Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001580

Physical Location & Seq

Genomic Coordinates Forward (+)

15348405 .. 15349215

Gene Structure 811 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55638

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGAGTCTTTCTTGTCACTCCCGATCCTTGTTCTCCACGCTCCAACACTACACTCGTCTAAAGGACCTCCAAAGAGGCAAGCCTCTCCACGCTCACATCATCACAACCCGCGTCTACATTGCCAATGCCCTCATCAACCTCTACGTCAAATCCGGACACTTACACACAGCCCACCTCGTATTCGAAACCAAACCTCACAAAGACGTGGTCTCATGGAACACCCTCATCAACGGCTACTCTCAACAGGGCTTCAGATACTCCTCGTTTGTGTTGGACCTTTTTCGACGCATGCGGGGTGAGAATACCTCCCCGGATTCGCACACTTTTGCTAGAGTTTGTAATGTTGCTTCATATGTAAAGGATGTTTTGGGTGGCGGGCAAGTTCACACGGTTGCTGTTAAGGCTGTGGGCTGTTTTGATGTGTTTGTTGGAAGCTCTCTTGTTAATATGTATTGTAAGATGGGTCTTGTAGGGGATGCACGTAAGGTGTTCGATGAAATGCTTGAGAGGAATTCGGTTACTTGGGCTACTATGATTTCTGGGTATGCAATGCAACAGTTGGGTGCAGATGGATTAGAGGTTTTTATACTGATGCGTAGGAGTGAGGAGAGGGAAGAAGAGAATGAGTTTGTTTTGACCGCGGTTCTTAGTGGTTTGGCGGGTCCTGAATTTGTTGAGACAGGCAAGCAGATTCATTGTCTTGCGGTGAAAAATGGGCTGATGTGTAATGTTTCTGTTGGGAATGCGCTTGTCACGATGTATGCGAAATGTGGGAGCTTAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

261

Amino Acids

28.95

Weight (kDa)

8.65

Isoelectric Point (pI)

37.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	67 - 109	1e-06	PPR repeat family
PPR	PF01535	145 - 171	9.7e-06	PPR repeat
PPR_1	PF12854	145 - 167	4.2e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33680 AT2G33680 AT2G33680 AT2G33680 AT2G33680 AT2G33680 AT2G33680 AT2G33680
fragaria_vesca	FvH4_7g03841 FvH4_7g03850
malus_domestica	MD02G1276700.v1.1
prunus_persica	Prupe.2G043400_v2.0.a1
pyrus_communis	pycom02g23700
rosa_chinensis	RchiOBHm_Chr1g0326811 RchiOBHm_Chr1g0326821 RchiOBHm_Chr1g0327271 RchiOBHm_Chr1g0327321
rosa_laevigata	RLG00000030002 RLG00000030005 RLG00000030054
rosa_multiflora	Rmu_sc0001021.1_g000002 Rmu_sc0003600.1_g000043 Rmu_sc0005038.1_g000015 Rmu_sc0010151.1_g000003 Rmu_sc0010151.1_g000004 Rmu_sc0020365.1_g000001
rosa_roxburghii	Rroxscaffold_2G00128000 Rroxscaffold_4G00322770 Rroxscaffold_4G00322870
rosa_rugosa	Rorug01G0064900 Rorug01G0065300 Rorug01G0065400 Rorug01G0065500 Rorug01G0065500
rosa_samantha	Rh1AG082500 Rh1AG083100 Rh1BG065600 Rh1BG065900 Rh1BG066000 Rh1CG080500 Rh1DG087500 Rh2AG148500 Rh2AG148600 Rh2BG154000 Rh2DG154200 Rh3CG329400
rosa_wichuraiana	Rw1G006500 Rw1G006530 Rw2G011590 Rw2G011600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	114
AccII	CGCG	2 cut(s)	111, 641
AccIII	TCCGGA	1 cut(s)	152
AciI	CCGC	7 cut(s)	109, 292, 375, 639, 641, 659, 704
AclWI	GGATC	1 cut(s)	18
AcsI	RAATTY	2 cut(s)	511, 668
AcuI	CTGAAG	1 cut(s)	235
AjiI	CACGTC	1 cut(s)	205
AluBI	AGCT	3 cut(s)	435, 777, 782
AluI	AGCT	3 cut(s)	435, 777, 782
Alw26I	GTCTC	2 cut(s)	214, 671
AlwI	GGATC	1 cut(s)	18
Aor13HI	TCCGGA	1 cut(s)	152
ApoI	RAATTY	2 cut(s)	511, 668
ArsI	GACNNNNNNTTYG	2 cut(s)	192, 224
AspLEI	GCGC	1 cut(s)	748
AspS9I	GGNCC	3 cut(s)	64, 274, 662
AsuC2I	CCSGG	1 cut(s)	311
AsuHPI	GGTGA	2 cut(s)	308, 718
AsuII	TTCGAA	1 cut(s)	183
AvaII	GGWCC	3 cut(s)	64, 274, 662
BarI	GAAGNNNNNNTAC	2 cut(s)	331, 363
BccI	CCATC	2 cut(s)	454, 563
BceAI	ACGGC	1 cut(s)	247
BcnI	CCSGG	1 cut(s)	311
BcoDI	GTCTC	2 cut(s)	214, 671
BfaI	CTAG	1 cut(s)	330
BlpI	GCTNAGC	1 cut(s)	778
Bme1390I	CCNGG	1 cut(s)	311
Bme18I	GGWCC	3 cut(s)	64, 274, 662
BmgBI	CACGTC	1 cut(s)	205
BmgT120I	GGNCC	3 cut(s)	64, 274, 662
BmiI	GGNNCC	1 cut(s)	663
BmrFI	CCNGG	1 cut(s)	311
BmsI	GCATC	2 cut(s)	466, 582
BplI	GAGNNNNNCTC	2 cut(s)	290, 322
Bpu1102I	GCTNAGC	1 cut(s)	778
Bpu14I	TTCGAA	1 cut(s)	183
BpuEI	CTTGAG	1 cut(s)	524
BpuMI	CCSGG	1 cut(s)	311
BsaAI	YACGTR	1 cut(s)	482
BsaI	GGTCTC	1 cut(s)	214
BsaJI	CCNNGG	2 cut(s)	309, 639
BsaWI	WCCGGW	1 cut(s)	152
Bse3DI	GCAATG	2 cut(s)	117, 555
BseAI	TCCGGA	1 cut(s)	152
BseDI	CCNNGG	2 cut(s)	309, 639
BseGI	GGATG	2 cut(s)	367, 481
BseMI	GCAATG	2 cut(s)	117, 555
BseRI	GAGGAG	2 cut(s)	250, 620
BsgI	GTGCAG	1 cut(s)	585
Bsh1236I	CGCG	2 cut(s)	111, 641
BsiSI	CCGG	2 cut(s)	153, 311
BsmAI	GTCTC	2 cut(s)	214, 671
BsmI	GAATGC	1 cut(s)	748
Bso31I	GGTCTC	1 cut(s)	214
Bsp119I	TTCGAA	1 cut(s)	183
Bsp13I	TCCGGA	1 cut(s)	152
Bsp143I	GATC	1 cut(s)	23
Bsp1720I	GCTNAGC	1 cut(s)	778
BspACI	CCGC	7 cut(s)	109, 292, 375, 639, 641, 659, 704
BspEI	TCCGGA	1 cut(s)	152
BspFNI	CGCG	2 cut(s)	111, 641
BspLI	GGNNCC	1 cut(s)	663
BspPI	GGATC	1 cut(s)	18
BspT104I	TTCGAA	1 cut(s)	183
BspTNI	GGTCTC	1 cut(s)	214
BsrDI	GCAATG	2 cut(s)	117, 555
BssECI	CCNNGG	2 cut(s)	309, 639
BssMI	GATC	1 cut(s)	23
Bst4CI	ACNGT	2 cut(s)	391, 558
Bst6I	CTCTTC	1 cut(s)	612
BstBAI	YACGTR	1 cut(s)	482
BstBI	TTCGAA	1 cut(s)	183
BstC8I	GCNNGC	4 cut(s)	80, 290, 377, 686
BstDEI	CTNAG	3 cut(s)	647, 778, 783
BstDSI	CCRYGG	1 cut(s)	639
BstF5I	GGATG	2 cut(s)	367, 481
BstFNI	CGCG	2 cut(s)	111, 641
BstHHI	GCGC	1 cut(s)	748
BstKTI	GATC	1 cut(s)	26
BstMAI	GTCTC	2 cut(s)	214, 671
BstMBI	GATC	1 cut(s)	23
BstMWI	GCNNNNNNNGC	1 cut(s)	401
BstNSI	RCATGY	1 cut(s)	292
BstSCI	CCNGG	1 cut(s)	309
BstUI	CGCG	2 cut(s)	111, 641
BtgI	CCRYGG	1 cut(s)	639
BtrI	CACGTC	1 cut(s)	205
BtsCI	GGATG	2 cut(s)	367, 481
Cac8I	GCNNGC	4 cut(s)	80, 290, 377, 686
CfoI	GCGC	1 cut(s)	748
Cfr13I	GGNCC	3 cut(s)	64, 274, 662
Cfr42I	CCGCGG	1 cut(s)	642
CseI	GACGC	2 cut(s)	100, 294
CviAII	CATG	2 cut(s)	213, 289
DdeI	CTNAG	3 cut(s)	647, 778, 783
DpnI	GATC	1 cut(s)	25
DpnII	GATC	1 cut(s)	23
Eam1104I	CTCTTC	1 cut(s)	612
EarI	CTCTTC	1 cut(s)	612
Eco31I	GGTCTC	1 cut(s)	214
Eco47I	GGWCC	3 cut(s)	64, 274, 662
Eco57I	CTGAAG	1 cut(s)	235
EcoO109I	RGGNCCY	2 cut(s)	64, 662
EcoRI	GAATTC	1 cut(s)	511
FaeI	CATG	2 cut(s)	216, 292
FaiI	YATR	9 cut(s)	214, 290, 352, 354, 449, 533, 546, 587, 762
FatI	CATG	2 cut(s)	212, 288
FauI	CCCGC	4 cut(s)	116, 285, 368, 652
FauNDI	CATATG	1 cut(s)	352
FblI	GTMKAC	1 cut(s)	114
FokI	GGATG	2 cut(s)	374, 488
FspBI	CTAG	1 cut(s)	330
GlaI	GCGC	1 cut(s)	747
HapII	CCGG	2 cut(s)	153, 311
HgaI	GACGC	2 cut(s)	100, 294
HhaI	GCGC	1 cut(s)	748
Hin1II	CATG	2 cut(s)	216, 292
Hin6I	GCGC	1 cut(s)	746
HinP1I	GCGC	1 cut(s)	746
HinfI	GANTC	3 cut(s)	4, 314, 691
HpaII	CCGG	2 cut(s)	153, 311
HphI	GGTGA	2 cut(s)	308, 718
Hpy166II	GTNNAC	2 cut(s)	115, 385
Hpy188I	TCNGA	1 cut(s)	254
Hpy188III	TCNNGA	4 cut(s)	21, 153, 665, 754
Hpy8I	GTNNAC	2 cut(s)	115, 385
Hpy99I	CGWCG	1 cut(s)	288
HpyCH4III	ACNGT	2 cut(s)	391, 558
HpyCH4IV	ACGT	3 cut(s)	144, 204, 481
HpyCH4V	TGCA	4 cut(s)	479, 548, 553, 566
HpyF10VI	GCNNNNNNNGC	1 cut(s)	401
HpyF3I	CTNAG	3 cut(s)	647, 778, 783
HpySE526I	ACGT	3 cut(s)	144, 204, 481
Hsp92II	CATG	2 cut(s)	216, 292
HspAI	GCGC	1 cut(s)	746
Kpn2I	TCCGGA	1 cut(s)	152
KspI	CCGCGG	1 cut(s)	642
Kzo9I	GATC	1 cut(s)	23
LmnI	GCTCC	2 cut(s)	45, 774
LpnPI	CCDG	6 cut(s)	166, 230, 324, 525, 666, 678
LweI	GCATC	2 cut(s)	466, 582
MaeI	CTAG	1 cut(s)	330
MaeII	ACGT	3 cut(s)	144, 204, 481
MaeIII	GTNAC	3 cut(s)	14, 517, 751
MalI	GATC	1 cut(s)	25
MboI	GATC	1 cut(s)	23
MboII	GAAGA	2 cut(s)	626, 629
MluCI	AATT	2 cut(s)	511, 668
MlyI	GAGTC	1 cut(s)	13
MmeI	TCCRAC	3 cut(s)	67, 252, 409
MroI	TCCGGA	1 cut(s)	152
MseI	TTAA	2 cut(s)	399, 444
MspA1I	CMGCKG	1 cut(s)	641
MspI	CCGG	2 cut(s)	153, 311
MspR9I	CCNGG	1 cut(s)	311
Mva1269I	GAATGC	1 cut(s)	748
MvnI	CGCG	2 cut(s)	111, 641
MwoI	GCNNNNNNNGC	1 cut(s)	401
NciI	CCSGG	1 cut(s)	311
NdeI	CATATG	1 cut(s)	352
NdeII	GATC	1 cut(s)	23
NlaIII	CATG	2 cut(s)	216, 292
NlaIV	GGNNCC	1 cut(s)	663
NmuCI	GTSAC	2 cut(s)	14, 751
NspI	RCATGY	1 cut(s)	292
NspV	TTCGAA	1 cut(s)	183
PaeI	GCATGC	1 cut(s)	292
PcsI	WCGNNNNNNNCGW	1 cut(s)	761
PctI	GAATGC	1 cut(s)	748
PfeI	GAWTC	2 cut(s)	314, 691
PflFI	GACNNNGTC	1 cut(s)	206
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
Ppu21I	YACGTR	1 cut(s)	482
PpuMI	RGGWCCY	2 cut(s)	64, 662
Psp5II	RGGWCCY	2 cut(s)	64, 662
PspN4I	GGNNCC	1 cut(s)	663
PspPI	GGNCC	3 cut(s)	64, 274, 662
PspPPI	RGGWCCY	2 cut(s)	64, 662
PsyI	GACNNNGTC	1 cut(s)	206
SacII	CCGCGG	1 cut(s)	642
SaqAI	TTAA	2 cut(s)	399, 444
Sau3AI	GATC	1 cut(s)	23
Sau96I	GGNCC	3 cut(s)	64, 274, 662
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	1 cut(s)	311
SfaNI	GCATC	2 cut(s)	466, 582
Sfr303I	CCGCGG	1 cut(s)	642
SfuI	TTCGAA	1 cut(s)	183
SgrBI	CCGCGG	1 cut(s)	642
SinI	GGWCC	3 cut(s)	64, 274, 662
SmlI	CTYRAG	1 cut(s)	503
SmoI	CTYRAG	1 cut(s)	503
SphI	GCATGC	1 cut(s)	292
Sse9I	AATT	2 cut(s)	511, 668
SsiI	CCGC	7 cut(s)	109, 292, 375, 639, 641, 659, 704
SspMI	CTAG	1 cut(s)	330
StyD4I	CCNGG	1 cut(s)	309
TaaI	ACNGT	2 cut(s)	391, 558
TaiI	ACGT	3 cut(s)	147, 207, 484
TaqI	TCGA	3 cut(s)	183, 283, 492
TasI	AATT	2 cut(s)	511, 668
TfiI	GAWTC	2 cut(s)	314, 691
Tru1I	TTAA	2 cut(s)	399, 444
Tru9I	TTAA	2 cut(s)	399, 444
TseFI	GTSAC	2 cut(s)	14, 751
Tsp45I	GTSAC	2 cut(s)	14, 751
TspDTI	ATGAA	3 cut(s)	339, 510, 683
Tth111I	GACNNNGTC	1 cut(s)	206
VpaK11BI	GGWCC	3 cut(s)	64, 274, 662
XapI	RAATTY	2 cut(s)	511, 668
XceI	RCATGY	1 cut(s)	292
XmiI	GTMKAC	1 cut(s)	114
XspI	CTAG	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.