGTCTGCTGCCGGTGCCGATGAGGTGGAGATGGTGACGTGTCACTGCTGCGGGTTGGAGGAGGAGTGCACGCCGGGATATATAGCGCGGGAAAGGGAGAAGCACCATGGCCGTTGGATCTGCGGGCTTTGCTCGACGGCGATCGAGGACGACAGGATGAAGTTGCAGAGGAAGATCACCGCCGACGAGGCCATCAGGCGCCACGTCAAGTTTTACGAGAACTTTCGGTCGACGTCTCCGAGGAGGAGTGTGGATTCTTCCGCGGCGGAGGAGGAGGAGGAGGAGGAGAAGGACTTGTTGATCTCGAAGGTGATGCAGCTCCTGCGGCGGACTTTGGACTCGCCGAGGAGGACCGGGACGGGTTCCGGTCGCGGGGCGTTTGATCACCGTCTTTTGAGGTCGAAGAGCTGCTTTGCGACTATAGGAGAGAAGGGTCTAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1677

Protein Analysis

155

Amino Acids

17.51

Weight (kDa)

5.8

Isoelectric Point (pI)

78.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1677 PF07911 17 - 92 5.9e-26 Protein of unknown function (DUF1677)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 260
AccB1I GGYRCC 2 cut(s) 38, 222
AccI GTMKAC 1 cut(s) 254
AccII CGCG 3 cut(s) 112, 287, 396
AclWI GGATC 1 cut(s) 149
AcoI YGGCCR 1 cut(s) 133
AcyI GRCGYC 2 cut(s) 223, 257
AfiI CCNNNNNNNGG 1 cut(s) 396
AflIII ACRYGT 1 cut(s) 62
AjiI CACGTC 2 cut(s) 63, 229
AluBI AGCT 2 cut(s) 343, 432
AluI AGCT 2 cut(s) 343, 432
Alw21I GWGCWC 1 cut(s) 95
Alw26I GTCTC 2 cut(s) 16, 264
Alw44I GTGCAC 1 cut(s) 91
AlwI GGATC 1 cut(s) 149
AlwNI CAGNNNCTG 1 cut(s) 346
AoxI GGCC 2 cut(s) 133, 213
ApaLI GTGCAC 1 cut(s) 91
ApeKI GCWGC 4 cut(s) 32, 72, 340, 432
AspLEI GCGC 2 cut(s) 112, 225
AspS9I GGNCC 1 cut(s) 375
AsuC2I CCSGG 2 cut(s) 99, 379
AsuHPI GGTGA 4 cut(s) 70, 193, 346, 401
AvaII GGWCC 1 cut(s) 375
BaeGI GKGCMC 1 cut(s) 95
BanI GGYRCC 2 cut(s) 38, 222
Bbv12I GWGCWC 1 cut(s) 95
BbvI GCAGC 4 cut(s) 19, 59, 352, 419
BccI CCATC 3 cut(s) 13, 49, 224
BceAI ACGGC 2 cut(s) 120, 177
BcgI CGANNNNNNTGC 2 cut(s) 319, 353
BclI TGATCA 1 cut(s) 406
BcnI CCSGG 2 cut(s) 99, 379
BcoDI GTCTC 2 cut(s) 16, 264
BfaI CTAG 1 cut(s) 461
BfmI CTRYAG 1 cut(s) 444
BfoI RGCGCY 1 cut(s) 226
BglI GCCNNNNNGGC 1 cut(s) 212
BisI GCNGC 6 cut(s) 33, 73, 288, 341, 350, 433
BlsI GCNGC 6 cut(s) 34, 74, 289, 342, 351, 434
Bme1390I CCNGG 2 cut(s) 99, 379
Bme18I GGWCC 1 cut(s) 375
BmgBI CACGTC 2 cut(s) 63, 229
BmgT120I GGNCC 1 cut(s) 375
BmiI GGNNCC 3 cut(s) 40, 224, 388
BmrFI CCNGG 2 cut(s) 99, 379
BmsI GCATC 1 cut(s) 327
BpuMI CCSGG 2 cut(s) 99, 379
BsaHI GRCGYC 2 cut(s) 223, 257
BsaJI CCNNGG 4 cut(s) 130, 263, 285, 368
BsaWI WCCGGW 1 cut(s) 389
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bsc4I CCNNNNNNNGG 1 cut(s) 396
Bse118I RCCGGY 1 cut(s) 35
BseDI CCNNGG 4 cut(s) 130, 263, 285, 368
BseGI GGATG 1 cut(s) 186
BseLI CCNNNNNNNGG 1 cut(s) 396
BseSI GKGCMC 1 cut(s) 95
BseXI GCAGC 4 cut(s) 19, 59, 352, 419
Bsh1236I CGCG 3 cut(s) 112, 287, 396
Bsh1285I CGRYCG 3 cut(s) 168, 254, 394
BshFI GGCC 2 cut(s) 135, 215
BshNI GGYRCC 2 cut(s) 38, 222
BsiEI CGRYCG 3 cut(s) 168, 254, 394
BsiHKAI GWGCWC 1 cut(s) 95
BsiSI CCGG 4 cut(s) 36, 98, 378, 390
BslFI GGGAC 1 cut(s) 394
BslI CCNNNNNNNGG 1 cut(s) 396
BsmAI GTCTC 2 cut(s) 16, 264
BsmBI CGTCTC 1 cut(s) 264
BsmFI GGGAC 1 cut(s) 394
BsnI GGCC 2 cut(s) 135, 215
Bsp1286I GDGCHC 1 cut(s) 95
Bsp143I GATC 5 cut(s) 141, 165, 198, 324, 406
Bsp19I CCATGG 1 cut(s) 130
BspANI GGCC 2 cut(s) 135, 215
BspFNI CGCG 3 cut(s) 112, 287, 396
BspLI GGNNCC 3 cut(s) 40, 224, 388
BspPI GGATC 1 cut(s) 149
BspQI GCTCTTC 1 cut(s) 422
BspT107I GGYRCC 2 cut(s) 38, 222
BsrFI RCCGGY 1 cut(s) 35
BssAI RCCGGY 1 cut(s) 35
BssECI CCNNGG 4 cut(s) 130, 263, 285, 368
BssMI GATC 5 cut(s) 141, 165, 198, 324, 406
BssNI GRCGYC 2 cut(s) 223, 257
BssT1I CCWWGG 1 cut(s) 130
Bst4CI ACNGT 1 cut(s) 413
Bst6I CTCTTC 1 cut(s) 422
BstACI GRCGYC 2 cut(s) 223, 257
BstAPI GCANNNNNTGC 1 cut(s) 346
BstC8I GCNNGC 2 cut(s) 95, 149
BstDSI CCRYGG 2 cut(s) 130, 285
BstF5I GGATG 1 cut(s) 186
BstFNI CGCG 3 cut(s) 112, 287, 396
BstH2I RGCGCY 1 cut(s) 226
BstHHI GCGC 2 cut(s) 112, 225
BstKTI GATC 5 cut(s) 144, 168, 201, 327, 409
BstMAI GTCTC 2 cut(s) 16, 264
BstMBI GATC 5 cut(s) 141, 165, 198, 324, 406
BstMCI CGRYCG 3 cut(s) 168, 254, 394
BstMWI GCNNNNNNNGC 5 cut(s) 38, 153, 212, 346, 349
BstSCI CCNGG 2 cut(s) 97, 377
BstSFI CTRYAG 1 cut(s) 444
BstSLI GKGCMC 1 cut(s) 95
BstUI CGCG 3 cut(s) 112, 287, 396
BstV1I GCAGC 4 cut(s) 19, 59, 352, 419
BstX2I RGATCY 1 cut(s) 141
BstYI RGATCY 1 cut(s) 141
BsuRI GGCC 2 cut(s) 135, 215
BtgI CCRYGG 2 cut(s) 130, 285
BtrI CACGTC 2 cut(s) 63, 229
BtsCI GGATG 1 cut(s) 186
BtsI GCAGTG 1 cut(s) 67
BtsIMutI CAGTG 1 cut(s) 67
Cac8I GCNNGC 2 cut(s) 95, 149
CaiI CAGNNNCTG 1 cut(s) 346
CfoI GCGC 2 cut(s) 112, 225
Cfr10I RCCGGY 1 cut(s) 35
Cfr13I GGNCC 1 cut(s) 375
Cfr42I CCGCGG 1 cut(s) 288
CviAII CATG 1 cut(s) 131
CviJI RGCY 5 cut(s) 135, 151, 215, 343, 432
CviKI_1 RGCY 5 cut(s) 135, 151, 215, 343, 432
DinI GGCGCC 1 cut(s) 224
DpnI GATC 5 cut(s) 143, 167, 200, 326, 408
DpnII GATC 5 cut(s) 141, 165, 198, 324, 406
EaeI YGGCCR 1 cut(s) 133
Eam1104I CTCTTC 1 cut(s) 422
EarI CTCTTC 1 cut(s) 422
EciI GGCGGA 2 cut(s) 305, 367
Eco130I CCWWGG 1 cut(s) 130
Eco47I GGWCC 1 cut(s) 375
EcoT14I CCWWGG 1 cut(s) 130
EgeI GGCGCC 1 cut(s) 224
EheI GGCGCC 1 cut(s) 224
ErhI CCWWGG 1 cut(s) 130
Esp3I CGTCTC 1 cut(s) 264
FaeI CATG 1 cut(s) 134
FaiI YATR 4 cut(s) 105, 107, 132, 446
FalI AAGNNNNNCTT 2 cut(s) 419, 451
FaqI GGGAC 1 cut(s) 394
FatI CATG 1 cut(s) 130
FauI CCCGC 4 cut(s) 68, 105, 140, 389
FbaI TGATCA 1 cut(s) 406
FblI GTMKAC 1 cut(s) 254
Fnu4HI GCNGC 6 cut(s) 33, 73, 288, 341, 350, 433
FokI GGATG 1 cut(s) 193
Fsp4HI GCNGC 6 cut(s) 33, 73, 288, 341, 350, 433
FspBI CTAG 1 cut(s) 461
GlaI GCGC 2 cut(s) 111, 224
GluI GCNGC 6 cut(s) 33, 73, 288, 341, 350, 433
HaeII RGCGCY 1 cut(s) 226
HaeIII GGCC 2 cut(s) 135, 215
HapII CCGG 4 cut(s) 36, 98, 378, 390
HhaI GCGC 2 cut(s) 112, 225
Hin1I GRCGYC 2 cut(s) 223, 257
Hin1II CATG 1 cut(s) 134
Hin6I GCGC 2 cut(s) 110, 223
HinP1I GCGC 2 cut(s) 110, 223
HincII GTYRAC 1 cut(s) 255
HindII GTYRAC 1 cut(s) 255
HinfI GANTC 3 cut(s) 26, 278, 362
HpaII CCGG 4 cut(s) 36, 98, 378, 390
HphI GGTGA 4 cut(s) 70, 193, 346, 401
Hpy166II GTNNAC 2 cut(s) 93, 255
Hpy188I TCNGA 2 cut(s) 18, 264
Hpy188III TCNNGA 2 cut(s) 328, 461
Hpy8I GTNNAC 2 cut(s) 93, 255
Hpy99I CGWCG 3 cut(s) 163, 212, 259
HpyAV CCTTC 3 cut(s) 307, 325, 448
HpyCH4III ACNGT 1 cut(s) 413
HpyCH4IV ACGT 3 cut(s) 62, 228, 257
HpyCH4V TGCA 3 cut(s) 93, 190, 340
HpyF10VI GCNNNNNNNGC 5 cut(s) 38, 153, 212, 346, 349
HpySE526I ACGT 3 cut(s) 62, 228, 257
Hsp92I GRCGYC 2 cut(s) 223, 257
Hsp92II CATG 1 cut(s) 134
HspAI GCGC 2 cut(s) 110, 223
KasI GGCGCC 1 cut(s) 222
Ksp22I TGATCA 1 cut(s) 406
KspI CCGCGG 1 cut(s) 288
Kzo9I GATC 5 cut(s) 141, 165, 198, 324, 406
LguI GCTCTTC 1 cut(s) 422
LmnI GCTCC 1 cut(s) 348
LpnPI CCDG 7 cut(s) 49, 111, 163, 205, 359, 391, 403
Lsp1109I GCAGC 4 cut(s) 19, 59, 352, 419
LweI GCATC 1 cut(s) 327
MaeI CTAG 1 cut(s) 461
MaeII ACGT 3 cut(s) 62, 228, 257
MaeIII GTNAC 2 cut(s) 58, 65
MalI GATC 5 cut(s) 143, 167, 200, 326, 408
MboI GATC 5 cut(s) 141, 165, 198, 324, 406
MboII GAAGA 3 cut(s) 208, 273, 439
MflI RGATCY 1 cut(s) 141
MhlI GDGCHC 1 cut(s) 95
Mly113I GGCGCC 1 cut(s) 223
MlyI GAGTC 2 cut(s) 35, 356
MmeI TCCRAC 2 cut(s) 60, 119
MspA1I CMGCKG 1 cut(s) 287
MspI CCGG 4 cut(s) 36, 98, 378, 390
MspR9I CCNGG 2 cut(s) 99, 379
MvnI CGCG 3 cut(s) 112, 287, 396
MwoI GCNNNNNNNGC 5 cut(s) 38, 153, 212, 346, 349
NarI GGCGCC 1 cut(s) 223
NciI CCSGG 2 cut(s) 99, 379
NcoI CCATGG 1 cut(s) 130
NdeII GATC 5 cut(s) 141, 165, 198, 324, 406
NlaIII CATG 1 cut(s) 134
NlaIV GGNNCC 3 cut(s) 40, 224, 388
NmeAIII GCCGAG 1 cut(s) 393
NmuCI GTSAC 2 cut(s) 58, 65
PciSI GCTCTTC 1 cut(s) 422
PcsI WCGNNNNNNNCGW 1 cut(s) 260
PfeI GAWTC 1 cut(s) 278
PkrI GCNGC 6 cut(s) 34, 74, 289, 342, 351, 434
Ple19I CGATCG 1 cut(s) 168
PleI GAGTC 2 cut(s) 34, 356
PluTI GGCGCC 1 cut(s) 226
PpsI GAGTC 2 cut(s) 34, 356
PspN4I GGNNCC 3 cut(s) 40, 224, 388
PspPI GGNCC 1 cut(s) 375
PstNI CAGNNNCTG 1 cut(s) 346
PsuI RGATCY 1 cut(s) 141
PvuI CGATCG 1 cut(s) 168
SacII CCGCGG 1 cut(s) 288
SalI GTCGAC 1 cut(s) 253
SapI GCTCTTC 1 cut(s) 422
SatI GCNGC 6 cut(s) 33, 73, 288, 341, 350, 433
Sau3AI GATC 5 cut(s) 141, 165, 198, 324, 406
Sau96I GGNCC 1 cut(s) 375
SchI GAGTC 2 cut(s) 35, 356
ScrFI CCNGG 2 cut(s) 99, 379
SduI GDGCHC 1 cut(s) 95
SetI ASST 8 cut(s) 51, 65, 231, 260, 336, 345, 425, 434
SfaNI GCATC 1 cut(s) 327
SfcI CTRYAG 1 cut(s) 444
SfoI GGCGCC 1 cut(s) 224
Sfr303I CCGCGG 1 cut(s) 288
SgrBI CCGCGG 1 cut(s) 288
SinI GGWCC 1 cut(s) 375
SspDI GGCGCC 1 cut(s) 222
SspMI CTAG 1 cut(s) 461
StyD4I CCNGG 2 cut(s) 97, 377
StyI CCWWGG 1 cut(s) 130
TaaI ACNGT 1 cut(s) 413
TaiI ACGT 3 cut(s) 65, 231, 260
TaqI TCGA 5 cut(s) 158, 168, 254, 329, 425
TaqII GACCGA 1 cut(s) 240
TauI GCSGC 2 cut(s) 290, 352
TfiI GAWTC 1 cut(s) 278
TscAI CASTG 1 cut(s) 74
TseFI GTSAC 2 cut(s) 58, 65
TseI GCWGC 4 cut(s) 32, 72, 340, 432
Tsp45I GTSAC 2 cut(s) 58, 65
TspDTI ATGAA 1 cut(s) 197
TspRI CASTG 1 cut(s) 74
VneI GTGCAC 1 cut(s) 91
VpaK11BI GGWCC 1 cut(s) 375
XbaI TCTAGA 1 cut(s) 460
XmiI GTMKAC 1 cut(s) 254
XspI CTAG 1 cut(s) 461
ZraI GACGTC 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.