Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001580

Physical Location & Seq

Genomic Coordinates Reverse (-)

13400336 .. 13402447

Gene Structure 2112 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G006530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2112 bp

ATGAGTCTTTCTTGTCACTCCCGGTCCTTGTTCTCCACTCTCCAACACTACACTCGTCTAAAGGACCTCCAAAGAGGCAAACCCCTCCACGCTCACATCATCACAACCGGTTCCTCCTCTTGCGTCTACATTGCCAATGCCCTCATCAACCTCTACGTCAAATCCGGACACTTACACGCAGCCCACCTCGTATTCGAAACCATACCTCACAAAGACGTGGTCTCATGGAACACCCTCATCAACGGCTACTCTCAACAGGGCTTCAGATACTCCTCGTTTGTGTTGGACCTTTTTCGACGCATGCGGGGTGAGAACGCCTCCCCGGATTCGCACACTTTTGCTGGAGTTTGTAATGCTGCTTCATGTGTAAACGATGTTTTGGGTGGCGGGCAAGTTCACACGGTTGCTGTTAAGGCTGTGGGCTGTTTTGATGTGTTTGTTGGAAGCTCTCTTGTTAATATGTATTGTAAGATGGGTCTTGTGGGGAATGCACGTAAGGTGTTTGATGAAATGCTTGTGAGGAATTCGGTTACTTGGGCTACTATGATTTCTGGGTATGCAATGCAACAGTTGGGTGCAAATGCGTTCGAGGTTTTTATGCTGCTGCGTAGGAGTGAGGAGAGGGAAGAAGAGAATGAGTTTGTTTTGACCGCGGTTCTTAGTGGTTTGGGGGTTCCTGAATTTGTTGATACGGGCAAGCAGATTCATTGTCTTGCGGTGAAAAATGGGCTGATGTGTAATGTTTCTGTTGGGAATGCGCTTGTCACGATGTATGCGAAATGTGGGAGTTTAGATGATGCGCTTAGAACTTTTGAGCTGTCTGGCGATAAGAATTCTATCACATGGTCTGCGATGATATCTGGTTTTGCGCAGAGTGGGGATTCGGAAAAGGCTTTGGACTTGTTTTCAGACATGCATTTTTCTGGGATAGTGCCCACTGAGTTTGCGTTTGGTGGGGTCATTAGTGCCTGTAGTGACATTAATGCTCTTGAACAAGGAAAGCAAGTGCATAGTTATCTGCTCAAGTTGGGATTTGAATTCCAATTATATATAATTTCAGCTTTGGTTGACATGTATGGCAAATGTGGTAGCGTTAGTGATGCTCGGAAAGGGTTTGATTGTATAAAAGAGCCTGATATTGTTCTTTGGAGTTCTATGATCGGAGGGTATGTACAAAATGGGGAGAATGAAGCTGCTTTGAGTTTATATTGTAGAATGCAGAGGGAGGGATTTTTGCCTAATGAACTTACTATGGCCAGTCTCCTAAAAGCATGTTCAAGCCTATGTGCTTTTGAACAAGGAAAGCAAATCCATGCGACTACCATTAAGTATGGATTCAGTTTTGAATTTCCAATTGGAAGTTCTCTTTTCACTATGTATGCAAAGTGTGGGAATTTGGAAGATGGGAAGTTAGTGTTTAGGAGAATGCCTACGAGAGATGTAGTGTCTTGGAATGCAATGATATCTGGGCTTTCACAAAATGGGCAGGGTAACGAAGCTCTAGAGCTCTTTGAGGAGATGCGATTGGGTGGTACAGAGCCGGATTACATTACATTTGTGAATGTTCTCTCTGCTTGCAGCCATATGGGATCTGTGGAGAGAGGATGGATTTATTTGAAGATGATGTCTAATGAATTTGGCATTGCCCCAGGGGTGGAGCATTATGCTTGCATGGTTGATGTCCTGAGCCGAGCTGGGAAGTTAGATGAAGCCAAAGATTTCATAGAGTCAGCAACTATTGATCATGGCATCTGTTTATGGCGTATTTTATTAAGTGCTTGTCGAAACTATCGGAATTATGAATTGGGAGCATATGCCGGAGAGAAGTTAATGGAGTTAGGTTCACTAGAATCTCAGTCTTACGTGCTATTGTCAAGCATCTATACTTCCCTGGGTAGGCGGGAAGATGTTGAGCGGGTAAGGAGGATGATGAAACTTCGAGGGGTGAGTAAGAAGCCTGGCTGTAGCTGGATTGAGTTGAAGAGTCAGGTTCATGTGTTTGTTGTTGGTGATTTGATGCATCCACAGATCGATAGTATAGGTGTTGAGATCCGAAGGTTAATCAAGCATATGAAGGATGAAGGATACCAACCTTCCTCTATCACTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

703

Amino Acids

77.78

Weight (kDa)

6.22

Isoelectric Point (pI)

42.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	71 - 114	4.3e-06	PPR repeat family
PPR_2	PF13041	277 - 325	1.3e-09	PPR repeat family
PPR	PF01535	280 - 310	9e-08	PPR repeat
PPR_2	PF13041	378 - 426	1.1e-11	PPR repeat family
PPR	PF01535	381 - 411	4.2e-07	PPR repeat
PPR_2	PF13041	479 - 527	5.7e-13	PPR repeat family
PPR_1	PF12854	480 - 508	1.5e-06	PPR repeat
PPR	PF01535	482 - 508	4.3e-09	PPR repeat
E_motif	PF20431	597 - 659	9.8e-20	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0001580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33680 AT2G33680 AT2G33680 AT2G33680 AT2G33680 AT2G33680 AT2G33680 AT2G33680
fragaria_vesca	FvH4_7g03841 FvH4_7g03850
malus_domestica	MD02G1276700.v1.1
prunus_persica	Prupe.2G043400_v2.0.a1
pyrus_communis	pycom02g23700
rosa_chinensis	RchiOBHm_Chr1g0326811 RchiOBHm_Chr1g0326821 RchiOBHm_Chr1g0327271 RchiOBHm_Chr1g0327321
rosa_laevigata	RLG00000030002 RLG00000030005 RLG00000030054
rosa_multiflora	Rmu_sc0001021.1_g000002 Rmu_sc0003600.1_g000043 Rmu_sc0005038.1_g000015 Rmu_sc0010151.1_g000003 Rmu_sc0010151.1_g000004 Rmu_sc0020365.1_g000001
rosa_roxburghii	Rroxscaffold_2G00128000 Rroxscaffold_4G00322770 Rroxscaffold_4G00322870
rosa_rugosa	Rorug01G0064900 Rorug01G0065300 Rorug01G0065400 Rorug01G0065500 Rorug01G0065500
rosa_samantha	Rh1AG082500 Rh1AG083100 Rh1BG065600 Rh1BG065900 Rh1BG066000 Rh1CG080500 Rh1DG087500 Rh2AG148500 Rh2AG148600 Rh2BG154000 Rh2DG154200 Rh3CG329400
rosa_wichuraiana	Rw1G006500 Rw1G006530 Rw2G011590 Rw2G011600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	870
AccBSI	CCGCTC	1 cut(s)	1915
AccI	GTMKAC	1 cut(s)	126
AccII	CGCG	1 cut(s)	653
AccIII	TCCGGA	1 cut(s)	164
AciI	CCGC	7 cut(s)	304, 387, 651, 653, 716, 1900, 1915
AclWI	GGATC	2 cut(s)	1597, 2044
AcoI	YGGCCR	1 cut(s)	1254
AcsI	RAATTY	7 cut(s)	523, 680, 832, 1037, 1346, 1393, 1634
AcuI	CTGAAG	1 cut(s)	247
AfaI	GTAC	2 cut(s)	1173, 1534
AfiI	CCNNNNNNNGG	2 cut(s)	1654, 1896
AflIII	ACRYGT	1 cut(s)	1071
AgeI	ACCGGT	1 cut(s)	107
AgsI	TTSAA	7 cut(s)	992, 1037, 1278, 1295, 1346, 1618, 1981
AjiI	CACGTC	1 cut(s)	217
AjnI	CCWGG	3 cut(s)	1648, 1890, 1957
AjuI	GAANNNNNNNTTGG	6 cut(s)	1338, 1345, 1370, 1377, 1787, 1819
AluBI	AGCT	8 cut(s)	447, 817, 1061, 1193, 1499, 1507, 1694, 1968
AluI	AGCT	8 cut(s)	447, 817, 1061, 1193, 1499, 1507, 1694, 1968
Alw21I	GWGCWC	1 cut(s)	1509
Alw26I	GTCTC	2 cut(s)	226, 1265
AlwI	GGATC	2 cut(s)	1597, 2044
Aor13HI	TCCGGA	1 cut(s)	164
AoxI	GGCC	1 cut(s)	1254
ApeKI	GCWGC	6 cut(s)	179, 356, 601, 604, 1193, 1578
ApoI	RAATTY	7 cut(s)	523, 680, 832, 1037, 1346, 1393, 1634
ArsI	GACNNNNNNTTYG	2 cut(s)	204, 236
AseI	ATTAAT	1 cut(s)	981
AsiGI	ACCGGT	1 cut(s)	107
AspLEI	GCGC	3 cut(s)	760, 802, 871
AspS9I	GGNCC	3 cut(s)	24, 64, 286
AsuC2I	CCSGG	2 cut(s)	22, 323
AsuHPI	GGTGA	4 cut(s)	320, 730, 1957, 2021
AsuII	TTCGAA	1 cut(s)	195
AvaII	GGWCC	3 cut(s)	24, 64, 286
BaeGI	GKGCMC	1 cut(s)	936
BalI	TGGCCA	1 cut(s)	1256
BanII	GRGCYC	1 cut(s)	1509
BarI	GAAGNNNNNNTAC	2 cut(s)	343, 375
Bbv12I	GWGCWC	1 cut(s)	1509
BbvI	GCAGC	6 cut(s)	191, 343, 588, 591, 1180, 1590
BccI	CCATC	3 cut(s)	466, 1397, 1599
BceAI	ACGGC	1 cut(s)	259
BciT130I	CCWGG	3 cut(s)	1650, 1892, 1959
BciVI	GTATCC	1 cut(s)	2078
BclI	TGATCA	1 cut(s)	1741
BcnI	CCSGG	2 cut(s)	22, 323
BcoDI	GTCTC	2 cut(s)	226, 1265
BfaI	CTAG	2 cut(s)	1502, 1847
BfmI	CTRYAG	2 cut(s)	970, 1963
BfuI	GTATCC	1 cut(s)	2078
BisI	GCNGC	6 cut(s)	180, 357, 602, 605, 1194, 1579
BlsI	GCNGC	6 cut(s)	181, 358, 603, 606, 1195, 1580
Bme1390I	CCNGG	5 cut(s)	22, 323, 1650, 1892, 1959
Bme18I	GGWCC	3 cut(s)	24, 64, 286
BmgBI	CACGTC	1 cut(s)	217
BmgT120I	GGNCC	3 cut(s)	24, 64, 286
BmiI	GGNNCC	2 cut(s)	112, 675
BmrFI	CCNGG	5 cut(s)	22, 323, 1650, 1892, 1959
BmsI	GCATC	7 cut(s)	787, 1090, 1509, 1758, 1887, 2007, 2029
BplI	GAGNNNNNCTC	2 cut(s)	302, 334
BpmI	CTGGAG	1 cut(s)	363
Bpu10I	CCTNAGC	1 cut(s)	1685
Bpu14I	TTCGAA	1 cut(s)	195
BpuEI	CTTGAG	1 cut(s)	1007
BpuMI	CCSGG	2 cut(s)	22, 323
Bsa29I	ATCGAT	1 cut(s)	2031
BsaAI	YACGTR	2 cut(s)	494, 1864
BsaI	GGTCTC	1 cut(s)	226
BsaJI	CCNNGG	6 cut(s)	321, 651, 1648, 1649, 1890, 1891
BsaWI	WCCGGW	2 cut(s)	107, 164
BsaXI	ACNNNNNCTCC	2 cut(s)	1155, 1185
Bsc4I	CCNNNNNNNGG	2 cut(s)	1654, 1896
Bse118I	RCCGGY	1 cut(s)	107
Bse1I	ACTGG	1 cut(s)	1257
Bse3DI	GCAATG	4 cut(s)	129, 567, 1464, 1641
BseAI	TCCGGA	1 cut(s)	164
BseBI	CCWGG	3 cut(s)	1650, 1892, 1959
BseCI	ATCGAT	1 cut(s)	2031
BseDI	CCNNGG	6 cut(s)	321, 651, 1648, 1649, 1890, 1891
BseGI	GGATG	4 cut(s)	1610, 1932, 2020, 2083
BseLI	CCNNNNNNNGG	2 cut(s)	1654, 1896
BseMI	GCAATG	4 cut(s)	129, 567, 1464, 1641
BseMII	CTCAG	3 cut(s)	930, 1676, 1868
BseNI	ACTGG	1 cut(s)	1257
BseRI	GAGGAG	4 cut(s)	106, 262, 632, 1529
BseSI	GKGCMC	1 cut(s)	936
BseXI	GCAGC	6 cut(s)	191, 343, 588, 591, 1180, 1590
BseYI	CCCAGC	1 cut(s)	1694
Bsh1236I	CGCG	1 cut(s)	653
BshFI	GGCC	1 cut(s)	1256
BshTI	ACCGGT	1 cut(s)	107
BshVI	ATCGAT	1 cut(s)	2031
BsiHKAI	GWGCWC	1 cut(s)	1509
BsiSI	CCGG	6 cut(s)	22, 108, 165, 323, 1541, 1818
BslI	CCNNNNNNNGG	2 cut(s)	1654, 1896
BsmAI	GTCTC	2 cut(s)	226, 1265
BsmI	GAATGC	5 cut(s)	493, 760, 1221, 1431, 1459
BsnI	GGCC	1 cut(s)	1256
Bso31I	GGTCTC	1 cut(s)	226
Bsp119I	TTCGAA	1 cut(s)	195
Bsp1286I	GDGCHC	2 cut(s)	936, 1509
Bsp13I	TCCGGA	1 cut(s)	164
Bsp1407I	TGTACA	1 cut(s)	1171
Bsp143I	GATC	5 cut(s)	1158, 1589, 1741, 2028, 2049
BspACI	CCGC	7 cut(s)	304, 387, 651, 653, 716, 1900, 1915
BspANI	GGCC	1 cut(s)	1256
BspCNI	CTCAG	3 cut(s)	931, 1677, 1867
BspDI	ATCGAT	1 cut(s)	2031
BspEI	TCCGGA	1 cut(s)	164
BspFNI	CGCG	1 cut(s)	653
BspLI	GGNNCC	2 cut(s)	112, 675
BspPI	GGATC	2 cut(s)	1597, 2044
BspT104I	TTCGAA	1 cut(s)	195
BspTNI	GGTCTC	1 cut(s)	226
BsrBI	CCGCTC	1 cut(s)	1915
BsrDI	GCAATG	4 cut(s)	129, 567, 1464, 1641
BsrFI	RCCGGY	1 cut(s)	107
BsrGI	TGTACA	1 cut(s)	1171
BsrI	ACTGG	1 cut(s)	1257
BssAI	RCCGGY	1 cut(s)	107
BssECI	CCNNGG	6 cut(s)	321, 651, 1648, 1649, 1890, 1891
BssMI	GATC	5 cut(s)	1158, 1589, 1741, 2028, 2049
Bst2UI	CCWGG	3 cut(s)	1650, 1892, 1959
Bst4CI	ACNGT	2 cut(s)	403, 570
Bst6I	CTCTTC	2 cut(s)	624, 1976
BstAUI	TGTACA	1 cut(s)	1171
BstBAI	YACGTR	2 cut(s)	494, 1864
BstBI	TTCGAA	1 cut(s)	195
BstC8I	GCNNGC	5 cut(s)	302, 389, 698, 1576, 1669
BstDEI	CTNAG	5 cut(s)	659, 803, 939, 1685, 1854
BstDSI	CCRYGG	1 cut(s)	651
BstF5I	GGATG	4 cut(s)	1610, 1932, 2020, 2083
BstFNI	CGCG	1 cut(s)	653
BstHHI	GCGC	3 cut(s)	760, 802, 871
BstKTI	GATC	5 cut(s)	1161, 1592, 1744, 2031, 2052
BstMAI	GTCTC	2 cut(s)	226, 1265
BstMBI	GATC	5 cut(s)	1158, 1589, 1741, 2028, 2049
BstMWI	GCNNNNNNNGC	1 cut(s)	413
BstNI	CCWGG	3 cut(s)	1650, 1892, 1959
BstNSI	RCATGY	4 cut(s)	304, 916, 1075, 1275
BstSCI	CCNGG	5 cut(s)	20, 321, 1648, 1890, 1957
BstSFI	CTRYAG	2 cut(s)	970, 1963
BstSLI	GKGCMC	1 cut(s)	936
BstUI	CGCG	1 cut(s)	653
BstV1I	GCAGC	6 cut(s)	191, 343, 588, 591, 1180, 1590
BstX2I	RGATCY	2 cut(s)	1589, 2049
BstYI	RGATCY	2 cut(s)	1589, 2049
Bsu15I	ATCGAT	1 cut(s)	2031
BsuI	GTATCC	1 cut(s)	2078
BsuRI	GGCC	1 cut(s)	1256
BsuTUI	ATCGAT	1 cut(s)	2031
BtgI	CCRYGG	1 cut(s)	651
BtgZI	GCGATG	1 cut(s)	866
BtrI	CACGTC	1 cut(s)	217
BtsCI	GGATG	4 cut(s)	1610, 1932, 2020, 2083
BtsIMutI	CAGTG	1 cut(s)	936
Cac8I	GCNNGC	5 cut(s)	302, 389, 698, 1576, 1669
CfoI	GCGC	3 cut(s)	760, 802, 871
Cfr10I	RCCGGY	1 cut(s)	107
Cfr13I	GGNCC	3 cut(s)	24, 64, 286
Cfr42I	CCGCGG	1 cut(s)	654
ClaI	ATCGAT	1 cut(s)	2031
CseI	GACGC	2 cut(s)	112, 306
Csp6I	GTAC	2 cut(s)	1172, 1533
CspAI	ACCGGT	1 cut(s)	107
CspCI	CAANNNNNGTGG	2 cut(s)	925, 960
CviQI	GTAC	2 cut(s)	1172, 1533
DdeI	CTNAG	5 cut(s)	659, 803, 939, 1685, 1854
DpnI	GATC	5 cut(s)	1160, 1591, 1743, 2030, 2051
DpnII	GATC	5 cut(s)	1158, 1589, 1741, 2028, 2049
EaeI	YGGCCR	1 cut(s)	1254
Eam1104I	CTCTTC	2 cut(s)	624, 1976
EarI	CTCTTC	2 cut(s)	624, 1976
Ecl136II	GAGCTC	1 cut(s)	1507
Eco24I	GRGCYC	1 cut(s)	1509
Eco31I	GGTCTC	1 cut(s)	226
Eco32I	GATATC	2 cut(s)	858, 1464
Eco47I	GGWCC	3 cut(s)	24, 64, 286
Eco53kI	GAGCTC	1 cut(s)	1507
Eco57I	CTGAAG	1 cut(s)	247
EcoICRI	GAGCTC	1 cut(s)	1507
EcoO109I	RGGNCCY	1 cut(s)	64
EcoRI	GAATTC	3 cut(s)	523, 832, 1037
EcoRII	CCWGG	3 cut(s)	1648, 1890, 1957
EcoRV	GATATC	2 cut(s)	858, 1464
EcoT22I	ATGCAT	2 cut(s)	918, 2022
EcoT38I	GRGCYC	1 cut(s)	1509
FauI	CCCGC	4 cut(s)	297, 380, 1893, 1908
FauNDI	CATATG	3 cut(s)	1584, 1813, 2070
FbaI	TGATCA	1 cut(s)	1741
FblI	GTMKAC	1 cut(s)	126
Fnu4HI	GCNGC	6 cut(s)	180, 357, 602, 605, 1194, 1579
FokI	GGATG	4 cut(s)	1617, 1939, 2007, 2090
FriOI	GRGCYC	1 cut(s)	1509
Fsp4HI	GCNGC	6 cut(s)	180, 357, 602, 605, 1194, 1579
FspBI	CTAG	2 cut(s)	1502, 1847
FspI	TGCGCA	1 cut(s)	870
GlaI	GCGC	3 cut(s)	759, 801, 870
GluI	GCNGC	6 cut(s)	180, 357, 602, 605, 1194, 1579
GsaI	CCCAGC	1 cut(s)	1698
GsuI	CTGGAG	1 cut(s)	363
HaeIII	GGCC	1 cut(s)	1256
HapII	CCGG	6 cut(s)	22, 108, 165, 323, 1541, 1818
HgaI	GACGC	2 cut(s)	112, 306
HhaI	GCGC	3 cut(s)	760, 802, 871
Hin6I	GCGC	3 cut(s)	758, 800, 869
HinP1I	GCGC	3 cut(s)	758, 800, 869
HincII	GTYRAC	1 cut(s)	1069
HindII	GTYRAC	1 cut(s)	1069
HinfI	GANTC	8 cut(s)	4, 326, 703, 881, 1335, 1727, 1850, 1984
HpaII	CCGG	6 cut(s)	22, 108, 165, 323, 1541, 1818
HphI	GGTGA	4 cut(s)	320, 730, 1957, 2021
Hpy166II	GTNNAC	5 cut(s)	127, 370, 397, 1069, 1844
Hpy188I	TCNGA	7 cut(s)	266, 886, 910, 1107, 1163, 1794, 2054
Hpy188III	TCNNGA	6 cut(s)	165, 677, 766, 989, 1502, 1684
Hpy8I	GTNNAC	5 cut(s)	127, 370, 397, 1069, 1844
Hpy99I	CGWCG	1 cut(s)	300
HpyAV	CCTTC	4 cut(s)	2049, 2068, 2075, 2103
HpyCH4III	ACNGT	2 cut(s)	403, 570
HpyCH4IV	ACGT	4 cut(s)	156, 216, 493, 1863
HpyF10VI	GCNNNNNNNGC	1 cut(s)	413
HpyF3I	CTNAG	5 cut(s)	659, 803, 939, 1685, 1854
HpySE526I	ACGT	4 cut(s)	156, 216, 493, 1863
HspAI	GCGC	3 cut(s)	758, 800, 869
Kpn2I	TCCGGA	1 cut(s)	164
Ksp22I	TGATCA	1 cut(s)	1741
KspI	CCGCGG	1 cut(s)	654
Kzo9I	GATC	5 cut(s)	1158, 1589, 1741, 2028, 2049
LmnI	GCTCC	2 cut(s)	1657, 1808
Lsp1109I	GCAGC	6 cut(s)	191, 343, 588, 591, 1180, 1590
LweI	GCATC	7 cut(s)	787, 1090, 1509, 1758, 1887, 2007, 2029
MaeI	CTAG	2 cut(s)	1502, 1847
MaeII	ACGT	4 cut(s)	156, 216, 493, 1863
MaeIII	GTNAC	5 cut(s)	14, 529, 763, 974, 1490
MalI	GATC	5 cut(s)	1160, 1591, 1743, 2030, 2051
MbiI	CCGCTC	1 cut(s)	1915
MboI	GATC	5 cut(s)	1158, 1589, 1741, 2028, 2049
MboII	GAAGA	6 cut(s)	638, 641, 1412, 1630, 1916, 1993
MfeI	CAATTG	1 cut(s)	1353
MflI	RGATCY	2 cut(s)	1589, 2049
MhlI	GDGCHC	2 cut(s)	936, 1509
MlsI	TGGCCA	1 cut(s)	1256
MluNI	TGGCCA	1 cut(s)	1256
MlyI	GAGTC	3 cut(s)	13, 1736, 1993
MmeI	TCCRAC	3 cut(s)	67, 264, 421
Mox20I	TGGCCA	1 cut(s)	1256
Mph1103I	ATGCAT	2 cut(s)	918, 2022
MroI	TCCGGA	1 cut(s)	164
MscI	TGGCCA	1 cut(s)	1256
MseI	TTAA	7 cut(s)	411, 456, 981, 1326, 1772, 1829, 2060
Msp20I	TGGCCA	1 cut(s)	1256
MspA1I	CMGCKG	1 cut(s)	653
MspI	CCGG	6 cut(s)	22, 108, 165, 323, 1541, 1818
MspR9I	CCNGG	5 cut(s)	22, 323, 1650, 1892, 1959
MunI	CAATTG	1 cut(s)	1353
Mva1269I	GAATGC	5 cut(s)	493, 760, 1221, 1431, 1459
MvaI	CCWGG	3 cut(s)	1650, 1892, 1959
MvnI	CGCG	1 cut(s)	653
MwoI	GCNNNNNNNGC	1 cut(s)	413
NciI	CCSGG	2 cut(s)	22, 323
NdeI	CATATG	3 cut(s)	1584, 1813, 2070
NdeII	GATC	5 cut(s)	1158, 1589, 1741, 2028, 2049
NlaIV	GGNNCC	2 cut(s)	112, 675
NmeAIII	GCCGAG	1 cut(s)	1715
NmuCI	GTSAC	3 cut(s)	14, 763, 974
NsbI	TGCGCA	1 cut(s)	870
NsiI	ATGCAT	2 cut(s)	918, 2022
NspI	RCATGY	4 cut(s)	304, 916, 1075, 1275
NspV	TTCGAA	1 cut(s)	195
PaeI	GCATGC	1 cut(s)	304
PasI	CCCWGGG	2 cut(s)	1649, 1891
PciI	ACATGT	1 cut(s)	1071
PcsI	WCGNNNNNNNCGW	1 cut(s)	773
PctI	GAATGC	5 cut(s)	493, 760, 1221, 1431, 1459
PfeI	GAWTC	5 cut(s)	326, 703, 881, 1335, 1850
PflFI	GACNNNGTC	1 cut(s)	218
PinAI	ACCGGT	1 cut(s)	107
PkrI	GCNGC	6 cut(s)	181, 358, 603, 606, 1195, 1580
PleI	GAGTC	3 cut(s)	12, 1735, 1992
PpsI	GAGTC	3 cut(s)	12, 1735, 1992
Ppu21I	YACGTR	2 cut(s)	494, 1864
PpuMI	RGGWCCY	1 cut(s)	64
PscI	ACATGT	1 cut(s)	1071
PshBI	ATTAAT	1 cut(s)	981
Psp124BI	GAGCTC	1 cut(s)	1509
Psp5II	RGGWCCY	1 cut(s)	64
Psp6I	CCWGG	3 cut(s)	1648, 1890, 1957
PspFI	CCCAGC	1 cut(s)	1694
PspGI	CCWGG	3 cut(s)	1648, 1890, 1957
PspN4I	GGNNCC	2 cut(s)	112, 675
PspPI	GGNCC	3 cut(s)	24, 64, 286
PspPPI	RGGWCCY	1 cut(s)	64
PsuI	RGATCY	2 cut(s)	1589, 2049
PsyI	GACNNNGTC	1 cut(s)	218
RsaI	GTAC	2 cut(s)	1173, 1534
RsaNI	GTAC	2 cut(s)	1172, 1533
SacI	GAGCTC	1 cut(s)	1509
SacII	CCGCGG	1 cut(s)	654
SaqAI	TTAA	7 cut(s)	411, 456, 981, 1326, 1772, 1829, 2060
SatI	GCNGC	6 cut(s)	180, 357, 602, 605, 1194, 1579
Sau3AI	GATC	5 cut(s)	1158, 1589, 1741, 2028, 2049
Sau96I	GGNCC	3 cut(s)	24, 64, 286
SchI	GAGTC	3 cut(s)	13, 1736, 1993
ScrFI	CCNGG	5 cut(s)	22, 323, 1650, 1892, 1959
SduI	GDGCHC	2 cut(s)	936, 1509
SfaNI	GCATC	7 cut(s)	787, 1090, 1509, 1758, 1887, 2007, 2029
SfcI	CTRYAG	2 cut(s)	970, 1963
Sfr303I	CCGCGG	1 cut(s)	654
SfuI	TTCGAA	1 cut(s)	195
SgrBI	CCGCGG	1 cut(s)	654
SinI	GGWCC	3 cut(s)	24, 64, 286
SmlI	CTYRAG	1 cut(s)	1022
SmoI	CTYRAG	1 cut(s)	1022
SphI	GCATGC	1 cut(s)	304
SsiI	CCGC	7 cut(s)	304, 387, 651, 653, 716, 1900, 1915
SspMI	CTAG	2 cut(s)	1502, 1847
SstI	GAGCTC	1 cut(s)	1509
StyD4I	CCNGG	5 cut(s)	20, 321, 1648, 1890, 1957
TaaI	ACNGT	2 cut(s)	403, 570
TaiI	ACGT	4 cut(s)	159, 219, 496, 1866
TaqI	TCGA	6 cut(s)	195, 295, 588, 1783, 1939, 2031
TatI	WGTACW	1 cut(s)	1171
TfiI	GAWTC	5 cut(s)	326, 703, 881, 1335, 1850
Tru1I	TTAA	7 cut(s)	411, 456, 981, 1326, 1772, 1829, 2060
Tru9I	TTAA	7 cut(s)	411, 456, 981, 1326, 1772, 1829, 2060
TscAI	CASTG	1 cut(s)	943
TseFI	GTSAC	3 cut(s)	14, 763, 974
TseI	GCWGC	6 cut(s)	179, 356, 601, 604, 1193, 1578
Tsp45I	GTSAC	3 cut(s)	14, 763, 974
TspRI	CASTG	1 cut(s)	943
Tth111I	GACNNNGTC	1 cut(s)	218
VpaK11BI	GGWCC	3 cut(s)	24, 64, 286
VspI	ATTAAT	1 cut(s)	981
XapI	RAATTY	7 cut(s)	523, 680, 832, 1037, 1346, 1393, 1634
XbaI	TCTAGA	1 cut(s)	1501
XceI	RCATGY	4 cut(s)	304, 916, 1075, 1275
XmiI	GTMKAC	1 cut(s)	126
XspI	CTAG	2 cut(s)	1502, 1847
Zsp2I	ATGCAT	2 cut(s)	918, 2022

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.