Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0001580

Physical Location & Seq

Genomic Coordinates Reverse (-)

21847660 .. 21849786

Gene Structure 2127 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g23700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2127 bp

ATGAGTCTGACTTCGCAGCTTCCATCTCAGTACCGGCCCCTGTTCGCTGCCGTCACCCAATACGCCCGCCAAAAGGACCTCCAAAAGGGTAAGTCACTCCACGCTCATTTAATCAAAGCCGGTTCCATATCTTGCGTATACATCGCCAACGCCGTCGTCAACCTCTACGCCAAATGCGGCAACTTGCCCGGAGCCCATCTTGTGTTTGATGCCATTCCCGAGAAGGACGTCGTCTCCTGGAACTCCCTCATCAATGGCTACTCCCAGCAGGGTCTCCGAGCCTCCTCCCTCGTCGTTGTCGAGCTTTTTCGGCGCATGCGGGCGGAGAACACGTTCCCTAATGCCCACACTTTTTCCGGCGTCTTCACGGCGGCGTCCAATGTGTCGGACGTTTCTTGCGGCCGGCAAGTTCACGCGCTTGCTACCAAAGCTGCCAGCTTTTATGATGTGTTTGTTGGGAGTTCTCTTTTGAATATGTATTGTAAAGCGGGTCTTGTGTTGGATGCACGTAAGGTGTTTGATAGAATGCTCGAGAGGAATTCAGTTTCTTGGGCGACTATGATTTCTGGGTATGCAATGCAGCGGATGGCTGGGGATGCGTTGGCGCTTTTCGGGATGATGCGTAGGGATGTGGAGAAGGAAGAAGAGAATGAATTTGTTTTGACGAGTGTTCTTAGTGCGTTGGCGCTTCCTGAGTTTGTTGATACCGGTAAGCAAATTCATTGTCTTTCAGTGAAAGACGGGTTGATAGGTTTTGTTTCTGTTGAGAATGCGCTTGTAACCATGTATGCGAAATGTGGGAGCTTAGATGATGCACTTAGAACTTTTAAGTTGTCTGGTGATAAGAATTCTATCACATGGTCAGCAATGATAACTGGTTTTGCACAAAGTGGGGATTCCCAAAAGGCTCTGGACTTGTTTTCACATATGCATTTTGCTGGGGTTATCCCGAGTGAGTTCACTTTTGTTGGAGTCATCAATGCTTGTAGTGACATCGGTGCTCTTGAAGAAGGAAGAAAAATTCATAGCTATTCATTAAAGATGGGTTTCGAATTCCAAATATATATAATGACAGCTTTGGTTGACATGTATGCCAAATGTGGTAGCGTTAGTGATGCCCGTAAGGGGTTTGATTATTTGAAAGAACCTGATATTGTTCTTTGGACTTCAATGATTGGAGGGTATGTGCAAAATGGGGAGAATGAAGCTGCTTTGAGTTTGTATTGCAGAATGCAGAGGGAGGGAATGATGCCTAATGAACTAACTATGGCTAGTGTCCTCAAAGCATGTTCGAGTCTAAGTGCTTTTGAACAAGGGAAGCAAATCCATGCCCGTACTGTCAAGTATGGGTTCAGTCTTGAAGTACCAATTGGAAGTGCTCTTTCAACCATGTATGCAAAGTGTGGGAATTTGGAAGACGGCAATCTGGTGTTTAGGAGGATGCCAATGAGGGATGCAGTAACTTGGAATGCAATGATATCAGGGCTTTCACAAAATGGGAGGGGCATCGAGGCTCTACAGCTCTTTGAGGAGATGCGGTTGGAGGACGCAAAACCAGATTATGTTACATTTGTGAATGTTCTTTCTGCTTGCAGCCATATGGGATCTGTCGAGAGAGGGTGGATATATTTTAAGATGATGTCTAATGAATTTGGCATAGCCCCAAGGGTGGAACATTATGCTTGCATGGTTGACATATTAAGCCGTGCTGGGAAGTTAGATGAAGCCAAAGAGTTTATAGAATCGGCAACTATTGATCATGGTATGTGTTTATGGCGTATTCTATTAAGTGCTTCTCGGAACTATCGTAATTACGAATTGGGAGCCTATGCTGGCGAGAAGTTAATGGAGTTGGGCTCACAAGAATCATCAGCTTATGTGTTGTTGTCAAGCATATATACTTCCTTGGGTAGGAGGGAAGATGTTGAGCGGGTAAGGAGCCTAATGAAACTCAGAGGAGTGAGTAAGGAGCCTGGGTGTAGCTGGATTGAACTGAAGAGTCAGGTTCATGTGTTTGTTGTTGGTGATGAAAAGCATCCACAAATTGAAAATATACGCCATGTGACCCAAAGGCTACTCAGGCATATGAAGGATGAAGATGACCAACCTTTGCCTACCATCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

709

Amino Acids

78.67

Weight (kDa)

6.52

Isoelectric Point (pI)

40.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	75 - 124	5.3e-07	PPR repeat family
PPR_2	PF13041	282 - 330	6.7e-10	PPR repeat family
PPR	PF01535	285 - 314	6.6e-06	PPR repeat
PPR_2	PF13041	383 - 431	8.6e-12	PPR repeat family
PPR	PF01535	386 - 415	3.5e-07	PPR repeat
PPR_2	PF13041	485 - 532	8.2e-11	PPR repeat family
PPR_1	PF12854	485 - 513	5.2e-06	PPR repeat
PPR	PF01535	487 - 513	5.3e-09	PPR repeat
E_motif	PF20431	602 - 664	1.3e-20	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33680 AT2G33680 AT2G33680 AT2G33680 AT2G33680 AT2G33680 AT2G33680 AT2G33680
fragaria_vesca	FvH4_7g03841 FvH4_7g03850
malus_domestica	MD02G1276700.v1.1
prunus_persica	Prupe.2G043400_v2.0.a1
pyrus_communis	pycom02g23700
rosa_chinensis	RchiOBHm_Chr1g0326811 RchiOBHm_Chr1g0326821 RchiOBHm_Chr1g0327271 RchiOBHm_Chr1g0327321
rosa_laevigata	RLG00000030002 RLG00000030005 RLG00000030054
rosa_multiflora	Rmu_sc0001021.1_g000002 Rmu_sc0003600.1_g000043 Rmu_sc0005038.1_g000015 Rmu_sc0010151.1_g000003 Rmu_sc0010151.1_g000004 Rmu_sc0020365.1_g000001
rosa_roxburghii	Rroxscaffold_2G00128000 Rroxscaffold_4G00322770 Rroxscaffold_4G00322870
rosa_rugosa	Rorug01G0064900 Rorug01G0065300 Rorug01G0065400 Rorug01G0065500 Rorug01G0065500
rosa_samantha	Rh1AG082500 Rh1AG083100 Rh1BG065600 Rh1BG065900 Rh1BG066000 Rh1CG080500 Rh1DG087500 Rh2AG148500 Rh2AG148600 Rh2BG154000 Rh2DG154200 Rh3CG329400
rosa_wichuraiana	Rw1G006500 Rw1G006530 Rw2G011590 Rw2G011600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	231
AccBSI	CCGCTC	1 cut(s)	1930
AccI	GTMKAC	1 cut(s)	138
AccII	CGCG	1 cut(s)	416
AclWI	GGATC	1 cut(s)	1612
AcoI	YGGCCR	1 cut(s)	400
AcsI	RAATTY	8 cut(s)	538, 653, 717, 847, 1020, 1052, 1408, 1649
AcuI	CTGAAG	1 cut(s)	2015
AcyI	GRCGYC	3 cut(s)	228, 360, 374
AdeI	CACNNNGTG	1 cut(s)	890
AfaI	GTAC	3 cut(s)	32, 1336, 1365
AfiI	CCNNNNNNNGG	5 cut(s)	73, 85, 1125, 1669, 1911
AflIII	ACRYGT	2 cut(s)	330, 1086
AgeI	ACCGGT	1 cut(s)	707
AgsI	TTSAA	9 cut(s)	472, 1007, 1141, 1170, 1310, 1361, 1386, 1991, 2048
AjnI	CCWGG	2 cut(s)	236, 1972
AjuI	GAANNNNNNNTTGG	2 cut(s)	1353, 1385
AloI	GAACNNNNNNTCC	2 cut(s)	317, 349
Alw21I	GWGCWC	2 cut(s)	1003, 1381
Alw26I	GTCTC	2 cut(s)	238, 278
AlwI	GGATC	1 cut(s)	1612
Ama87I	CYCGRG	3 cut(s)	218, 530, 949
AoxI	GGCC	2 cut(s)	35, 400
ApeKI	GCWGC	6 cut(s)	16, 47, 431, 580, 1208, 1593
ApoI	RAATTY	8 cut(s)	538, 653, 717, 847, 1020, 1052, 1408, 1649
ArsI	GACNNNNNNTTYG	2 cut(s)	709, 741
AsiGI	ACCGGT	1 cut(s)	707
Asp700I	GAANNNNTTC	1 cut(s)	332
AspLEI	GCGC	5 cut(s)	315, 418, 607, 688, 775
AspS9I	GGNCC	2 cut(s)	36, 76
AsuC2I	CCSGG	1 cut(s)	189
AsuHPI	GGTGA	3 cut(s)	46, 851, 2036
AsuII	TTCGAA	1 cut(s)	1050
AvaI	CYCGRG	3 cut(s)	218, 530, 949
AvaII	GGWCC	1 cut(s)	76
BanII	GRGCYC	2 cut(s)	196, 1859
BbsI	GAAGAC	2 cut(s)	355, 1422
Bbv12I	GWGCWC	2 cut(s)	1003, 1381
BbvI	GCAGC	6 cut(s)	28, 34, 418, 592, 1195, 1605
BccI	CCATC	5 cut(s)	31, 204, 580, 1036, 2126
BceAI	ACGGC	5 cut(s)	35, 137, 384, 1435, 1689
BciT130I	CCWGG	2 cut(s)	238, 1974
BclI	TGATCA	1 cut(s)	1756
BcnI	CCSGG	1 cut(s)	189
BcoDI	GTCTC	2 cut(s)	238, 278
BfaI	CTAG	1 cut(s)	1272
BfmI	CTRYAG	1 cut(s)	1517
BfoI	RGCGCY	2 cut(s)	608, 689
BisI	GCNGC	9 cut(s)	17, 48, 178, 372, 400, 432, 581, 1209, 1594
BlsI	GCNGC	9 cut(s)	18, 49, 179, 373, 401, 433, 582, 1210, 1595
Bme1390I	CCNGG	3 cut(s)	189, 238, 1974
Bme18I	GGWCC	1 cut(s)	76
BmeT110I	CYCGRG	3 cut(s)	218, 530, 949
BmgT120I	GGNCC	2 cut(s)	36, 76
BmiI	GGNNCC	6 cut(s)	38, 124, 193, 1825, 1940, 1971
BmrFI	CCNGG	3 cut(s)	189, 238, 1974
BpiI	GAAGAC	2 cut(s)	355, 1422
BplI	GAGNNNNNCTC	2 cut(s)	1841, 1873
Bpu14I	TTCGAA	1 cut(s)	1050
BpuMI	CCSGG	1 cut(s)	189
BsaAI	YACGTR	1 cut(s)	509
BsaHI	GRCGYC	3 cut(s)	228, 360, 374
BsaI	GGTCTC	1 cut(s)	278
BsaJI	CCNNGG	3 cut(s)	1664, 1905, 1973
BsaWI	WCCGGW	1 cut(s)	707
Bsc4I	CCNNNNNNNGG	5 cut(s)	73, 85, 1125, 1669, 1911
Bse118I	RCCGGY	4 cut(s)	33, 119, 402, 707
Bse1I	ACTGG	1 cut(s)	880
Bse3DI	GCAATG	3 cut(s)	582, 873, 1479
BseBI	CCWGG	2 cut(s)	238, 1974
BseDI	CCNNGG	3 cut(s)	1664, 1905, 1973
BseGI	GGATG	9 cut(s)	508, 591, 601, 621, 634, 1446, 1459, 2035, 2098
BseLI	CCNNNNNNNGG	5 cut(s)	73, 85, 1125, 1669, 1911
BseMI	GCAATG	3 cut(s)	582, 873, 1479
BseMII	CTCAG	4 cut(s)	41, 684, 1966, 2092
BseNI	ACTGG	1 cut(s)	880
BseRI	GAGGAG	3 cut(s)	274, 1544, 1971
BseX3I	CGGCCG	1 cut(s)	400
BseXI	GCAGC	6 cut(s)	28, 34, 418, 592, 1195, 1605
BseYI	CCCAGC	4 cut(s)	264, 590, 938, 1709
Bsh1236I	CGCG	1 cut(s)	416
Bsh1285I	CGRYCG	1 cut(s)	403
BshFI	GGCC	2 cut(s)	37, 402
BshTI	ACCGGT	1 cut(s)	707
BsiEI	CGRYCG	1 cut(s)	403
BsiHKAI	GWGCWC	2 cut(s)	1003, 1381
BsiHKCI	CYCGRG	3 cut(s)	218, 530, 949
BsiSI	CCGG	6 cut(s)	34, 120, 189, 357, 403, 708
BslI	CCNNNNNNNGG	5 cut(s)	73, 85, 1125, 1669, 1911
BsmAI	GTCTC	2 cut(s)	238, 278
BsmBI	CGTCTC	1 cut(s)	238
BsmI	GAATGC	4 cut(s)	531, 775, 1236, 1474
BsnI	GGCC	2 cut(s)	37, 402
Bso31I	GGTCTC	1 cut(s)	278
BsoBI	CYCGRG	3 cut(s)	218, 530, 949
Bsp119I	TTCGAA	1 cut(s)	1050
Bsp1286I	GDGCHC	4 cut(s)	196, 1003, 1381, 1859
Bsp143I	GATC	2 cut(s)	1604, 1756
BspANI	GGCC	2 cut(s)	37, 402
BspCNI	CTCAG	4 cut(s)	40, 685, 1965, 2091
BspFNI	CGCG	1 cut(s)	416
BspLI	GGNNCC	6 cut(s)	38, 124, 193, 1825, 1940, 1971
BspPI	GGATC	1 cut(s)	1612
BspT104I	TTCGAA	1 cut(s)	1050
BspTNI	GGTCTC	1 cut(s)	278
BsrBI	CCGCTC	1 cut(s)	1930
BsrDI	GCAATG	3 cut(s)	582, 873, 1479
BsrFI	RCCGGY	4 cut(s)	33, 119, 402, 707
BsrI	ACTGG	1 cut(s)	880
BssAI	RCCGGY	4 cut(s)	33, 119, 402, 707
BssECI	CCNNGG	3 cut(s)	1664, 1905, 1973
BssMI	GATC	2 cut(s)	1604, 1756
BssNAI	GTATAC	1 cut(s)	139
BssNI	GRCGYC	3 cut(s)	228, 360, 374
BssT1I	CCWWGG	2 cut(s)	1664, 1905
Bst1107I	GTATAC	1 cut(s)	139
Bst2UI	CCWGG	2 cut(s)	238, 1974
Bst4CI	ACNGT	1 cut(s)	1339
Bst6I	CTCTTC	2 cut(s)	639, 1991
BstACI	GRCGYC	3 cut(s)	228, 360, 374
BstBAI	YACGTR	1 cut(s)	509
BstBI	TTCGAA	1 cut(s)	1050
BstC8I	GCNNGC	9 cut(s)	67, 317, 321, 404, 420, 436, 1591, 1684, 1834
BstDEI	CTNAG	8 cut(s)	27, 674, 693, 805, 818, 1298, 1952, 2078
BstENI	CCTNNNNNAGG	2 cut(s)	83, 1909
BstF5I	GGATG	9 cut(s)	508, 591, 601, 621, 634, 1446, 1459, 2035, 2098
BstFNI	CGCG	1 cut(s)	416
BstH2I	RGCGCY	2 cut(s)	608, 689
BstHHI	GCGC	5 cut(s)	315, 418, 607, 688, 775
BstKTI	GATC	2 cut(s)	1607, 1759
BstMAI	GTCTC	2 cut(s)	238, 278
BstMBI	GATC	2 cut(s)	1604, 1756
BstMCI	CGRYCG	1 cut(s)	403
BstMWI	GCNNNNNNNGC	4 cut(s)	310, 428, 596, 2080
BstNI	CCWGG	2 cut(s)	238, 1974
BstNSI	RCATGY	3 cut(s)	319, 1090, 1290
BstSCI	CCNGG	3 cut(s)	187, 236, 1972
BstSFI	CTRYAG	1 cut(s)	1517
BstUI	CGCG	1 cut(s)	416
BstV1I	GCAGC	6 cut(s)	28, 34, 418, 592, 1195, 1605
BstV2I	GAAGAC	2 cut(s)	355, 1422
BstX2I	RGATCY	1 cut(s)	1604
BstYI	RGATCY	1 cut(s)	1604
BstZ17I	GTATAC	1 cut(s)	139
BstZI	CGGCCG	1 cut(s)	400
BsuRI	GGCC	2 cut(s)	37, 402
BtgZI	GCGATG	1 cut(s)	127
BtsCI	GGATG	9 cut(s)	508, 591, 601, 621, 634, 1446, 1459, 2035, 2098
BtsIMutI	CAGTG	1 cut(s)	738
Cac8I	GCNNGC	9 cut(s)	67, 317, 321, 404, 420, 436, 1591, 1684, 1834
CfoI	GCGC	5 cut(s)	315, 418, 607, 688, 775
Cfr10I	RCCGGY	4 cut(s)	33, 119, 402, 707
Cfr13I	GGNCC	2 cut(s)	36, 76
CseI	GACGC	3 cut(s)	349, 363, 1556
Csp6I	GTAC	3 cut(s)	31, 1335, 1364
CspAI	ACCGGT	1 cut(s)	707
CviQI	GTAC	3 cut(s)	31, 1335, 1364
DdeI	CTNAG	8 cut(s)	27, 674, 693, 805, 818, 1298, 1952, 2078
DpnI	GATC	2 cut(s)	1606, 1758
DpnII	GATC	2 cut(s)	1604, 1756
DraIII	CACNNNGTG	1 cut(s)	890
EaeI	YGGCCR	1 cut(s)	400
EagI	CGGCCG	1 cut(s)	400
Eam1104I	CTCTTC	2 cut(s)	639, 1991
EarI	CTCTTC	2 cut(s)	639, 1991
EciI	GGCGGA	1 cut(s)	338
EclXI	CGGCCG	1 cut(s)	400
Eco130I	CCWWGG	2 cut(s)	1664, 1905
Eco24I	GRGCYC	2 cut(s)	196, 1859
Eco31I	GGTCTC	1 cut(s)	278
Eco32I	GATATC	1 cut(s)	1479
Eco47I	GGWCC	1 cut(s)	76
Eco52I	CGGCCG	1 cut(s)	400
Eco57I	CTGAAG	1 cut(s)	2015
Eco88I	CYCGRG	3 cut(s)	218, 530, 949
EcoNI	CCTNNNNNAGG	2 cut(s)	83, 1909
EcoO109I	RGGNCCY	1 cut(s)	76
EcoRI	GAATTC	3 cut(s)	538, 847, 1052
EcoRII	CCWGG	2 cut(s)	236, 1972
EcoRV	GATATC	1 cut(s)	1479
EcoT14I	CCWWGG	2 cut(s)	1664, 1905
EcoT22I	ATGCAT	1 cut(s)	933
EcoT38I	GRGCYC	2 cut(s)	196, 1859
ErhI	CCWWGG	2 cut(s)	1664, 1905
Esp3I	CGTCTC	1 cut(s)	238
FalI	AAGNNNNNCTT	2 cut(s)	477, 509
FauI	CCCGC	4 cut(s)	74, 312, 481, 1923
FauNDI	CATATG	3 cut(s)	927, 1599, 2085
FbaI	TGATCA	1 cut(s)	1756
FblI	GTMKAC	1 cut(s)	138
Fnu4HI	GCNGC	9 cut(s)	17, 48, 178, 372, 400, 432, 581, 1209, 1594
FokI	GGATG	9 cut(s)	515, 598, 608, 628, 641, 1453, 1466, 2022, 2105
FriOI	GRGCYC	2 cut(s)	196, 1859
Fsp4HI	GCNGC	9 cut(s)	17, 48, 178, 372, 400, 432, 581, 1209, 1594
FspBI	CTAG	1 cut(s)	1272
GlaI	GCGC	5 cut(s)	314, 417, 606, 687, 774
GluI	GCNGC	9 cut(s)	17, 48, 178, 372, 400, 432, 581, 1209, 1594
GsaI	CCCAGC	4 cut(s)	268, 594, 942, 1713
HaeII	RGCGCY	2 cut(s)	608, 689
HaeIII	GGCC	2 cut(s)	37, 402
HapII	CCGG	6 cut(s)	34, 120, 189, 357, 403, 708
HgaI	GACGC	3 cut(s)	349, 363, 1556
HhaI	GCGC	5 cut(s)	315, 418, 607, 688, 775
Hin1I	GRCGYC	3 cut(s)	228, 360, 374
Hin6I	GCGC	5 cut(s)	313, 416, 605, 686, 773
HinP1I	GCGC	5 cut(s)	313, 416, 605, 686, 773
HincII	GTYRAC	3 cut(s)	160, 1084, 1693
HindII	GTYRAC	3 cut(s)	160, 1084, 1693
HinfI	GANTC	7 cut(s)	4, 896, 972, 1294, 1742, 1865, 1999
HpaII	CCGG	6 cut(s)	34, 120, 189, 357, 403, 708
HphI	GGTGA	3 cut(s)	46, 851, 2036
Hpy166II	GTNNAC	6 cut(s)	139, 160, 412, 960, 1084, 1693
Hpy188I	TCNGA	6 cut(s)	9, 278, 388, 1800, 1955, 2126
Hpy188III	TCNNGA	9 cut(s)	218, 532, 613, 692, 911, 949, 1004, 1358, 1612
Hpy8I	GTNNAC	6 cut(s)	139, 160, 412, 960, 1084, 1693
Hpy99I	CGWCG	3 cut(s)	158, 233, 296
HpyAV	CCTTC	4 cut(s)	217, 631, 1004, 2083
HpyCH4III	ACNGT	1 cut(s)	1339
HpyCH4IV	ACGT	4 cut(s)	228, 332, 390, 508
HpyF10VI	GCNNNNNNNGC	4 cut(s)	310, 428, 596, 2080
HpyF3I	CTNAG	8 cut(s)	27, 674, 693, 805, 818, 1298, 1952, 2078
HpySE526I	ACGT	4 cut(s)	228, 332, 390, 508
Hsp92I	GRCGYC	3 cut(s)	228, 360, 374
HspAI	GCGC	5 cut(s)	313, 416, 605, 686, 773
KroI	GCCGGC	1 cut(s)	402
KroNI	GCCGGC	1 cut(s)	404
Ksp22I	TGATCA	1 cut(s)	1756
Kzo9I	GATC	2 cut(s)	1604, 1756
LmnI	GCTCC	5 cut(s)	191, 801, 1823, 1938, 1969
Lsp1109I	GCAGC	6 cut(s)	28, 34, 418, 592, 1195, 1605
MaeI	CTAG	1 cut(s)	1272
MaeII	ACGT	4 cut(s)	228, 332, 390, 508
MaeIII	GTNAC	7 cut(s)	52, 93, 778, 989, 1459, 1564, 2062
MalI	GATC	2 cut(s)	1606, 1758
MbiI	CCGCTC	1 cut(s)	1930
MboI	GATC	2 cut(s)	1604, 1756
MfeI	CAATTG	1 cut(s)	1368
MflI	RGATCY	1 cut(s)	1604
MhlI	GDGCHC	4 cut(s)	196, 1003, 1381, 1859
MlyI	GAGTC	4 cut(s)	13, 981, 1303, 2008
MmeI	TCCRAC	4 cut(s)	366, 480, 949, 1521
Mph1103I	ATGCAT	1 cut(s)	933
MroNI	GCCGGC	1 cut(s)	402
MroXI	GAANNNNTTC	1 cut(s)	332
MseI	TTAA	7 cut(s)	110, 828, 1037, 1632, 1700, 1787, 1844
MspA1I	CMGCKG	1 cut(s)	583
MspI	CCGG	6 cut(s)	34, 120, 189, 357, 403, 708
MspR9I	CCNGG	3 cut(s)	189, 238, 1974
MunI	CAATTG	1 cut(s)	1368
Mva1269I	GAATGC	4 cut(s)	531, 775, 1236, 1474
MvaI	CCWGG	2 cut(s)	238, 1974
MvnI	CGCG	1 cut(s)	416
MwoI	GCNNNNNNNGC	4 cut(s)	310, 428, 596, 2080
NaeI	GCCGGC	1 cut(s)	404
NciI	CCSGG	1 cut(s)	189
NdeI	CATATG	3 cut(s)	927, 1599, 2085
NdeII	GATC	2 cut(s)	1604, 1756
NgoMIV	GCCGGC	1 cut(s)	402
NlaIV	GGNNCC	6 cut(s)	38, 124, 193, 1825, 1940, 1971
NmuCI	GTSAC	4 cut(s)	52, 93, 989, 2062
NsiI	ATGCAT	1 cut(s)	933
NspI	RCATGY	3 cut(s)	319, 1090, 1290
NspV	TTCGAA	1 cut(s)	1050
PaeI	GCATGC	1 cut(s)	319
PaeR7I	CTCGAG	1 cut(s)	530
PciI	ACATGT	1 cut(s)	1086
PcsI	WCGNNNNNNNCGW	3 cut(s)	150, 297, 1804
PctI	GAATGC	4 cut(s)	531, 775, 1236, 1474
PdiI	GCCGGC	1 cut(s)	404
PdmI	GAANNNNTTC	1 cut(s)	332
PfeI	GAWTC	3 cut(s)	896, 1742, 1865
PflFI	GACNNNGTC	1 cut(s)	230
PfoI	TCCNGGA	1 cut(s)	236
PinAI	ACCGGT	1 cut(s)	707
PkrI	GCNGC	9 cut(s)	18, 49, 179, 373, 401, 433, 582, 1210, 1595
PleI	GAGTC	4 cut(s)	12, 980, 1302, 2007
PpsI	GAGTC	4 cut(s)	12, 980, 1302, 2007
Ppu21I	YACGTR	1 cut(s)	509
PpuMI	RGGWCCY	1 cut(s)	76
PscI	ACATGT	1 cut(s)	1086
Psp5II	RGGWCCY	1 cut(s)	76
Psp6I	CCWGG	2 cut(s)	236, 1972
PspFI	CCCAGC	4 cut(s)	264, 590, 938, 1709
PspGI	CCWGG	2 cut(s)	236, 1972
PspN4I	GGNNCC	6 cut(s)	38, 124, 193, 1825, 1940, 1971
PspPI	GGNCC	2 cut(s)	36, 76
PspPPI	RGGWCCY	1 cut(s)	76
PsuI	RGATCY	1 cut(s)	1604
PsyI	GACNNNGTC	1 cut(s)	230
RsaI	GTAC	3 cut(s)	32, 1336, 1365
RsaNI	GTAC	3 cut(s)	31, 1335, 1364
SaqAI	TTAA	7 cut(s)	110, 828, 1037, 1632, 1700, 1787, 1844
SatI	GCNGC	9 cut(s)	17, 48, 178, 372, 400, 432, 581, 1209, 1594
Sau3AI	GATC	2 cut(s)	1604, 1756
Sau96I	GGNCC	2 cut(s)	36, 76
SchI	GAGTC	4 cut(s)	13, 981, 1303, 2008
ScrFI	CCNGG	3 cut(s)	189, 238, 1974
SduI	GDGCHC	4 cut(s)	196, 1003, 1381, 1859
SfcI	CTRYAG	1 cut(s)	1517
Sfr274I	CTCGAG	1 cut(s)	530
SfuI	TTCGAA	1 cut(s)	1050
SinI	GGWCC	1 cut(s)	76
SlaI	CTCGAG	1 cut(s)	530
SmlI	CTYRAG	1 cut(s)	530
SmoI	CTYRAG	1 cut(s)	530
SphI	GCATGC	1 cut(s)	319
SspMI	CTAG	1 cut(s)	1272
StyD4I	CCNGG	3 cut(s)	187, 236, 1972
StyI	CCWWGG	2 cut(s)	1664, 1905
TaaI	ACNGT	1 cut(s)	1339
TaiI	ACGT	4 cut(s)	231, 335, 393, 511
TaqI	TCGA	6 cut(s)	300, 531, 1050, 1292, 1509, 1611
TauI	GCSGC	3 cut(s)	180, 374, 402
TfiI	GAWTC	3 cut(s)	896, 1742, 1865
Tru1I	TTAA	7 cut(s)	110, 828, 1037, 1632, 1700, 1787, 1844
Tru9I	TTAA	7 cut(s)	110, 828, 1037, 1632, 1700, 1787, 1844
TscAI	CASTG	1 cut(s)	738
TseFI	GTSAC	4 cut(s)	52, 93, 989, 2062
TseI	GCWGC	6 cut(s)	16, 47, 431, 580, 1208, 1593
Tsp45I	GTSAC	4 cut(s)	52, 93, 989, 2062
TspRI	CASTG	1 cut(s)	738
Tth111I	GACNNNGTC	1 cut(s)	230
VpaK11BI	GGWCC	1 cut(s)	76
XagI	CCTNNNNNAGG	2 cut(s)	83, 1909
XapI	RAATTY	8 cut(s)	538, 653, 717, 847, 1020, 1052, 1408, 1649
XceI	RCATGY	3 cut(s)	319, 1090, 1290
XhoI	CTCGAG	1 cut(s)	530
XmiI	GTMKAC	1 cut(s)	138
XmnI	GAANNNNTTC	1 cut(s)	332
XspI	CTAG	1 cut(s)	1272
ZraI	GACGTC	1 cut(s)	229
Zsp2I	ATGCAT	1 cut(s)	933

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.