Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001580

Physical Location & Seq

Genomic Coordinates Forward (+)

15349218 .. 15350701

Gene Structure 1484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55639

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGATATCTGGTTTTGCGCAGAGTGGGGATTCACAGAAGGCTTTGGACTTGTTTTCAGACATGCATTTTTCTGGGATAGTGCCGACCGAGTTTGCGTTTGGTGGGGTCATCAGTGCCTGTAGTGACATCAATGCTCTTGAACAAGGAAAGCAAGTGCATAGTTATCTGCTCAAGTTGGGATTTGAATTCCAATTATATATAATTTCAGCTTTGCTTGACATGTATGGCAAATGTGGTAGCCTTAGTGATGCTCAGAAGGCAAATCCATGCGCATACCATTATGGATTCAGTCTTGAATTTCCAATTGGAAGTTCTCTTTTCACTATGTATGCAAAGTGTGGGAATTTGGAAGATGGGAAGTTAGTGTTTAGGAGAATGCCTACGAGAGATGTAGTGTCTTGGAATGCAATGATATCTGGGCTTTCACAAAATGGGCAGGGTAACGAAGCTCTAGAGCTCTTTGAGGAGATGCGATTGGGTGGCACAGCGCCGGATTACGTTACATTTGTGAATGTTCTCTCTGCTTGCAGCCATATGGGATCTGTGGAGAGAGGATGGATTTATTTCAAGATGATGTCTAATGAATTTGGCATTGCCCCAAGGGTGGAGCATTATGCTTGCATGGTTGATGTCCTGAGCCGTGCTGGGAAGTTAGATGAAGCCAAAGATTTCATAGAGTCAGCAACTATTGATCATGGCATCCGTTTATGGCGTATTTTATTAAGTGCTTGTCGAAACTTTCAGAATTATGAATTGGGAGCATATGCCGGAGAGAAGCTAATGGAGTTAGGTTCACTAGAATCACAGGCTTATGTGCTATTGTCAAGCATCTATACTTCCCTGGGTAGGCAGGAAGATGTTAAGCGGGTAAGGAGGATGATGAAACTTCGAGGGGTGAGTAAGAAGCCTGGCTGTAGCTGGATTGAGTTGAAGAGTCAGGTTCATGTGTTTGTTGTTGGTGATTTGATGCATCCACAGATTGATAGTATAGGTGTTGAGATCCGAAGGTTAATCAAGCATATGAAGGATGAAGGATACCAACCTTCCTCTATCACTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

353

Amino Acids

39.4

Weight (kDa)

6.16

Isoelectric Point (pI)

46.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	1 - 41	2.8e-06	PPR repeat family
PPR_2	PF13041	129 - 177	3.1e-13	PPR repeat family
PPR_1	PF12854	130 - 158	6.3e-07	PPR repeat
PPR	PF01535	132 - 158	1.8e-09	PPR repeat
E_motif	PF20431	248 - 309	6.5e-19	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33680 AT2G33680 AT2G33680 AT2G33680 AT2G33680 AT2G33680 AT2G33680 AT2G33680
fragaria_vesca	FvH4_7g03841 FvH4_7g03850
malus_domestica	MD02G1276700.v1.1
prunus_persica	Prupe.2G043400_v2.0.a1
pyrus_communis	pycom02g23700
rosa_chinensis	RchiOBHm_Chr1g0326811 RchiOBHm_Chr1g0326821 RchiOBHm_Chr1g0327271 RchiOBHm_Chr1g0327321
rosa_laevigata	RLG00000030002 RLG00000030005 RLG00000030054
rosa_multiflora	Rmu_sc0001021.1_g000002 Rmu_sc0003600.1_g000043 Rmu_sc0005038.1_g000015 Rmu_sc0010151.1_g000003 Rmu_sc0010151.1_g000004 Rmu_sc0020365.1_g000001
rosa_roxburghii	Rroxscaffold_2G00128000 Rroxscaffold_4G00322770 Rroxscaffold_4G00322870
rosa_rugosa	Rorug01G0064900 Rorug01G0065300 Rorug01G0065400 Rorug01G0065500 Rorug01G0065500
rosa_samantha	Rh1AG082500 Rh1AG083100 Rh1BG065600 Rh1BG065900 Rh1BG066000 Rh1CG080500 Rh1DG087500 Rh2AG148500 Rh2AG148600 Rh2BG154000 Rh2DG154200 Rh3CG329400
rosa_wichuraiana	Rw1G006500 Rw1G006530 Rw2G011590 Rw2G011600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	18, 271
AciI	CCGC	1 cut(s)	865
AclWI	GGATC	2 cut(s)	547, 994
AcsI	RAATTY	4 cut(s)	185, 296, 343, 584
AfiI	CCNNNNNNNGG	2 cut(s)	604, 846
AflIII	ACRYGT	1 cut(s)	219
AgsI	TTSAA	5 cut(s)	140, 185, 296, 568, 931
AjnI	CCWGG	2 cut(s)	840, 907
AjuI	GAANNNNNNNTTGG	6 cut(s)	288, 295, 320, 327, 737, 769
AluBI	AGCT	5 cut(s)	209, 449, 457, 778, 918
AluI	AGCT	5 cut(s)	209, 449, 457, 778, 918
Alw21I	GWGCWC	1 cut(s)	459
AlwI	GGATC	2 cut(s)	547, 994
AlwNI	CAGNNNCTG	1 cut(s)	117
ApeKI	GCWGC	1 cut(s)	528
ApoI	RAATTY	4 cut(s)	185, 296, 343, 584
AspLEI	GCGC	3 cut(s)	19, 272, 490
AsuHPI	GGTGA	2 cut(s)	907, 971
BanII	GRGCYC	1 cut(s)	459
Bbv12I	GWGCWC	1 cut(s)	459
BbvI	GCAGC	1 cut(s)	540
BccI	CCATC	2 cut(s)	347, 549
BceAI	ACGGC	1 cut(s)	624
BciT130I	CCWGG	2 cut(s)	842, 909
BciVI	GTATCC	1 cut(s)	1028
BclI	TGATCA	1 cut(s)	691
BfaI	CTAG	2 cut(s)	452, 797
BfmI	CTRYAG	2 cut(s)	118, 913
BfoI	RGCGCY	1 cut(s)	491
BfuI	GTATCC	1 cut(s)	1028
BisI	GCNGC	1 cut(s)	529
BlsI	GCNGC	1 cut(s)	530
Bme1390I	CCNGG	2 cut(s)	842, 909
BmrFI	CCNGG	2 cut(s)	842, 909
BmsI	GCATC	6 cut(s)	238, 459, 708, 837, 957, 979
Bpu10I	CCTNAGC	1 cut(s)	635
BpuEI	CTTGAG	1 cut(s)	155
BsaJI	CCNNGG	3 cut(s)	599, 840, 841
Bsc4I	CCNNNNNNNGG	2 cut(s)	604, 846
Bse3DI	GCAATG	2 cut(s)	414, 591
BseBI	CCWGG	2 cut(s)	842, 909
BseDI	CCNNGG	3 cut(s)	599, 840, 841
BseGI	GGATG	5 cut(s)	560, 699, 882, 970, 1033
BseLI	CCNNNNNNNGG	2 cut(s)	604, 846
BseMI	GCAATG	2 cut(s)	414, 591
BseMII	CTCAG	2 cut(s)	266, 626
BseRI	GAGGAG	1 cut(s)	479
BseXI	GCAGC	1 cut(s)	540
BseYI	CCCAGC	1 cut(s)	644
Bsh1285I	CGRYCG	1 cut(s)	87
BsiEI	CGRYCG	1 cut(s)	87
BsiHKAI	GWGCWC	1 cut(s)	459
BsiSI	CCGG	2 cut(s)	491, 768
BslI	CCNNNNNNNGG	2 cut(s)	604, 846
BsmI	GAATGC	2 cut(s)	381, 409
Bsp1286I	GDGCHC	1 cut(s)	459
Bsp143I	GATC	3 cut(s)	539, 691, 999
BspACI	CCGC	1 cut(s)	865
BspCNI	CTCAG	2 cut(s)	265, 627
BspPI	GGATC	2 cut(s)	547, 994
BsrDI	GCAATG	2 cut(s)	414, 591
BssECI	CCNNGG	3 cut(s)	599, 840, 841
BssMI	GATC	3 cut(s)	539, 691, 999
BssT1I	CCWWGG	1 cut(s)	599
Bst2UI	CCWGG	2 cut(s)	842, 909
Bst6I	CTCTTC	1 cut(s)	926
BstC8I	GCNNGC	2 cut(s)	526, 619
BstDEI	CTNAG	3 cut(s)	242, 252, 635
BstF5I	GGATG	5 cut(s)	560, 699, 882, 970, 1033
BstH2I	RGCGCY	1 cut(s)	491
BstHHI	GCGC	3 cut(s)	19, 272, 490
BstKTI	GATC	3 cut(s)	542, 694, 1002
BstMBI	GATC	3 cut(s)	539, 691, 999
BstMCI	CGRYCG	1 cut(s)	87
BstMWI	GCNNNNNNNGC	1 cut(s)	257
BstNI	CCWGG	2 cut(s)	842, 909
BstNSI	RCATGY	2 cut(s)	64, 223
BstSCI	CCNGG	2 cut(s)	840, 907
BstSFI	CTRYAG	2 cut(s)	118, 913
BstV1I	GCAGC	1 cut(s)	540
BstX2I	RGATCY	2 cut(s)	539, 999
BstYI	RGATCY	2 cut(s)	539, 999
BsuI	GTATCC	1 cut(s)	1028
BtsCI	GGATG	5 cut(s)	560, 699, 882, 970, 1033
BtsIMutI	CAGTG	1 cut(s)	118
Cac8I	GCNNGC	2 cut(s)	526, 619
CaiI	CAGNNNCTG	1 cut(s)	117
CfoI	GCGC	3 cut(s)	19, 272, 490
CviAII	CATG	6 cut(s)	61, 220, 267, 622, 695, 944
DdeI	CTNAG	3 cut(s)	242, 252, 635
DpnI	GATC	3 cut(s)	541, 693, 1001
DpnII	GATC	3 cut(s)	539, 691, 999
Eam1104I	CTCTTC	1 cut(s)	926
EarI	CTCTTC	1 cut(s)	926
Ecl136II	GAGCTC	1 cut(s)	457
Eco130I	CCWWGG	1 cut(s)	599
Eco24I	GRGCYC	1 cut(s)	459
Eco32I	GATATC	2 cut(s)	6, 414
Eco53kI	GAGCTC	1 cut(s)	457
EcoICRI	GAGCTC	1 cut(s)	457
EcoRI	GAATTC	1 cut(s)	185
EcoRII	CCWGG	2 cut(s)	840, 907
EcoRV	GATATC	2 cut(s)	6, 414
EcoT14I	CCWWGG	1 cut(s)	599
EcoT22I	ATGCAT	2 cut(s)	66, 972
EcoT38I	GRGCYC	1 cut(s)	459
ErhI	CCWWGG	1 cut(s)	599
FaeI	CATG	6 cut(s)	64, 223, 270, 625, 698, 947
FatI	CATG	6 cut(s)	60, 219, 266, 621, 694, 943
FauI	CCCGC	1 cut(s)	858
FauNDI	CATATG	3 cut(s)	534, 763, 1020
FbaI	TGATCA	1 cut(s)	691
Fnu4HI	GCNGC	1 cut(s)	529
FokI	GGATG	5 cut(s)	567, 686, 889, 957, 1040
FriOI	GRGCYC	1 cut(s)	459
Fsp4HI	GCNGC	1 cut(s)	529
FspAI	RTGCGCAY	1 cut(s)	271
FspBI	CTAG	2 cut(s)	452, 797
FspI	TGCGCA	2 cut(s)	18, 271
GlaI	GCGC	3 cut(s)	18, 271, 489
GluI	GCNGC	1 cut(s)	529
GsaI	CCCAGC	1 cut(s)	648
HaeII	RGCGCY	1 cut(s)	491
HapII	CCGG	2 cut(s)	491, 768
HhaI	GCGC	3 cut(s)	19, 272, 490
Hin1II	CATG	6 cut(s)	64, 223, 270, 625, 698, 947
Hin6I	GCGC	3 cut(s)	17, 270, 488
HinP1I	GCGC	3 cut(s)	17, 270, 488
HinfI	GANTC	5 cut(s)	29, 285, 677, 800, 934
HpaII	CCGG	2 cut(s)	491, 768
HphI	GGTGA	2 cut(s)	907, 971
Hpy166II	GTNNAC	1 cut(s)	794
Hpy188I	TCNGA	4 cut(s)	58, 255, 744, 1004
Hpy188III	TCNNGA	5 cut(s)	137, 293, 452, 568, 634
Hpy8I	GTNNAC	1 cut(s)	794
HpyAV	CCTTC	6 cut(s)	31, 250, 999, 1018, 1025, 1053
HpyCH4IV	ACGT	1 cut(s)	498
HpyCH4V	TGCA	7 cut(s)	64, 157, 332, 407, 528, 621, 970
HpyF10VI	GCNNNNNNNGC	1 cut(s)	257
HpyF3I	CTNAG	3 cut(s)	242, 252, 635
HpySE526I	ACGT	1 cut(s)	498
Hsp92II	CATG	6 cut(s)	64, 223, 270, 625, 698, 947
HspAI	GCGC	3 cut(s)	17, 270, 488
Ksp22I	TGATCA	1 cut(s)	691
Kzo9I	GATC	3 cut(s)	539, 691, 999
LmnI	GCTCC	2 cut(s)	607, 758
Lsp1109I	GCAGC	1 cut(s)	540
LweI	GCATC	6 cut(s)	238, 459, 708, 837, 957, 979
MaeI	CTAG	2 cut(s)	452, 797
MaeII	ACGT	1 cut(s)	498
MaeIII	GTNAC	3 cut(s)	122, 440, 499
MalI	GATC	3 cut(s)	541, 693, 1001
MboI	GATC	3 cut(s)	539, 691, 999
MboII	GAAGA	3 cut(s)	362, 866, 943
MfeI	CAATTG	1 cut(s)	303
MflI	RGATCY	2 cut(s)	539, 999
MhlI	GDGCHC	1 cut(s)	459
MluCI	AATT	9 cut(s)	185, 191, 201, 296, 303, 343, 584, 745, 752
MlyI	GAGTC	2 cut(s)	686, 943
MnlI	CCTC	5 cut(s)	457, 545, 867, 884, 1057
Mph1103I	ATGCAT	2 cut(s)	66, 972
MseI	TTAA	3 cut(s)	722, 861, 1010
MspI	CCGG	2 cut(s)	491, 768
MspR9I	CCNGG	2 cut(s)	842, 909
MunI	CAATTG	1 cut(s)	303
Mva1269I	GAATGC	2 cut(s)	381, 409
MvaI	CCWGG	2 cut(s)	842, 909
MwoI	GCNNNNNNNGC	1 cut(s)	257
NdeI	CATATG	3 cut(s)	534, 763, 1020
NdeII	GATC	3 cut(s)	539, 691, 999
NlaIII	CATG	6 cut(s)	64, 223, 270, 625, 698, 947
NmuCI	GTSAC	1 cut(s)	122
NsbI	TGCGCA	2 cut(s)	18, 271
NsiI	ATGCAT	2 cut(s)	66, 972
NspI	RCATGY	2 cut(s)	64, 223
PasI	CCCWGGG	1 cut(s)	841
PciI	ACATGT	1 cut(s)	219
PctI	GAATGC	2 cut(s)	381, 409
PfeI	GAWTC	3 cut(s)	29, 285, 800
PkrI	GCNGC	1 cut(s)	530
PleI	GAGTC	2 cut(s)	685, 942
PpsI	GAGTC	2 cut(s)	685, 942
PscI	ACATGT	1 cut(s)	219
Psp124BI	GAGCTC	1 cut(s)	459
Psp6I	CCWGG	2 cut(s)	840, 907
PspFI	CCCAGC	1 cut(s)	644
PspGI	CCWGG	2 cut(s)	840, 907
PstNI	CAGNNNCTG	1 cut(s)	117
PsuI	RGATCY	2 cut(s)	539, 999
SacI	GAGCTC	1 cut(s)	459
SaqAI	TTAA	3 cut(s)	722, 861, 1010
SatI	GCNGC	1 cut(s)	529
Sau3AI	GATC	3 cut(s)	539, 691, 999
SchI	GAGTC	2 cut(s)	686, 943
ScrFI	CCNGG	2 cut(s)	842, 909
SduI	GDGCHC	1 cut(s)	459
SfaNI	GCATC	6 cut(s)	238, 459, 708, 837, 957, 979
SfcI	CTRYAG	2 cut(s)	118, 913
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
Sse9I	AATT	9 cut(s)	185, 191, 201, 296, 303, 343, 584, 745, 752
SsiI	CCGC	1 cut(s)	865
SspMI	CTAG	2 cut(s)	452, 797
SstI	GAGCTC	1 cut(s)	459
StyD4I	CCNGG	2 cut(s)	840, 907
StyI	CCWWGG	1 cut(s)	599
TaiI	ACGT	1 cut(s)	501
TaqI	TCGA	2 cut(s)	733, 889
TaqII	GACCGA	1 cut(s)	101
TasI	AATT	9 cut(s)	185, 191, 201, 296, 303, 343, 584, 745, 752
TfiI	GAWTC	3 cut(s)	29, 285, 800
Tru1I	TTAA	3 cut(s)	722, 861, 1010
Tru9I	TTAA	3 cut(s)	722, 861, 1010
TscAI	CASTG	1 cut(s)	118
TseFI	GTSAC	1 cut(s)	122
TseI	GCWGC	1 cut(s)	528
Tsp45I	GTSAC	1 cut(s)	122
TspDTI	ATGAA	8 cut(s)	597, 661, 672, 765, 896, 932, 1037, 1044
TspGWI	ACGGA	1 cut(s)	692
TspRI	CASTG	1 cut(s)	118
XapI	RAATTY	4 cut(s)	185, 296, 343, 584
XbaI	TCTAGA	1 cut(s)	451
XceI	RCATGY	2 cut(s)	64, 223
XspI	CTAG	2 cut(s)	452, 797
Zsp2I	ATGCAT	2 cut(s)	66, 972

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.