Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G33680 AT2G33680 AT2G33680 AT2G33680 AT2G33680 AT2G33680 AT2G33680 AT2G33680 |
| fragaria_vesca | FvH4_7g03841 FvH4_7g03850 |
| malus_domestica | MD02G1276700.v1.1 |
| prunus_persica | Prupe.2G043400_v2.0.a1 |
| pyrus_communis | pycom02g23700 |
| rosa_chinensis | RchiOBHm_Chr1g0326811 RchiOBHm_Chr1g0326821 RchiOBHm_Chr1g0327271 RchiOBHm_Chr1g0327321 |
| rosa_laevigata | RLG00000030002 RLG00000030005 RLG00000030054 |
| rosa_multiflora | Rmu_sc0001021.1_g000002 Rmu_sc0003600.1_g000043 Rmu_sc0005038.1_g000015 Rmu_sc0010151.1_g000003 Rmu_sc0010151.1_g000004 Rmu_sc0020365.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00128000 Rroxscaffold_4G00322770 Rroxscaffold_4G00322870 |
| rosa_rugosa | Rorug01G0064900 Rorug01G0065300 Rorug01G0065400 Rorug01G0065500 Rorug01G0065500 |
| rosa_samantha | Rh1AG082500 Rh1AG083100 Rh1BG065600 Rh1BG065900 Rh1BG066000 Rh1CG080500 Rh1DG087500 Rh2AG148500 Rh2AG148600 Rh2BG154000 Rh2DG154200 Rh3CG329400 |
| rosa_wichuraiana | Rw1G006500 Rw1G006530 Rw2G011590 Rw2G011600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 224 |
| AatII | GACGTC | 2 cut(s) | 228, 390 |
| Acc16I | TGCGCA | 1 cut(s) | 339 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 292 |
| AccBSI | CCGCTC | 1 cut(s) | 1837 |
| AccI | GTMKAC | 1 cut(s) | 135 |
| AciI | CCGC | 6 cut(s) | 174, 313, 363, 396, 485, 1837 |
| AclWI | GGATC | 1 cut(s) | 1966 |
| AcoI | YGGCCR | 1 cut(s) | 397 |
| AcsI | RAATTY | 7 cut(s) | 535, 560, 624, 754, 959, 1315, 1556 |
| AcyI | GRCGYC | 2 cut(s) | 225, 387 |
| AdeI | CACNNNGTG | 1 cut(s) | 797 |
| AfaI | GTAC | 4 cut(s) | 29, 613, 1243, 1414 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 82, 292, 1576, 1818 |
| AflIII | ACRYGT | 1 cut(s) | 993 |
| AgeI | ACCGGT | 1 cut(s) | 116 |
| AjnI | CCWGG | 1 cut(s) | 1879 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 185, 217, 1260, 1292 |
| Alw21I | GWGCWC | 3 cut(s) | 910, 1288, 1431 |
| Alw26I | GTCTC | 2 cut(s) | 171, 235 |
| AlwI | GGATC | 1 cut(s) | 1966 |
| AoxI | GGCC | 3 cut(s) | 207, 397, 1567 |
| ApeKI | GCWGC | 2 cut(s) | 365, 1500 |
| ApoI | RAATTY | 7 cut(s) | 535, 560, 624, 754, 959, 1315, 1556 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 616, 648 |
| AsiGI | ACCGGT | 1 cut(s) | 116 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 326 |
| AspLEI | GCGC | 4 cut(s) | 340, 595, 682, 1457 |
| AspS9I | GGNCC | 4 cut(s) | 73, 119, 1568, 1579 |
| AsuHPI | GGTGA | 6 cut(s) | 34, 352, 565, 758, 1879, 1943 |
| AsuII | TTCGAA | 1 cut(s) | 957 |
| AvaII | GGWCC | 3 cut(s) | 73, 119, 1579 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1225, 1258 |
| BanII | GRGCYC | 1 cut(s) | 1431 |
| BbsI | GAAGAC | 1 cut(s) | 193 |
| Bbv12I | GWGCWC | 3 cut(s) | 910, 1288, 1431 |
| BbvI | GCAGC | 2 cut(s) | 377, 1512 |
| BccI | CCATC | 3 cut(s) | 28, 1253, 1319 |
| BceAI | ACGGC | 2 cut(s) | 292, 1596 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 887, 921 |
| BciT130I | CCWGG | 1 cut(s) | 1881 |
| BciVI | GTATCC | 1 cut(s) | 1354 |
| BclI | TGATCA | 1 cut(s) | 1663 |
| BcoDI | GTCTC | 2 cut(s) | 171, 235 |
| BfaI | CTAG | 2 cut(s) | 1179, 1424 |
| BfoI | RGCGCY | 1 cut(s) | 596 |
| BfuI | GTATCC | 1 cut(s) | 1354 |
| BisI | GCNGC | 3 cut(s) | 366, 397, 1501 |
| BlsI | GCNGC | 3 cut(s) | 367, 398, 1502 |
| Bme1390I | CCNGG | 1 cut(s) | 1881 |
| Bme18I | GGWCC | 3 cut(s) | 73, 119, 1579 |
| BmgT120I | GGNCC | 4 cut(s) | 73, 119, 1568, 1579 |
| BmiI | GGNNCC | 3 cut(s) | 121, 280, 1732 |
| BmrFI | CCNGG | 1 cut(s) | 1881 |
| BmsI | GCATC | 8 cut(s) | 490, 709, 1012, 1146, 1338, 1431, 1929, 1951 |
| BpiI | GAAGAC | 1 cut(s) | 193 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1748, 1780 |
| BpmI | CTGGAG | 1 cut(s) | 372 |
| Bpu14I | TTCGAA | 1 cut(s) | 957 |
| BsaAI | YACGTR | 1 cut(s) | 1241 |
| BsaHI | GRCGYC | 2 cut(s) | 225, 387 |
| BsaJI | CCNNGG | 4 cut(s) | 588, 1571, 1812, 1880 |
| BsaWI | WCCGGW | 1 cut(s) | 116 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 266, 296, 1077, 1107, 1722, 1752 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 82, 292, 1576, 1818 |
| Bse118I | RCCGGY | 2 cut(s) | 116, 399 |
| Bse1I | ACTGG | 3 cut(s) | 573, 619, 787 |
| Bse3DI | GCAATG | 2 cut(s) | 138, 1386 |
| BseBI | CCWGG | 1 cut(s) | 1881 |
| BseDI | CCNNGG | 4 cut(s) | 588, 1571, 1812, 1880 |
| BseGI | GGATG | 4 cut(s) | 51, 505, 1353, 1942 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 82, 292, 1576, 1818 |
| BseMI | GCAATG | 2 cut(s) | 138, 1386 |
| BseMII | CTCAG | 6 cut(s) | 38, 116, 275, 309, 614, 1781 |
| BseNI | ACTGG | 3 cut(s) | 573, 619, 787 |
| BseRI | GAGGAG | 3 cut(s) | 115, 271, 1451 |
| BseX3I | CGGCCG | 1 cut(s) | 397 |
| BseXI | GCAGC | 2 cut(s) | 377, 1512 |
| BseYI | CCCAGC | 1 cut(s) | 1616 |
| Bsh1285I | CGRYCG | 1 cut(s) | 400 |
| BshFI | GGCC | 3 cut(s) | 209, 399, 1569 |
| BshTI | ACCGGT | 1 cut(s) | 116 |
| BsiEI | CGRYCG | 1 cut(s) | 400 |
| BsiHKAI | GWGCWC | 3 cut(s) | 910, 1288, 1431 |
| BsiSI | CCGG | 4 cut(s) | 117, 383, 400, 1463 |
| BslFI | GGGAC | 1 cut(s) | 105 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 82, 292, 1576, 1818 |
| BsmAI | GTCTC | 2 cut(s) | 171, 235 |
| BsmBI | CGTCTC | 1 cut(s) | 235 |
| BsmFI | GGGAC | 1 cut(s) | 105 |
| BsmI | GAATGC | 2 cut(s) | 1143, 1381 |
| BsnI | GGCC | 3 cut(s) | 209, 399, 1569 |
| Bsp119I | TTCGAA | 1 cut(s) | 957 |
| Bsp1286I | GDGCHC | 3 cut(s) | 910, 1288, 1431 |
| Bsp143I | GATC | 3 cut(s) | 105, 1663, 1971 |
| BspACI | CCGC | 6 cut(s) | 174, 313, 363, 396, 485, 1837 |
| BspANI | GGCC | 3 cut(s) | 209, 399, 1569 |
| BspCNI | CTCAG | 6 cut(s) | 37, 115, 274, 310, 613, 1780 |
| BspHI | TCATGA | 1 cut(s) | 1966 |
| BspLI | GGNNCC | 3 cut(s) | 121, 280, 1732 |
| BspPI | GGATC | 1 cut(s) | 1966 |
| BspT104I | TTCGAA | 1 cut(s) | 957 |
| BsrBI | CCGCTC | 1 cut(s) | 1837 |
| BsrDI | GCAATG | 2 cut(s) | 138, 1386 |
| BsrFI | RCCGGY | 2 cut(s) | 116, 399 |
| BsrI | ACTGG | 3 cut(s) | 573, 619, 787 |
| BssAI | RCCGGY | 2 cut(s) | 116, 399 |
| BssECI | CCNNGG | 4 cut(s) | 588, 1571, 1812, 1880 |
| BssMI | GATC | 3 cut(s) | 105, 1663, 1971 |
| BssNI | GRCGYC | 2 cut(s) | 225, 387 |
| BssT1I | CCWWGG | 3 cut(s) | 588, 1571, 1812 |
| Bst2UI | CCWGG | 1 cut(s) | 1881 |
| Bst4CI | ACNGT | 4 cut(s) | 32, 62, 1366, 2016 |
| Bst6I | CTCTTC | 2 cut(s) | 543, 1898 |
| BstACI | GRCGYC | 2 cut(s) | 225, 387 |
| BstBAI | YACGTR | 1 cut(s) | 1241 |
| BstBI | TTCGAA | 1 cut(s) | 957 |
| BstC8I | GCNNGC | 6 cut(s) | 311, 315, 401, 405, 1498, 1591 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 80, 1816 |
| BstF5I | GGATG | 4 cut(s) | 51, 505, 1353, 1942 |
| BstH2I | RGCGCY | 1 cut(s) | 596 |
| BstHHI | GCGC | 4 cut(s) | 340, 595, 682, 1457 |
| BstKTI | GATC | 3 cut(s) | 108, 1666, 1974 |
| BstMAI | GTCTC | 2 cut(s) | 171, 235 |
| BstMBI | GATC | 3 cut(s) | 105, 1663, 1971 |
| BstMCI | CGRYCG | 1 cut(s) | 400 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 98, 323, 374, 425, 1987 |
| BstNI | CCWGG | 1 cut(s) | 1881 |
| BstNSI | RCATGY | 3 cut(s) | 313, 997, 1197 |
| BstSCI | CCNGG | 1 cut(s) | 1879 |
| BstV1I | GCAGC | 2 cut(s) | 377, 1512 |
| BstV2I | GAAGAC | 1 cut(s) | 193 |
| BstX2I | RGATCY | 1 cut(s) | 1971 |
| BstYI | RGATCY | 1 cut(s) | 1971 |
| BstZI | CGGCCG | 1 cut(s) | 397 |
| BsuI | GTATCC | 1 cut(s) | 1354 |
| BsuRI | GGCC | 3 cut(s) | 209, 399, 1569 |
| BtsCI | GGATG | 4 cut(s) | 51, 505, 1353, 1942 |
| BtsI | GCAGTG | 1 cut(s) | 645 |
| BtsIMutI | CAGTG | 3 cut(s) | 546, 580, 645 |
| Cac8I | GCNNGC | 6 cut(s) | 311, 315, 401, 405, 1498, 1591 |
| CciI | TCATGA | 1 cut(s) | 1966 |
| CfoI | GCGC | 4 cut(s) | 340, 595, 682, 1457 |
| Cfr10I | RCCGGY | 2 cut(s) | 116, 399 |
| Cfr13I | GGNCC | 4 cut(s) | 73, 119, 1568, 1579 |
| CseI | GACGC | 2 cut(s) | 121, 366 |
| Csp6I | GTAC | 4 cut(s) | 28, 612, 1242, 1413 |
| CspAI | ACCGGT | 1 cut(s) | 116 |
| CviQI | GTAC | 4 cut(s) | 28, 612, 1242, 1413 |
| DpnI | GATC | 3 cut(s) | 107, 1665, 1973 |
| DpnII | GATC | 3 cut(s) | 105, 1663, 1971 |
| DraIII | CACNNNGTG | 1 cut(s) | 797 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 224 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 224 |
| EaeI | YGGCCR | 1 cut(s) | 397 |
| EagI | CGGCCG | 1 cut(s) | 397 |
| Eam1104I | CTCTTC | 2 cut(s) | 543, 1898 |
| EarI | CTCTTC | 2 cut(s) | 543, 1898 |
| Ecl136II | GAGCTC | 1 cut(s) | 1429 |
| EclXI | CGGCCG | 1 cut(s) | 397 |
| Eco130I | CCWWGG | 3 cut(s) | 588, 1571, 1812 |
| Eco24I | GRGCYC | 1 cut(s) | 1431 |
| Eco32I | GATATC | 2 cut(s) | 657, 1386 |
| Eco47I | GGWCC | 3 cut(s) | 73, 119, 1579 |
| Eco52I | CGGCCG | 1 cut(s) | 397 |
| Eco53kI | GAGCTC | 1 cut(s) | 1429 |
| EcoICRI | GAGCTC | 1 cut(s) | 1429 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 80, 1816 |
| EcoO109I | RGGNCCY | 1 cut(s) | 73 |
| EcoRI | GAATTC | 3 cut(s) | 535, 754, 959 |
| EcoRII | CCWGG | 1 cut(s) | 1879 |
| EcoRV | GATATC | 2 cut(s) | 657, 1386 |
| EcoT14I | CCWWGG | 3 cut(s) | 588, 1571, 1812 |
| EcoT22I | ATGCAT | 2 cut(s) | 840, 1944 |
| EcoT38I | GRGCYC | 1 cut(s) | 1431 |
| ErhI | CCWWGG | 3 cut(s) | 588, 1571, 1812 |
| Esp3I | CGTCTC | 1 cut(s) | 235 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 185, 217, 474, 506, 938, 970 |
| FaqI | GGGAC | 1 cut(s) | 105 |
| FauI | CCCGC | 3 cut(s) | 306, 478, 1830 |
| FauNDI | CATATG | 3 cut(s) | 834, 1506, 1992 |
| FbaI | TGATCA | 1 cut(s) | 1663 |
| FblI | GTMKAC | 1 cut(s) | 135 |
| Fnu4HI | GCNGC | 3 cut(s) | 366, 397, 1501 |
| FokI | GGATG | 4 cut(s) | 38, 512, 1360, 1929 |
| FriOI | GRGCYC | 1 cut(s) | 1431 |
| Fsp4HI | GCNGC | 3 cut(s) | 366, 397, 1501 |
| FspAI | RTGCGCAY | 1 cut(s) | 339 |
| FspBI | CTAG | 2 cut(s) | 1179, 1424 |
| FspI | TGCGCA | 1 cut(s) | 339 |
| GlaI | GCGC | 4 cut(s) | 339, 594, 681, 1456 |
| GluI | GCNGC | 3 cut(s) | 366, 397, 1501 |
| GsaI | CCCAGC | 1 cut(s) | 1620 |
| GsuI | CTGGAG | 1 cut(s) | 372 |
| HaeII | RGCGCY | 1 cut(s) | 596 |
| HaeIII | GGCC | 3 cut(s) | 209, 399, 1569 |
| HapII | CCGG | 4 cut(s) | 117, 383, 400, 1463 |
| HgaI | GACGC | 2 cut(s) | 121, 366 |
| HhaI | GCGC | 4 cut(s) | 340, 595, 682, 1457 |
| Hin1I | GRCGYC | 2 cut(s) | 225, 387 |
| Hin6I | GCGC | 4 cut(s) | 338, 593, 680, 1455 |
| HinP1I | GCGC | 4 cut(s) | 338, 593, 680, 1455 |
| HincII | GTYRAC | 2 cut(s) | 157, 991 |
| HindII | GTYRAC | 2 cut(s) | 157, 991 |
| HindIII | AAGCTT | 1 cut(s) | 1113 |
| HinfI | GANTC | 8 cut(s) | 803, 879, 1201, 1257, 1649, 1772, 1846, 1906 |
| HpaII | CCGG | 4 cut(s) | 117, 383, 400, 1463 |
| HphI | GGTGA | 6 cut(s) | 34, 352, 565, 758, 1879, 1943 |
| Hpy166II | GTNNAC | 6 cut(s) | 42, 136, 157, 867, 991, 1579 |
| Hpy188I | TCNGA | 4 cut(s) | 105, 1707, 1851, 1976 |
| Hpy188III | TCNNGA | 6 cut(s) | 454, 911, 1265, 1424, 1769, 1967 |
| Hpy8I | GTNNAC | 6 cut(s) | 42, 136, 157, 867, 991, 1579 |
| Hpy99I | CGWCG | 2 cut(s) | 230, 382 |
| HpyAV | CCTTC | 7 cut(s) | 337, 538, 911, 1142, 1218, 1971, 1990 |
| HpyCH4III | ACNGT | 4 cut(s) | 32, 62, 1366, 2016 |
| HpyCH4IV | ACGT | 5 cut(s) | 225, 387, 740, 1240, 1963 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 98, 323, 374, 425, 1987 |
| HpySE526I | ACGT | 5 cut(s) | 225, 387, 740, 1240, 1963 |
| Hsp92I | GRCGYC | 2 cut(s) | 225, 387 |
| HspAI | GCGC | 4 cut(s) | 338, 593, 680, 1455 |
| KroI | GCCGGC | 1 cut(s) | 399 |
| KroNI | GCCGGC | 1 cut(s) | 401 |
| Ksp22I | TGATCA | 1 cut(s) | 1663 |
| Kzo9I | GATC | 3 cut(s) | 105, 1663, 1971 |
| LmnI | GCTCC | 4 cut(s) | 284, 295, 708, 1730 |
| Lsp1109I | GCAGC | 2 cut(s) | 377, 1512 |
| LweI | GCATC | 8 cut(s) | 490, 709, 1012, 1146, 1338, 1431, 1929, 1951 |
| MaeI | CTAG | 2 cut(s) | 1179, 1424 |
| MaeII | ACGT | 5 cut(s) | 225, 387, 740, 1240, 1963 |
| MaeIII | GTNAC | 1 cut(s) | 685 |
| MalI | GATC | 3 cut(s) | 107, 1665, 1973 |
| MbiI | CCGCTC | 1 cut(s) | 1837 |
| MboI | GATC | 3 cut(s) | 105, 1663, 1971 |
| MboII | GAAGA | 6 cut(s) | 3, 193, 560, 926, 1334, 1915 |
| MfeI | CAATTG | 1 cut(s) | 1275 |
| MflI | RGATCY | 1 cut(s) | 1971 |
| MhlI | GDGCHC | 3 cut(s) | 910, 1288, 1431 |
| MlyI | GAGTC | 4 cut(s) | 888, 1210, 1855, 1915 |
| MmeI | TCCRAC | 3 cut(s) | 856, 1685, 1720 |
| Mph1103I | ATGCAT | 2 cut(s) | 840, 1944 |
| MroNI | GCCGGC | 1 cut(s) | 399 |
| MroXI | GAANNNNTTC | 1 cut(s) | 326 |
| MseI | TTAA | 5 cut(s) | 944, 1046, 1694, 1751, 1986 |
| MspI | CCGG | 4 cut(s) | 117, 383, 400, 1463 |
| MspR9I | CCNGG | 1 cut(s) | 1881 |
| MunI | CAATTG | 1 cut(s) | 1275 |
| Mva1269I | GAATGC | 2 cut(s) | 1143, 1381 |
| MvaI | CCWGG | 1 cut(s) | 1881 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 98, 323, 374, 425, 1987 |
| NaeI | GCCGGC | 1 cut(s) | 401 |
| NdeI | CATATG | 3 cut(s) | 834, 1506, 1992 |
| NdeII | GATC | 3 cut(s) | 105, 1663, 1971 |
| NgoMIV | GCCGGC | 1 cut(s) | 399 |
| NlaIV | GGNNCC | 3 cut(s) | 121, 280, 1732 |
| NsbI | TGCGCA | 1 cut(s) | 339 |
| NsiI | ATGCAT | 2 cut(s) | 840, 1944 |
| NspI | RCATGY | 3 cut(s) | 313, 997, 1197 |
| NspV | TTCGAA | 1 cut(s) | 957 |
| PaeI | GCATGC | 1 cut(s) | 313 |
| PagI | TCATGA | 1 cut(s) | 1966 |
| PciI | ACATGT | 1 cut(s) | 993 |
| PctI | GAATGC | 2 cut(s) | 1143, 1381 |
| PdiI | GCCGGC | 1 cut(s) | 401 |
| PdmI | GAANNNNTTC | 1 cut(s) | 326 |
| PfeI | GAWTC | 4 cut(s) | 803, 1257, 1649, 1772 |
| PflFI | GACNNNGTC | 1 cut(s) | 227 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 292 |
| PinAI | ACCGGT | 1 cut(s) | 116 |
| PkrI | GCNGC | 3 cut(s) | 367, 398, 1502 |
| PleI | GAGTC | 4 cut(s) | 887, 1209, 1854, 1914 |
| PpsI | GAGTC | 4 cut(s) | 887, 1209, 1854, 1914 |
| Ppu21I | YACGTR | 1 cut(s) | 1241 |
| PpuMI | RGGWCCY | 1 cut(s) | 73 |
| PscI | ACATGT | 1 cut(s) | 993 |
| Psp124BI | GAGCTC | 1 cut(s) | 1431 |
| Psp5II | RGGWCCY | 1 cut(s) | 73 |
| Psp6I | CCWGG | 1 cut(s) | 1879 |
| PspFI | CCCAGC | 1 cut(s) | 1616 |
| PspGI | CCWGG | 1 cut(s) | 1879 |
| PspN4I | GGNNCC | 3 cut(s) | 121, 280, 1732 |
| PspPI | GGNCC | 4 cut(s) | 73, 119, 1568, 1579 |
| PspPPI | RGGWCCY | 1 cut(s) | 73 |
| PsuI | RGATCY | 1 cut(s) | 1971 |
| PsyI | GACNNNGTC | 1 cut(s) | 227 |
| RsaI | GTAC | 4 cut(s) | 29, 613, 1243, 1414 |
| RsaNI | GTAC | 4 cut(s) | 28, 612, 1242, 1413 |
| SacI | GAGCTC | 1 cut(s) | 1431 |
| SaqAI | TTAA | 5 cut(s) | 944, 1046, 1694, 1751, 1986 |
| SatI | GCNGC | 3 cut(s) | 366, 397, 1501 |
| Sau3AI | GATC | 3 cut(s) | 105, 1663, 1971 |
| Sau96I | GGNCC | 4 cut(s) | 73, 119, 1568, 1579 |
| SchI | GAGTC | 4 cut(s) | 888, 1210, 1855, 1915 |
| ScrFI | CCNGG | 1 cut(s) | 1881 |
| SduI | GDGCHC | 3 cut(s) | 910, 1288, 1431 |
| SfaNI | GCATC | 8 cut(s) | 490, 709, 1012, 1146, 1338, 1431, 1929, 1951 |
| SfuI | TTCGAA | 1 cut(s) | 957 |
| SinI | GGWCC | 3 cut(s) | 73, 119, 1579 |
| SphI | GCATGC | 1 cut(s) | 313 |
| SsiI | CCGC | 6 cut(s) | 174, 313, 363, 396, 485, 1837 |
| SspMI | CTAG | 2 cut(s) | 1179, 1424 |
| SstI | GAGCTC | 1 cut(s) | 1431 |
| StyD4I | CCNGG | 1 cut(s) | 1879 |
| StyI | CCWWGG | 3 cut(s) | 588, 1571, 1812 |
| TaaI | ACNGT | 4 cut(s) | 32, 62, 1366, 2016 |
| TaiI | ACGT | 5 cut(s) | 228, 390, 743, 1243, 1966 |
| TaqI | TCGA | 3 cut(s) | 204, 957, 1199 |
| TauI | GCSGC | 1 cut(s) | 399 |
| TfiI | GAWTC | 4 cut(s) | 803, 1257, 1649, 1772 |
| Tru1I | TTAA | 5 cut(s) | 944, 1046, 1694, 1751, 1986 |
| Tru9I | TTAA | 5 cut(s) | 944, 1046, 1694, 1751, 1986 |
| TscAI | CASTG | 3 cut(s) | 546, 580, 645 |
| TseI | GCWGC | 2 cut(s) | 365, 1500 |
| TspGWI | ACGGA | 1 cut(s) | 1116 |
| TspRI | CASTG | 3 cut(s) | 546, 580, 645 |
| Tth111I | GACNNNGTC | 1 cut(s) | 227 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 292 |
| VpaK11BI | GGWCC | 3 cut(s) | 73, 119, 1579 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 80, 1816 |
| XapI | RAATTY | 7 cut(s) | 535, 560, 624, 754, 959, 1315, 1556 |
| XbaI | TCTAGA | 1 cut(s) | 1423 |
| XceI | RCATGY | 3 cut(s) | 313, 997, 1197 |
| XmiI | GTMKAC | 1 cut(s) | 135 |
| XmnI | GAANNNNTTC | 1 cut(s) | 326 |
| XspI | CTAG | 2 cut(s) | 1179, 1424 |
| ZraI | GACGTC | 2 cut(s) | 226, 388 |
| Zsp2I | ATGCAT | 2 cut(s) | 840, 1944 |